Wall clock time and date at job start Tue Mar 31 2020 14:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00073 * 2 1 4 4 H 1.48503 * 109.47073 * 239.99503 * 3 2 1 5 5 H 1.48505 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47260 * 119.99840 * 3 2 1 7 7 C 1.38819 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99615 * 160.77107 * 7 2 1 9 9 N 1.36938 * 119.99999 * 340.76695 * 7 2 1 10 10 C 1.43415 * 120.63539 * 155.64931 * 9 7 2 11 11 C 1.55325 * 116.24463 * 269.33866 * 10 9 7 12 12 C 1.55192 * 108.87260 * 319.46543 * 11 10 9 13 13 O 1.39639 * 110.56502 * 322.14220 * 12 11 10 14 14 C 1.42382 * 108.64005 * 101.17129 * 13 12 11 15 15 H 1.09007 * 108.61685 * 28.42371 * 14 13 12 16 16 C 1.52998 * 108.62152 * 146.33943 * 14 13 12 17 17 N 1.46504 * 109.47263 * 299.99852 * 16 14 13 18 18 C 1.34771 * 119.99915 * 179.97438 * 17 16 14 19 19 O 1.21525 * 120.00073 * 0.02562 * 18 17 16 20 20 C 1.48055 * 119.99766 * 180.02562 * 18 17 16 21 21 C 1.39381 * 119.68937 * 180.02562 * 20 18 17 22 22 C 1.38463 * 119.08954 * 179.97438 * 21 20 18 23 23 C 1.38901 * 118.47313 * 359.73451 * 22 21 20 24 24 F 1.35095 * 120.35315 * 180.28613 * 23 22 21 25 25 C 1.38879 * 119.29374 * 0.51129 * 23 22 21 26 26 N 1.31450 * 120.85825 * 359.47360 * 25 23 22 27 27 C 1.46916 * 113.79011 * 267.45588 * 14 13 12 28 28 H 0.97000 * 119.99762 * 0.02562 * 1 2 3 29 29 H 1.08999 * 108.12880 * 147.57822 * 10 9 7 30 30 H 1.09008 * 107.96363 * 30.96762 * 10 9 7 31 31 H 1.08997 * 109.57655 * 199.64620 * 11 10 9 32 32 H 1.09007 * 109.57272 * 79.27938 * 11 10 9 33 33 H 1.08997 * 109.25933 * 201.85922 * 12 11 10 34 34 H 1.08999 * 109.25818 * 82.42287 * 12 11 10 35 35 H 1.09002 * 109.46481 * 180.02562 * 16 14 13 36 36 H 1.08992 * 109.47021 * 60.00235 * 16 14 13 37 37 H 0.96999 * 119.99453 * 0.02562 * 17 16 14 38 38 H 1.07997 * 120.45733 * 0.02562 * 21 20 18 39 39 H 1.08003 * 120.76502 * 179.97438 * 22 21 20 40 40 H 1.07994 * 119.57161 * 179.75589 * 25 23 22 41 41 H 1.09000 * 109.99449 * 176.11754 * 27 14 13 42 42 H 1.08998 * 109.98887 * 297.48653 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0450 -1.2284 -0.3075 9 7 1.3829 -2.3549 0.3917 10 6 1.8493 -3.6319 -0.0648 11 6 1.2154 -4.1651 -1.3788 12 6 -0.3040 -3.8492 -1.3674 13 8 -0.8284 -4.0079 -0.0830 14 6 -0.9699 -2.7225 0.5128 15 1 -1.1305 -1.9886 -0.2770 16 6 -2.2009 -2.7380 1.4213 17 7 -3.3906 -3.0527 0.6264 18 6 -4.5986 -3.1219 1.2198 19 8 -4.7011 -2.9227 2.4143 20 6 -5.8008 -3.4405 0.4166 21 6 -7.0471 -3.5098 1.0368 22 6 -8.1632 -3.8082 0.2737 23 6 -7.9960 -4.0222 -1.0885 24 9 -9.0598 -4.3101 -1.8700 25 6 -6.7230 -3.9418 -1.6378 26 7 -5.6819 -3.6566 -0.8878 27 6 0.1939 -2.3059 1.3069 28 1 -0.4850 0.8401 -0.0004 29 1 1.6627 -4.3623 0.7224 30 1 2.9272 -3.5632 -0.2119 31 1 1.3637 -5.2429 -1.4447 32 1 1.6833 -3.6773 -2.2340 33 1 -0.8169 -4.5254 -2.0512 34 1 -0.4600 -2.8213 -1.6949 35 1 -2.3226 -1.7590 1.8848 36 1 -2.0712 -3.4936 2.1960 37 1 -3.3086 -3.2120 -0.3269 38 1 -7.1411 -3.3324 2.0980 39 1 -9.1419 -3.8692 0.7264 40 1 -6.5874 -4.1114 -2.6957 41 1 0.0492 -1.2905 1.6758 42 1 0.3388 -2.9902 2.1428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073582854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:48 Heat of formation + Delta-G solvation = -71.353539 kcal Electronic energy + Delta-G solvation = -27521.281686 eV Core-core repulsion = 23416.499666 eV Total energy + Delta-G solvation = -4104.782020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.12237 -41.71156 -40.73874 -39.75976 -36.79489 -36.06738 -34.01253 -33.61134 -33.00310 -32.13162 -30.25150 -27.44388 -27.06049 -25.52490 -24.91934 -24.02337 -22.40653 -21.82554 -21.29135 -19.43306 -18.92141 -18.62967 -18.38639 -17.68063 -16.99310 -16.92562 -16.59215 -16.51900 -16.25209 -16.02685 -15.60340 -15.48853 -14.98156 -14.89798 -14.81673 -14.50162 -14.24376 -14.16054 -13.80386 -13.64497 -13.55252 -13.26779 -12.94682 -12.60229 -12.51143 -12.30406 -11.92020 -11.79469 -11.50485 -11.35862 -11.18546 -11.12890 -10.78865 -10.54729 -10.30407 -10.25757 -10.00076 -8.70743 -7.88264 -5.29135 -0.65915 -0.02555 1.49172 1.52700 1.53728 1.57845 2.02298 2.53321 2.61792 2.79221 3.03258 3.12238 3.28844 3.51121 3.58851 3.67738 3.76568 4.10489 4.15395 4.27840 4.37664 4.41705 4.55189 4.60773 4.70604 4.73782 4.77169 4.79688 4.80300 4.95955 5.08612 5.19040 5.19218 5.33451 5.36329 5.40913 5.42187 5.50554 5.69205 6.29458 6.37880 6.51999 6.60905 7.05757 7.12145 7.84299 8.37280 9.17505 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016989 B = 0.003053 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.748407 B = 9169.705074 C = 9609.026964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.036 4.036 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.285 1.285 7 C -0.265 4.265 8 H 0.063 0.937 9 N -0.602 5.602 10 C 0.154 3.846 11 C -0.164 4.164 12 C 0.069 3.931 13 O -0.368 6.368 14 C 0.079 3.921 15 H 0.083 0.917 16 C 0.130 3.870 17 N -0.689 5.689 18 C 0.563 3.437 19 O -0.569 6.569 20 C 0.050 3.950 21 C -0.081 4.081 22 C -0.102 4.102 23 C 0.074 3.926 24 F -0.121 7.121 25 C 0.075 3.925 26 N -0.449 5.449 27 C 0.145 3.855 28 H 0.251 0.749 29 H 0.036 0.964 30 H 0.032 0.968 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.414 0.586 38 H 0.166 0.834 39 H 0.189 0.811 40 H 0.199 0.801 41 H 0.080 0.920 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.746 -9.085 -3.058 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.232 4.232 3 Si 0.789 3.211 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.212 1.212 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.323 5.323 10 C 0.026 3.974 11 C -0.205 4.205 12 C -0.009 4.009 13 O -0.286 6.286 14 C 0.020 3.980 15 H 0.101 0.899 16 C 0.005 3.995 17 N -0.338 5.338 18 C 0.349 3.651 19 O -0.449 6.449 20 C -0.087 4.087 21 C -0.102 4.102 22 C -0.128 4.128 23 C 0.052 3.948 24 F -0.100 7.100 25 C -0.087 4.087 26 N -0.159 5.159 27 C 0.020 3.980 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.251 0.749 38 H 0.183 0.817 39 H 0.207 0.793 40 H 0.216 0.784 41 H 0.098 0.902 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.070 -8.919 -2.479 17.686 hybrid contribution -0.173 1.142 -0.400 1.222 sum -15.243 -7.777 -2.879 17.353 Atomic orbital electron populations 1.69995 1.05849 1.25760 1.54690 1.25482 0.96040 1.00531 1.01188 0.85469 0.77710 0.80061 0.77859 1.20717 1.22059 1.21154 1.19378 0.93671 0.86336 1.40060 0.91877 1.44236 1.34500 1.01937 1.51640 1.20502 0.96026 0.86769 0.94142 1.23494 0.96455 1.00629 0.99915 1.22385 0.93885 1.00061 0.84574 1.87509 1.83380 1.28255 1.29471 1.21764 0.93583 0.84731 0.97910 0.89924 1.21516 0.83326 1.00596 0.94046 1.45736 1.06113 1.68545 1.13430 1.18167 0.83293 0.77147 0.86508 1.90751 1.86386 1.52291 1.15481 1.21062 0.94018 1.02877 0.90719 1.22162 0.90226 0.94803 1.03036 1.21986 1.01768 0.97587 0.91469 1.19106 0.85152 1.00522 0.90032 1.91566 1.54080 1.90353 1.73964 1.23375 0.85906 0.97218 1.02152 1.67574 1.33906 1.09200 1.05260 1.20670 0.86073 1.00188 0.91022 0.93986 0.94603 0.95004 0.90331 0.92753 0.89852 0.94615 0.91311 0.91569 0.74912 0.81679 0.79344 0.78389 0.90208 0.95520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.75 9.56 21.65 0.21 -48.54 16 2 C -0.04 -1.88 4.92 84.86 0.42 -1.46 16 3 Si 0.96 43.22 29.59 68.60 2.03 45.25 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.26 -13.89 9.61 84.03 0.81 -13.08 16 8 H 0.06 3.31 7.87 -2.91 -0.02 3.29 16 9 N -0.60 -29.02 2.61 -706.01 -1.84 -30.87 16 10 C 0.15 6.38 5.33 87.75 0.47 6.85 16 11 C -0.16 -5.87 6.75 32.15 0.22 -5.66 16 12 C 0.07 2.51 6.38 72.73 0.46 2.98 16 13 O -0.37 -14.26 9.54 -137.18 -1.31 -15.57 16 14 C 0.08 3.27 1.95 28.71 0.06 3.33 16 15 H 0.08 3.91 5.23 -2.38 -0.01 3.89 16 16 C 0.13 4.90 5.24 86.38 0.45 5.35 16 17 N -0.69 -23.49 5.42 -465.78 -2.52 -26.01 16 18 C 0.56 18.60 7.81 86.85 0.68 19.28 16 19 O -0.57 -21.49 16.32 -3.80 -0.06 -21.55 16 20 C 0.05 1.31 6.75 41.89 0.28 1.59 16 21 C -0.08 -1.59 9.63 22.60 0.22 -1.37 16 22 C -0.10 -1.40 10.15 22.48 0.23 -1.17 16 23 C 0.07 1.12 7.36 22.58 0.17 1.28 16 24 F -0.12 -1.76 17.28 44.97 0.78 -0.98 16 25 C 0.08 1.31 11.17 84.90 0.95 2.26 16 26 N -0.45 -10.76 9.53 -184.74 -1.76 -12.52 16 27 C 0.15 6.66 4.71 83.78 0.39 7.06 16 28 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 29 H 0.04 1.44 7.99 -2.39 -0.02 1.42 16 30 H 0.03 1.31 7.95 -2.38 -0.02 1.29 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.04 1.52 6.66 -2.39 -0.02 1.50 16 35 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.41 13.58 7.65 -92.71 -0.71 12.87 16 38 H 0.17 2.97 7.64 -2.91 -0.02 2.95 16 39 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 40 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.08 4.06 6.03 -2.39 -0.01 4.04 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -61.34 349.23 1.66 -59.67 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.35 Total: 23.89 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 5.80 Total: 27.23 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -5.92 Total: -117.94 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.37 Total: -37.12 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.78 Total: -0.98 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -61.34 1.66 -59.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073582854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.681 kcal (2) G-P(sol) polarization free energy of solvation -61.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds