Wall clock time and date at job start Tue Mar 31 2020 14:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99887 * 2 1 4 4 H 1.48500 * 109.47014 * 90.00034 * 3 2 1 5 5 H 1.48503 * 109.47203 * 209.99933 * 3 2 1 6 6 H 1.48497 * 109.46972 * 329.99611 * 3 2 1 7 7 C 1.38814 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00177 * 196.65790 * 7 2 1 9 9 N 1.36932 * 119.99858 * 16.66131 * 7 2 1 10 10 C 1.47499 * 118.76194 * 26.39169 * 9 7 2 11 11 C 1.53949 * 110.82317 * 138.25223 * 10 9 7 12 12 C 1.51537 * 109.72755 * 320.31040 * 11 10 9 13 13 O 1.42157 * 108.76552 * 91.29255 * 12 11 10 14 14 C 1.38016 * 119.43350 * 272.78716 * 13 12 11 15 15 H 1.09005 * 109.46410 * 303.41762 * 14 13 12 16 16 C 1.52999 * 109.46599 * 183.43096 * 14 13 12 17 17 N 1.46507 * 109.47202 * 64.98326 * 16 14 13 18 18 C 1.34780 * 119.99731 * 179.97438 * 17 16 14 19 19 O 1.21528 * 120.00172 * 0.02562 * 18 17 16 20 20 C 1.48048 * 119.99440 * 179.97438 * 18 17 16 21 21 C 1.39390 * 119.68757 * 179.72819 * 20 18 17 22 22 C 1.38474 * 119.08880 * 179.77337 * 21 20 18 23 23 C 1.38898 * 118.46890 * 0.49017 * 22 21 20 24 24 F 1.35102 * 120.35137 * 179.72524 * 23 22 21 25 25 C 1.38881 * 119.29974 * 359.75160 * 23 22 21 26 26 N 1.31452 * 120.85404 * 0.02562 * 25 23 22 27 27 C 1.45126 * 118.75419 * 206.66111 * 9 7 2 28 28 H 0.96995 * 120.00444 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.17529 * 258.77713 * 10 9 7 30 30 H 1.09007 * 109.16444 * 17.97408 * 10 9 7 31 31 H 1.08996 * 109.46056 * 200.18150 * 11 10 9 32 32 H 1.09000 * 109.29615 * 80.33895 * 11 10 9 33 33 H 1.09003 * 109.58550 * 331.50860 * 12 11 10 34 34 H 1.09000 * 109.58890 * 211.07311 * 12 11 10 35 35 H 1.09005 * 109.47357 * 184.98089 * 16 14 13 36 36 H 1.09004 * 109.47225 * 304.98491 * 16 14 13 37 37 H 0.96992 * 119.99923 * 0.02562 * 17 16 14 38 38 H 1.08001 * 120.45575 * 359.97438 * 21 20 18 39 39 H 1.07996 * 120.75991 * 180.23996 * 22 21 20 40 40 H 1.07993 * 119.56808 * 180.02562 * 25 23 22 41 41 H 1.09005 * 109.46042 * 29.31210 * 27 9 7 42 42 H 1.08999 * 109.46280 * 149.27331 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0562 -1.2216 0.2687 9 7 1.3687 -2.3633 -0.3390 10 6 0.1969 -2.2917 -1.2319 11 6 0.2307 -3.4269 -2.2712 12 6 1.6511 -3.6332 -2.7574 13 8 2.2770 -4.6123 -1.9386 14 6 2.9061 -4.2210 -0.7741 15 1 3.6643 -3.4726 -1.0047 16 6 3.5700 -5.4348 -0.1206 17 7 4.6384 -5.9341 -0.9899 18 6 5.3664 -7.0049 -0.6159 19 8 5.1362 -7.5565 0.4423 20 6 6.4456 -7.5097 -1.4946 21 6 7.1983 -8.6142 -1.0988 22 6 8.2015 -9.0789 -1.9325 23 6 8.4258 -8.4156 -3.1321 24 9 9.3985 -8.8332 -3.9716 25 6 7.6399 -7.3183 -3.4592 26 7 6.6915 -6.9028 -2.6493 27 6 1.8639 -3.6172 0.1982 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7124 -2.3737 -0.6365 30 1 0.1993 -1.3323 -1.7494 31 1 -0.4075 -3.1656 -3.1152 32 1 -0.1331 -4.3463 -1.8124 33 1 2.2006 -2.6943 -2.6892 34 1 1.6370 -3.9767 -3.7917 35 1 3.9908 -5.1443 0.8420 36 1 2.8273 -6.2185 0.0290 37 1 4.8223 -5.4936 -1.8343 38 1 6.9995 -9.1028 -0.1564 39 1 8.7985 -9.9348 -1.6544 40 1 7.8102 -6.7996 -4.3910 41 1 2.3315 -3.4381 1.1664 42 1 1.0340 -4.3135 0.3191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073582846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:44 Heat of formation + Delta-G solvation = -80.449061 kcal Electronic energy + Delta-G solvation = -26970.323711 eV Core-core repulsion = 22865.147280 eV Total energy + Delta-G solvation = -4105.176432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.11543 -41.69567 -40.61100 -39.76959 -37.00287 -36.03086 -33.93046 -33.51409 -33.35210 -32.24447 -30.08549 -27.44039 -27.09112 -25.63306 -24.96141 -24.04966 -22.30138 -21.89520 -21.31308 -19.42561 -18.86637 -18.63132 -18.43471 -17.62541 -17.18803 -16.97527 -16.91540 -16.45176 -16.29253 -16.19508 -15.61801 -15.51231 -15.01023 -14.90966 -14.74942 -14.53832 -14.26222 -14.21874 -13.73326 -13.63609 -13.58262 -13.13354 -13.00740 -12.76063 -12.50070 -12.39921 -12.09869 -11.77537 -11.51666 -11.45139 -11.32285 -11.11768 -10.78775 -10.54208 -10.30709 -10.26806 -10.01058 -8.72426 -7.90003 -5.36908 -0.65299 -0.02196 1.45239 1.47264 1.53579 1.56279 1.98183 2.49420 2.62131 2.75633 2.80759 3.04120 3.25369 3.55386 3.59868 3.68644 3.76745 4.04765 4.12433 4.15056 4.21322 4.35691 4.53109 4.58444 4.60578 4.66262 4.72352 4.75129 4.78757 4.84989 4.91336 5.14231 5.18402 5.24311 5.32579 5.41388 5.46468 5.61403 5.74169 6.28385 6.35677 6.59981 6.74881 7.05419 7.14017 7.86302 8.27747 9.15839 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.002609 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.666937 B =10731.281696 C =10992.114509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.045 4.045 3 Si 0.963 3.037 4 H -0.286 1.286 5 H -0.270 1.270 6 H -0.293 1.293 7 C -0.270 4.270 8 H 0.067 0.933 9 N -0.606 5.606 10 C 0.185 3.815 11 C -0.163 4.163 12 C 0.091 3.909 13 O -0.393 6.393 14 C 0.086 3.914 15 H 0.043 0.957 16 C 0.139 3.861 17 N -0.694 5.694 18 C 0.567 3.433 19 O -0.566 6.566 20 C 0.050 3.950 21 C -0.081 4.081 22 C -0.104 4.104 23 C 0.073 3.927 24 F -0.123 7.123 25 C 0.076 3.924 26 N -0.447 5.447 27 C 0.124 3.876 28 H 0.250 0.750 29 H -0.005 1.005 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.417 0.583 38 H 0.166 0.834 39 H 0.187 0.813 40 H 0.199 0.801 41 H 0.053 0.947 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.608 -17.457 -8.507 24.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.240 4.240 3 Si 0.791 3.209 4 H -0.213 1.213 5 H -0.194 1.194 6 H -0.219 1.219 7 C -0.400 4.400 8 H 0.085 0.915 9 N -0.328 5.328 10 C 0.060 3.940 11 C -0.202 4.202 12 C 0.016 3.984 13 O -0.312 6.312 14 C 0.024 3.976 15 H 0.061 0.939 16 C 0.015 3.985 17 N -0.344 5.344 18 C 0.353 3.647 19 O -0.446 6.446 20 C -0.087 4.087 21 C -0.102 4.102 22 C -0.130 4.130 23 C 0.051 3.949 24 F -0.101 7.101 25 C -0.086 4.086 26 N -0.157 5.157 27 C -0.004 4.004 28 H 0.059 0.941 29 H 0.013 0.987 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.254 0.746 38 H 0.184 0.816 39 H 0.204 0.796 40 H 0.216 0.784 41 H 0.071 0.929 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.767 -17.149 -8.022 24.010 hybrid contribution 0.565 1.050 0.084 1.195 sum 15.332 -16.099 -7.938 23.606 Atomic orbital electron populations 1.70224 1.06634 1.25874 1.55195 1.25759 0.95956 1.01409 1.00910 0.85348 0.78190 0.79787 0.77545 1.21296 1.19440 1.21890 1.19485 0.92924 0.86078 1.41555 0.91524 1.44041 1.33431 1.02101 1.53184 1.20844 0.87360 0.96032 0.89755 1.22677 0.98592 0.99254 0.99696 1.22068 0.91592 0.91442 0.93344 1.86105 1.72463 1.37900 1.34699 1.22298 0.94087 0.94343 0.86876 0.93906 1.21330 0.88732 0.95229 0.93169 1.45778 1.33884 1.30362 1.24364 1.18077 0.81395 0.80257 0.85021 1.90773 1.70015 1.59253 1.24519 1.21081 0.98025 0.96333 0.93294 1.22176 0.92710 0.94124 1.01217 1.21989 0.97978 1.01248 0.91752 1.19137 0.89186 0.96463 0.90145 1.91569 1.59593 1.89224 1.69712 1.23360 0.90758 0.94046 1.00474 1.67573 1.16334 1.28964 1.02874 1.21557 0.95737 0.87719 0.95393 0.94085 0.98665 0.93739 0.89681 0.92033 0.94174 0.87517 0.89556 0.90771 0.74578 0.81637 0.79553 0.78442 0.92881 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.39 11.10 21.65 0.24 -54.15 16 2 C -0.04 -2.44 4.85 84.86 0.41 -2.03 16 3 Si 0.96 44.08 29.59 68.60 2.03 46.11 16 4 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 7 C -0.27 -14.43 9.45 84.03 0.79 -13.64 16 8 H 0.07 3.48 7.88 -2.91 -0.02 3.45 16 9 N -0.61 -29.51 2.21 -697.45 -1.54 -31.05 16 10 C 0.18 8.79 4.75 86.51 0.41 9.20 16 11 C -0.16 -5.89 5.79 30.44 0.18 -5.71 16 12 C 0.09 3.05 6.38 71.50 0.46 3.50 16 13 O -0.39 -13.27 9.38 -117.87 -1.11 -14.38 16 14 C 0.09 2.93 2.68 31.21 0.08 3.01 16 15 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 16 C 0.14 4.15 5.34 86.38 0.46 4.61 16 17 N -0.69 -19.03 5.48 -465.75 -2.55 -21.59 16 18 C 0.57 15.64 7.81 86.85 0.68 16.32 16 19 O -0.57 -18.39 16.32 -3.80 -0.06 -18.46 16 20 C 0.05 1.09 6.75 41.89 0.28 1.37 16 21 C -0.08 -1.32 9.63 22.60 0.22 -1.10 16 22 C -0.10 -1.17 10.15 22.48 0.23 -0.94 16 23 C 0.07 0.93 7.36 22.58 0.17 1.10 16 24 F -0.12 -1.56 17.28 44.97 0.78 -0.78 16 25 C 0.08 1.09 11.17 84.90 0.95 2.04 16 26 N -0.45 -9.00 9.53 -184.74 -1.76 -10.76 16 27 C 0.12 5.05 5.12 87.25 0.45 5.50 16 28 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.00 -0.25 8.03 -2.39 -0.02 -0.27 16 30 H 0.04 2.35 6.43 -2.38 -0.02 2.33 16 31 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.06 2.19 8.01 -2.39 -0.02 2.18 16 33 H 0.04 1.53 7.41 -2.39 -0.02 1.51 16 34 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 36 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.42 10.88 7.78 -92.71 -0.72 10.15 16 38 H 0.17 2.44 7.64 -2.91 -0.02 2.42 16 39 H 0.19 0.86 8.06 -2.91 -0.02 0.84 16 40 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.05 2.16 7.98 -2.38 -0.02 2.15 16 42 H 0.04 1.81 8.11 -2.39 -0.02 1.79 16 Total: -1.00 -66.64 353.84 2.11 -64.52 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.33 Total: 17.31 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 5.76 Total: 23.23 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -5.62 Total: -117.56 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.17 Total: -32.83 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.78 Total: -0.78 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -66.64 2.11 -64.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073582846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.924 kcal (2) G-P(sol) polarization free energy of solvation -66.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds