Wall clock time and date at job start Tue Mar 31 2020 14:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00189 * 2 1 4 4 H 1.48500 * 109.46710 * 273.93303 * 3 2 1 5 5 H 1.48497 * 109.46986 * 33.92990 * 3 2 1 6 6 H 1.48498 * 109.47360 * 153.93735 * 3 2 1 7 7 C 1.38816 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99552 * 193.74574 * 7 2 1 9 9 N 1.36933 * 119.99925 * 13.74390 * 7 2 1 10 10 C 1.47347 * 121.30367 * 26.03455 * 9 7 2 11 11 C 1.53194 * 108.79722 * 129.73271 * 10 9 7 12 12 O 1.43148 * 109.73804 * 51.21955 * 11 10 9 13 13 C 1.42595 * 113.63476 * 298.30920 * 12 11 10 14 14 H 1.08998 * 109.33986 * 304.38580 * 13 12 11 15 15 C 1.52795 * 111.11536 * 183.60245 * 13 12 11 16 16 C 1.53362 * 108.81171 * 177.44633 * 15 13 12 17 17 N 1.46837 * 109.25260 * 53.82655 * 16 15 13 18 18 C 1.34778 * 120.40530 * 127.77988 * 17 16 15 19 19 O 1.21700 * 119.99750 * 178.18575 * 18 17 16 20 20 C 1.46661 * 120.00265 * 358.19540 * 18 17 16 21 21 C 1.37931 * 126.21346 * 208.34888 * 20 18 17 22 22 C 1.39924 * 107.10559 * 179.97438 * 21 20 18 23 23 F 1.35098 * 126.07920 * 180.02562 * 22 21 20 24 24 C 1.35575 * 107.84590 * 0.02562 * 22 21 20 25 25 N 1.35750 * 108.83068 * 359.72758 * 24 22 21 26 26 H 0.96994 * 125.67999 * 180.29720 * 25 24 22 27 27 C 1.47132 * 119.18830 * 307.76494 * 17 16 15 28 28 C 1.46869 * 121.30149 * 206.00940 * 9 7 2 29 29 H 1.08997 * 110.21400 * 112.03343 * 28 9 7 30 30 H 0.97001 * 120.00234 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58453 * 249.52756 * 10 9 7 32 32 H 1.09001 * 109.58202 * 9.94376 * 10 9 7 33 33 H 1.09000 * 109.42852 * 291.13643 * 11 10 9 34 34 H 1.09006 * 109.42411 * 171.30082 * 11 10 9 35 35 H 1.08992 * 109.57719 * 297.24905 * 15 13 12 36 36 H 1.09001 * 109.57669 * 57.64995 * 15 13 12 37 37 H 1.08998 * 109.51201 * 173.75900 * 16 15 13 38 38 H 1.08998 * 109.50936 * 293.85268 * 16 15 13 39 39 H 1.07996 * 126.44487 * 359.97030 * 21 20 18 40 40 H 1.07995 * 125.57954 * 180.02562 * 24 22 21 41 41 H 1.09000 * 109.72411 * 172.88435 * 27 17 16 42 42 H 1.09000 * 109.72602 * 293.55515 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4145 2.0944 -1.3968 5 1 1.4917 2.6272 0.7815 6 1 3.5869 1.4176 0.6151 7 6 2.0102 -1.2022 0.0005 8 1 3.0670 -1.2154 0.2228 9 7 1.3549 -2.3712 -0.2807 10 6 0.1366 -2.3857 -1.1093 11 6 0.2994 -3.4409 -2.2079 12 8 0.6964 -4.6871 -1.6263 13 6 1.9515 -4.6292 -0.9520 14 1 2.7138 -4.2621 -1.6392 15 6 2.3606 -6.0062 -0.4311 16 6 3.7420 -5.8960 0.2259 17 7 3.7124 -4.8348 1.2403 18 6 4.1301 -5.0814 2.4978 19 8 4.1334 -4.1879 3.3241 20 6 4.5808 -6.4264 2.8704 21 6 4.5142 -6.9890 4.1280 22 6 5.0504 -8.2778 4.0313 23 9 5.1710 -9.1672 5.0410 24 6 5.4276 -8.4754 2.7441 25 7 5.1417 -7.3585 2.0274 26 1 5.3070 -7.2369 1.0794 27 6 3.2215 -3.4989 0.8672 28 6 1.8392 -3.6597 0.2314 29 1 1.1413 -4.0588 0.9674 30 1 -0.4850 0.8400 0.0004 31 1 -0.7244 -2.6342 -0.4888 32 1 -0.0083 -1.4053 -1.5631 33 1 1.0602 -3.1126 -2.9161 34 1 -0.6489 -3.5701 -2.7298 35 1 1.6328 -6.3496 0.3039 36 1 2.4059 -6.7118 -1.2607 37 1 3.9970 -6.8444 0.6986 38 1 4.4874 -5.6551 -0.5320 39 1 4.1220 -6.5224 5.0195 40 1 5.8770 -9.3758 2.3522 41 1 3.1470 -2.8728 1.7563 42 1 3.9050 -3.0425 0.1513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074302434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:37 Heat of formation + Delta-G solvation = -42.538571 kcal Electronic energy + Delta-G solvation = -28320.539787 eV Core-core repulsion = 24217.007277 eV Total energy + Delta-G solvation = -4103.532510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.51803 -42.69034 -41.10191 -39.83717 -37.61574 -36.57741 -33.69161 -33.07801 -32.20960 -31.50248 -30.34746 -28.82233 -26.94145 -25.66978 -24.28140 -23.48172 -22.39666 -21.98424 -21.45693 -21.17242 -19.09055 -18.70147 -17.97198 -17.30603 -17.00037 -16.92692 -16.77770 -16.40802 -16.35321 -16.18897 -15.69664 -15.54134 -15.33893 -15.05658 -14.73264 -14.68138 -14.59989 -14.48826 -13.97947 -13.81320 -13.35673 -13.00998 -12.89137 -12.80274 -12.64196 -12.46062 -12.33690 -12.06798 -11.94023 -11.79934 -11.32258 -11.27679 -10.77710 -10.55119 -10.08027 -9.84808 -9.29715 -8.78175 -7.92368 -5.41639 0.26844 1.36700 1.44068 1.45831 1.54199 1.59502 1.79596 2.18261 2.45132 2.81071 3.17061 3.23634 3.38473 3.68319 3.75131 3.82678 3.96256 4.04525 4.15565 4.16735 4.24230 4.30320 4.34961 4.48064 4.52130 4.53119 4.55953 4.73066 4.82651 4.86643 4.95534 5.03667 5.10354 5.20145 5.33255 5.38933 5.54460 5.59795 5.70481 6.17554 6.23082 6.29209 6.32714 6.89726 7.02776 7.70286 8.24284 9.13308 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.003686 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.485272 B = 7595.091003 C = 8709.965119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.079 0.921 9 N -0.605 5.605 10 C 0.144 3.856 11 C 0.052 3.948 12 O -0.392 6.392 13 C 0.080 3.920 14 H 0.063 0.937 15 C -0.115 4.115 16 C 0.088 3.912 17 N -0.603 5.603 18 C 0.583 3.417 19 O -0.573 6.573 20 C -0.033 4.033 21 C -0.151 4.151 22 C -0.027 4.027 23 F -0.136 7.136 24 C 0.042 3.958 25 N -0.510 5.510 26 H 0.447 0.553 27 C 0.139 3.861 28 C 0.132 3.868 29 H 0.002 0.998 30 H 0.251 0.749 31 H -0.007 1.007 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.142 0.858 40 H 0.235 0.765 41 H 0.063 0.937 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.735 -20.187 -4.097 23.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.244 4.244 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.018 3.982 11 C -0.025 4.025 12 O -0.311 6.311 13 C 0.021 3.979 14 H 0.081 0.919 15 C -0.154 4.154 16 C -0.033 4.033 17 N -0.335 5.335 18 C 0.372 3.628 19 O -0.452 6.452 20 C -0.147 4.147 21 C -0.178 4.178 22 C -0.052 4.052 23 F -0.115 7.115 24 C -0.095 4.095 25 N -0.115 5.115 26 H 0.296 0.704 27 C 0.016 3.984 28 C 0.024 3.976 29 H 0.020 0.980 30 H 0.060 0.940 31 H 0.011 0.989 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.081 0.919 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.160 0.840 40 H 0.251 0.749 41 H 0.081 0.919 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.566 -19.684 -3.850 23.153 hybrid contribution -0.325 1.825 0.520 1.926 sum 11.241 -17.858 -3.330 21.363 Atomic orbital electron populations 1.70154 1.06654 1.25917 1.55559 1.25817 0.96121 1.01488 1.00984 0.85244 0.78052 0.79498 0.77636 1.20535 1.22473 1.19464 1.19520 0.92334 0.84716 1.42476 0.90374 1.44327 1.29746 1.01812 1.57139 1.21373 0.86937 0.98580 0.91272 1.23182 1.00548 0.83990 0.94805 1.87749 1.38377 1.32639 1.72335 1.22512 0.86107 0.96380 0.92893 0.91867 1.21853 0.96475 0.95210 1.01824 1.22599 0.98444 0.91011 0.91260 1.48214 1.62658 1.12583 1.10086 1.17465 0.77280 0.86410 0.81631 1.90858 1.57160 1.46353 1.50853 1.19610 1.12543 0.91194 0.91325 1.21383 1.04738 0.94841 0.96853 1.16647 1.12472 0.89228 0.86839 1.91428 1.95192 1.66370 1.58492 1.22506 1.03833 0.93435 0.89761 1.42570 1.46521 1.10849 1.11603 0.70401 1.21384 0.94235 0.82882 0.99890 1.21455 0.93597 0.88035 0.94474 0.97985 0.93983 0.98877 0.90586 0.92948 0.87423 0.91872 0.86011 0.86286 0.86914 0.83998 0.74891 0.91882 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.26 10.95 21.65 0.24 -55.03 16 2 C -0.05 -2.70 5.04 84.86 0.43 -2.27 16 3 Si 0.97 44.80 29.58 68.60 2.03 46.82 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.26 -14.03 8.92 84.04 0.75 -13.29 16 8 H 0.08 4.04 6.23 -2.91 -0.02 4.02 16 9 N -0.61 -30.22 3.05 -673.91 -2.06 -32.28 16 10 C 0.14 6.96 5.43 86.28 0.47 7.43 16 11 C 0.05 1.94 6.95 72.05 0.50 2.44 16 12 O -0.39 -14.04 10.49 -148.98 -1.56 -15.60 16 13 C 0.08 2.57 2.48 30.66 0.08 2.65 16 14 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 15 C -0.12 -2.44 5.82 30.65 0.18 -2.26 16 16 C 0.09 1.46 5.57 86.44 0.48 1.94 16 17 N -0.60 -17.18 2.98 -823.38 -2.45 -19.63 16 18 C 0.58 18.54 7.62 86.44 0.66 19.19 16 19 O -0.57 -24.29 16.40 -4.35 -0.07 -24.36 16 20 C -0.03 -0.77 6.42 40.36 0.26 -0.51 16 21 C -0.15 -3.75 10.77 22.61 0.24 -3.50 16 22 C -0.03 -0.53 7.98 22.06 0.18 -0.35 16 23 F -0.14 -2.95 17.32 44.97 0.78 -2.17 16 24 C 0.04 0.44 11.90 83.47 0.99 1.44 16 25 N -0.51 -6.10 4.78 -183.37 -0.88 -6.97 16 26 H 0.45 2.15 6.27 -92.71 -0.58 1.57 16 27 C 0.14 5.27 4.47 86.26 0.39 5.65 16 28 C 0.13 5.49 3.03 45.05 0.14 5.63 16 29 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 31 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H 0.08 4.05 6.05 -2.39 -0.01 4.04 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.12 1.22 3.69 -2.39 -0.01 1.21 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 40 H 0.23 0.10 8.06 -2.91 -0.02 0.07 16 41 H 0.06 2.93 6.79 -2.39 -0.02 2.91 16 42 H 0.08 3.00 7.39 -2.39 -0.02 2.98 16 Total: -1.00 -78.27 335.24 2.25 -76.02 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.49 Total: 9.00 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 5.74 Total: 24.19 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -5.15 Total: -113.91 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -1.63 Total: -39.96 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -78.27 2.25 -76.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074302434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.484 kcal (2) G-P(sol) polarization free energy of solvation -78.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds