Wall clock time and date at job start Tue Mar 31 2020 14:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00073 * 2 1 4 4 H 1.48503 * 109.47073 * 239.99503 * 3 2 1 5 5 H 1.48505 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47260 * 119.99840 * 3 2 1 7 7 C 1.38819 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99615 * 160.77107 * 7 2 1 9 9 N 1.36938 * 119.99999 * 340.76695 * 7 2 1 10 10 C 1.43415 * 120.63539 * 155.64931 * 9 7 2 11 11 C 1.55325 * 116.24463 * 269.33866 * 10 9 7 12 12 C 1.55192 * 108.87260 * 319.46543 * 11 10 9 13 13 O 1.39639 * 110.56502 * 322.14220 * 12 11 10 14 14 C 1.42382 * 108.64005 * 101.17129 * 13 12 11 15 15 H 1.09007 * 108.61685 * 28.42371 * 14 13 12 16 16 C 1.52998 * 108.62152 * 146.33943 * 14 13 12 17 17 N 1.46504 * 109.47263 * 299.99852 * 16 14 13 18 18 C 1.34771 * 119.99915 * 179.97438 * 17 16 14 19 19 O 1.21525 * 120.00073 * 0.02562 * 18 17 16 20 20 C 1.48055 * 119.99766 * 180.02562 * 18 17 16 21 21 C 1.39381 * 119.68937 * 180.02562 * 20 18 17 22 22 C 1.38463 * 119.08954 * 179.97438 * 21 20 18 23 23 C 1.38901 * 118.47313 * 359.73451 * 22 21 20 24 24 F 1.35095 * 120.35315 * 180.28613 * 23 22 21 25 25 C 1.38879 * 119.29374 * 0.51129 * 23 22 21 26 26 N 1.31450 * 120.85825 * 359.47360 * 25 23 22 27 27 C 1.46916 * 113.79011 * 267.45588 * 14 13 12 28 28 H 0.97000 * 119.99762 * 0.02562 * 1 2 3 29 29 H 1.08999 * 108.12880 * 147.57822 * 10 9 7 30 30 H 1.09008 * 107.96363 * 30.96762 * 10 9 7 31 31 H 1.08997 * 109.57655 * 199.64620 * 11 10 9 32 32 H 1.09007 * 109.57272 * 79.27938 * 11 10 9 33 33 H 1.08997 * 109.25933 * 201.85922 * 12 11 10 34 34 H 1.08999 * 109.25818 * 82.42287 * 12 11 10 35 35 H 1.09002 * 109.46481 * 180.02562 * 16 14 13 36 36 H 1.08992 * 109.47021 * 60.00235 * 16 14 13 37 37 H 0.96999 * 119.99453 * 0.02562 * 17 16 14 38 38 H 1.07997 * 120.45733 * 0.02562 * 21 20 18 39 39 H 1.08003 * 120.76502 * 179.97438 * 22 21 20 40 40 H 1.07994 * 119.57161 * 179.75589 * 25 23 22 41 41 H 1.09000 * 109.99449 * 176.11754 * 27 14 13 42 42 H 1.08998 * 109.98887 * 297.48653 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0450 -1.2284 -0.3075 9 7 1.3829 -2.3549 0.3917 10 6 1.8493 -3.6319 -0.0648 11 6 1.2154 -4.1651 -1.3788 12 6 -0.3040 -3.8492 -1.3674 13 8 -0.8284 -4.0079 -0.0830 14 6 -0.9699 -2.7225 0.5128 15 1 -1.1305 -1.9886 -0.2770 16 6 -2.2009 -2.7380 1.4213 17 7 -3.3906 -3.0527 0.6264 18 6 -4.5986 -3.1219 1.2198 19 8 -4.7011 -2.9227 2.4143 20 6 -5.8008 -3.4405 0.4166 21 6 -7.0471 -3.5098 1.0368 22 6 -8.1632 -3.8082 0.2737 23 6 -7.9960 -4.0222 -1.0885 24 9 -9.0598 -4.3101 -1.8700 25 6 -6.7230 -3.9418 -1.6378 26 7 -5.6819 -3.6566 -0.8878 27 6 0.1939 -2.3059 1.3069 28 1 -0.4850 0.8401 -0.0004 29 1 1.6627 -4.3623 0.7224 30 1 2.9272 -3.5632 -0.2119 31 1 1.3637 -5.2429 -1.4447 32 1 1.6833 -3.6773 -2.2340 33 1 -0.8169 -4.5254 -2.0512 34 1 -0.4600 -2.8213 -1.6949 35 1 -2.3226 -1.7590 1.8848 36 1 -2.0712 -3.4936 2.1960 37 1 -3.3086 -3.2120 -0.3269 38 1 -7.1411 -3.3324 2.0980 39 1 -9.1419 -3.8692 0.7264 40 1 -6.5874 -4.1114 -2.6957 41 1 0.0492 -1.2905 1.6758 42 1 0.3388 -2.9902 2.1428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073582854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:49 Heat of formation + Delta-G solvation = -53.402533 kcal Electronic energy + Delta-G solvation = -27520.503272 eV Core-core repulsion = 23416.499666 eV Total energy + Delta-G solvation = -4104.003606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.39999 -40.71559 -39.26575 -38.45155 -35.03272 -34.62029 -32.97023 -32.17658 -31.52163 -30.92671 -28.61308 -25.95019 -25.31278 -24.48630 -23.94318 -22.49056 -20.81570 -20.58471 -19.59542 -18.35328 -17.80750 -17.60977 -16.99199 -16.24219 -16.02343 -15.58703 -15.27983 -15.01301 -14.87094 -14.53565 -14.29089 -14.14251 -13.91725 -13.77350 -13.52852 -13.16927 -12.99386 -12.77007 -12.52377 -12.24611 -11.94928 -11.40920 -11.22708 -10.83905 -10.74896 -10.49599 -10.39267 -10.37184 -10.14311 -9.96841 -9.80874 -9.65702 -9.50034 -9.35889 -8.79078 -8.70082 -8.49963 -6.82092 -5.92163 -3.30812 0.20936 0.70878 2.60211 3.21806 3.34085 3.40744 3.42646 3.57611 3.59432 3.93562 4.31257 4.39697 4.43631 4.60314 4.72862 5.01868 5.23821 5.28500 5.31472 5.45909 5.51438 5.72503 5.83888 5.93360 5.98640 6.12817 6.16496 6.33844 6.40292 6.46348 6.54072 6.68385 6.71640 6.81488 6.89326 6.96233 7.12318 7.26329 7.32127 7.71793 7.78729 8.14557 8.32080 8.34309 9.07065 9.75182 10.29576 11.16957 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016989 B = 0.003053 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.748407 B = 9169.705074 C = 9609.026964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.161 3.839 11 C -0.172 4.172 12 C 0.068 3.932 13 O -0.369 6.369 14 C 0.060 3.940 15 H 0.108 0.892 16 C 0.118 3.882 17 N -0.688 5.688 18 C 0.564 3.436 19 O -0.540 6.540 20 C 0.077 3.923 21 C -0.084 4.084 22 C -0.116 4.116 23 C 0.064 3.936 24 F -0.127 7.127 25 C 0.077 3.923 26 N -0.428 5.428 27 C 0.143 3.857 28 H 0.256 0.744 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.412 0.588 38 H 0.160 0.840 39 H 0.154 0.846 40 H 0.175 0.825 41 H 0.104 0.896 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.196 -7.957 -2.137 16.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.308 5.308 10 C 0.032 3.968 11 C -0.213 4.213 12 C -0.010 4.010 13 O -0.288 6.288 14 C 0.001 3.999 15 H 0.126 0.874 16 C -0.006 4.006 17 N -0.337 5.337 18 C 0.348 3.652 19 O -0.418 6.418 20 C -0.062 4.062 21 C -0.105 4.105 22 C -0.143 4.143 23 C 0.042 3.958 24 F -0.105 7.105 25 C -0.084 4.084 26 N -0.138 5.138 27 C 0.018 3.982 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.248 0.752 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.192 0.808 41 H 0.122 0.878 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -13.523 -7.767 -1.544 15.671 hybrid contribution -0.599 0.855 -0.635 1.222 sum -14.122 -6.912 -2.179 15.873 Atomic orbital electron populations 1.69855 1.05192 1.25821 1.54415 1.24899 0.95301 0.98333 1.00990 0.86329 0.78935 0.83183 0.78091 1.21047 1.21648 1.21090 1.19224 0.93648 0.85189 1.39837 0.91334 1.44103 1.34101 1.01490 1.51083 1.20380 0.95894 0.87780 0.92786 1.23582 0.97019 0.99053 1.01654 1.22342 0.93296 1.00815 0.84577 1.87514 1.83307 1.28942 1.28999 1.22206 0.93727 0.85058 0.98879 0.87437 1.21826 0.83109 1.01270 0.94382 1.45820 1.06246 1.68157 1.13493 1.17701 0.82732 0.78263 0.86531 1.90783 1.85846 1.51019 1.14151 1.21446 0.94565 0.99918 0.90233 1.22077 0.90687 0.95213 1.02547 1.21681 1.01076 0.99544 0.91949 1.19075 0.85344 1.01645 0.89748 1.91543 1.54377 1.90566 1.74022 1.22973 0.86115 0.98071 1.01281 1.67661 1.32469 1.08290 1.05414 1.20744 0.85421 1.01375 0.90611 0.93399 0.94999 0.94900 0.93196 0.92503 0.93024 0.91879 0.89994 0.91586 0.75237 0.82265 0.82798 0.80821 0.87785 0.96219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.55 9.56 55.49 0.53 -23.02 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 20.79 29.59 -169.99 -5.03 15.75 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.46 9.61 -15.06 -0.14 -6.61 16 8 H 0.07 1.78 7.87 -52.49 -0.41 1.36 16 9 N -0.59 -14.01 2.61 -174.51 -0.46 -14.46 16 10 C 0.16 3.38 5.33 -4.44 -0.02 3.35 16 11 C -0.17 -3.21 6.75 -24.34 -0.16 -3.38 16 12 C 0.07 1.27 6.38 38.32 0.24 1.52 16 13 O -0.37 -7.27 9.54 -31.93 -0.30 -7.57 16 14 C 0.06 1.22 1.95 -29.65 -0.06 1.16 16 15 H 0.11 2.46 5.23 -51.93 -0.27 2.19 16 16 C 0.12 2.17 5.24 -4.04 -0.02 2.15 16 17 N -0.69 -11.51 5.42 -61.18 -0.33 -11.84 16 18 C 0.56 9.19 7.81 -12.24 -0.10 9.10 16 19 O -0.54 -10.00 16.32 5.34 0.09 -9.92 16 20 C 0.08 1.02 6.75 -83.02 -0.56 0.46 16 21 C -0.08 -0.89 9.63 -39.07 -0.38 -1.27 16 22 C -0.12 -0.97 10.15 -39.25 -0.40 -1.37 16 23 C 0.06 0.58 7.36 -39.10 -0.29 0.29 16 24 F -0.13 -1.13 17.28 2.25 0.04 -1.09 16 25 C 0.08 0.75 11.17 -17.48 -0.20 0.56 16 26 N -0.43 -5.36 9.53 -9.74 -0.09 -5.45 16 27 C 0.14 3.21 4.71 -4.93 -0.02 3.19 16 28 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 30 H 0.03 0.68 7.95 -51.92 -0.41 0.27 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.33 6.66 -51.93 -0.35 0.99 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.41 6.66 7.65 -40.82 -0.31 6.35 16 38 H 0.16 1.53 7.64 -52.49 -0.40 1.13 16 39 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.10 2.55 6.03 -51.93 -0.31 2.24 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 349.23 15.07 5.26 5.26 Total: -1.00 -28.33 349.23 -7.89 -36.22 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.40 Total: 6.98 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -2.19 Total: 9.13 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.35 Total: -54.77 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.22 Total: -17.49 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.33 -7.89 -36.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073582854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.185 kcal (2) G-P(sol) polarization free energy of solvation -28.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds