Wall clock time and date at job start Tue Mar 31 2020 14:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00175 * 2 1 4 4 H 1.48500 * 109.47476 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46934 * 299.99839 * 3 2 1 6 6 H 1.48506 * 109.47248 * 59.99591 * 3 2 1 7 7 C 1.38813 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99877 * 164.83298 * 7 2 1 9 9 N 1.36936 * 119.99799 * 344.83752 * 7 2 1 10 10 C 1.47182 * 121.22650 * 333.64961 * 9 7 2 11 11 C 1.53220 * 108.69515 * 230.96352 * 10 9 7 12 12 O 1.43068 * 109.46411 * 308.43437 * 11 10 9 13 13 C 1.42692 * 113.87445 * 61.62916 * 12 11 10 14 14 H 1.08999 * 108.93254 * 55.60204 * 13 12 11 15 15 C 1.52510 * 110.61795 * 174.66479 * 13 12 11 16 16 C 1.53162 * 109.79287 * 61.27128 * 15 13 12 17 17 N 1.46980 * 108.44272 * 54.52646 * 16 15 13 18 18 C 1.34771 * 120.72251 * 125.48729 * 17 16 15 19 19 O 1.21692 * 120.00156 * 188.88566 * 18 17 16 20 20 C 1.46664 * 119.99683 * 8.88268 * 18 17 16 21 21 C 1.37927 * 126.21151 * 210.22311 * 20 18 17 22 22 C 1.39930 * 107.10830 * 179.88458 * 21 20 18 23 23 F 1.35100 * 126.07668 * 180.18055 * 22 21 20 24 24 C 1.35569 * 107.84182 * 0.37717 * 22 21 20 25 25 N 1.35745 * 108.83147 * 359.76727 * 24 22 21 26 26 H 0.97005 * 125.67775 * 180.02562 * 25 24 22 27 27 C 1.46800 * 118.55957 * 305.45797 * 17 16 15 28 28 C 1.47603 * 121.22651 * 153.67202 * 9 7 2 29 29 H 1.08995 * 110.31704 * 7.65673 * 28 9 7 30 30 H 0.97003 * 119.99900 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.59613 * 111.20060 * 10 9 7 32 32 H 1.09002 * 109.60003 * 350.73001 * 10 9 7 33 33 H 1.08999 * 109.47569 * 188.43394 * 11 10 9 34 34 H 1.09000 * 109.47435 * 68.43410 * 11 10 9 35 35 H 1.08995 * 109.41985 * 181.37360 * 15 13 12 36 36 H 1.09005 * 109.41925 * 301.17405 * 15 13 12 37 37 H 1.09000 * 109.64121 * 294.83801 * 16 15 13 38 38 H 1.09003 * 109.63620 * 174.21041 * 16 15 13 39 39 H 1.08009 * 126.44722 * 359.97438 * 21 20 18 40 40 H 1.07998 * 125.58347 * 179.76170 * 24 22 21 41 41 H 1.08998 * 109.52687 * 294.39441 * 27 17 16 42 42 H 1.08996 * 109.57202 * 174.23087 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0620 -1.2185 -0.2441 9 7 1.3614 -2.3673 0.3112 10 6 0.1666 -2.3694 1.1708 11 6 0.3658 -3.4008 2.2861 12 8 0.7459 -4.6553 1.7130 13 6 1.9777 -4.6123 0.9941 14 1 2.7586 -4.2325 1.6529 15 6 2.3771 -6.0087 0.5289 16 6 1.3070 -6.5671 -0.4139 17 7 1.0994 -5.6036 -1.5043 18 6 1.2086 -5.9868 -2.7918 19 8 1.1952 -5.1530 -3.6780 20 6 1.3437 -7.4088 -3.1247 21 6 2.0150 -7.9312 -4.2104 22 6 1.8937 -9.3234 -4.1384 23 9 2.4128 -10.2135 -5.0122 24 6 1.1590 -9.6200 -3.0383 25 7 0.8188 -8.4637 -2.4138 26 1 0.2935 -8.3929 -1.6014 27 6 0.7698 -4.2150 -1.1606 28 6 1.8346 -3.6673 -0.2031 29 1 2.7932 -3.5484 -0.7078 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7091 -2.6354 0.5788 32 1 0.0287 -1.3803 1.6077 33 1 -0.5652 -3.5215 2.8400 34 1 1.1490 -3.0581 2.9624 35 1 3.3310 -5.9569 0.0041 36 1 2.4758 -6.6645 1.3939 37 1 0.3746 -6.7083 0.1328 38 1 1.6419 -7.5194 -0.8252 39 1 2.5374 -7.3712 -4.9721 40 1 0.8887 -10.6134 -2.7123 41 1 -0.2066 -4.1812 -0.6773 42 1 0.7489 -3.6097 -2.0668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074302435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:41 Heat of formation + Delta-G solvation = -52.946901 kcal Electronic energy + Delta-G solvation = -28412.504996 eV Core-core repulsion = 24308.521147 eV Total energy + Delta-G solvation = -4103.983849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.50592 -42.57490 -41.15457 -39.77600 -37.28792 -36.46436 -33.61346 -33.16284 -32.00312 -31.31266 -30.30386 -29.08594 -26.58591 -25.69176 -24.53439 -23.55667 -22.81424 -21.88819 -21.29658 -20.23231 -19.15159 -18.80588 -17.76619 -17.17413 -17.02599 -16.95393 -16.81656 -16.42351 -16.31466 -16.13942 -15.79821 -15.60989 -15.22100 -14.97700 -14.85680 -14.60016 -14.44590 -14.22768 -13.92389 -13.83957 -13.42781 -13.07838 -12.89032 -12.72183 -12.63833 -12.49504 -12.29570 -12.08359 -11.88516 -11.77601 -11.28285 -11.21115 -10.78650 -10.54761 -10.03368 -9.83325 -9.27851 -8.72821 -7.94297 -5.42226 0.30567 1.38462 1.42046 1.44677 1.54467 1.71352 1.78796 2.25860 2.44523 2.86160 3.20677 3.24618 3.42204 3.70744 3.83990 3.90167 4.06388 4.09830 4.11281 4.21557 4.26218 4.35898 4.44039 4.51004 4.57998 4.59315 4.71598 4.79562 4.85610 4.89287 4.94508 5.01069 5.18807 5.27120 5.32688 5.45551 5.55094 5.60429 5.73051 6.24352 6.26230 6.33581 6.35081 6.94619 7.03671 7.69511 8.22771 9.10244 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.003479 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.632650 B = 8045.407332 C = 8876.373726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.044 4.044 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.295 1.295 6 H -0.284 1.284 7 C -0.266 4.266 8 H 0.065 0.935 9 N -0.603 5.603 10 C 0.143 3.857 11 C 0.052 3.948 12 O -0.379 6.379 13 C 0.086 3.914 14 H 0.050 0.950 15 C -0.115 4.115 16 C 0.098 3.902 17 N -0.599 5.599 18 C 0.581 3.419 19 O -0.578 6.578 20 C -0.032 4.032 21 C -0.151 4.151 22 C -0.026 4.026 23 F -0.135 7.135 24 C 0.042 3.958 25 N -0.509 5.509 26 H 0.444 0.556 27 C 0.125 3.875 28 C 0.130 3.870 29 H 0.060 0.940 30 H 0.252 0.748 31 H 0.004 0.996 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.233 0.767 41 H 0.061 0.939 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 -22.334 3.381 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.240 4.240 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.211 1.211 7 C -0.396 4.396 8 H 0.083 0.917 9 N -0.326 5.326 10 C 0.018 3.982 11 C -0.025 4.025 12 O -0.298 6.298 13 C 0.027 3.973 14 H 0.068 0.932 15 C -0.153 4.153 16 C -0.024 4.024 17 N -0.332 5.332 18 C 0.370 3.630 19 O -0.458 6.458 20 C -0.146 4.146 21 C -0.178 4.178 22 C -0.051 4.051 23 F -0.115 7.115 24 C -0.096 4.096 25 N -0.110 5.110 26 H 0.288 0.712 27 C 0.001 3.999 28 C 0.022 3.978 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.130 0.870 39 H 0.161 0.839 40 H 0.249 0.751 41 H 0.079 0.921 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.322 -21.850 3.101 22.108 hybrid contribution 0.217 1.998 -0.448 2.059 sum 1.539 -19.851 2.653 20.087 Atomic orbital electron populations 1.70152 1.06479 1.25971 1.54987 1.25776 0.96147 1.01363 1.00748 0.85197 0.78539 0.79755 0.76878 1.19266 1.22205 1.21052 1.19487 0.92241 0.85377 1.42452 0.91710 1.44539 1.31928 1.01617 1.54520 1.21344 0.87483 0.98551 0.90843 1.23165 1.00437 0.84088 0.94846 1.87710 1.40081 1.31621 1.70370 1.22218 0.86595 0.96337 0.92197 0.93199 1.21828 0.98748 0.94108 1.00637 1.22252 1.00863 0.91817 0.87418 1.48204 1.68456 1.10980 1.05510 1.17515 0.76227 0.86864 0.82393 1.90845 1.52599 1.53805 1.48546 1.19630 1.09961 0.86933 0.98070 1.21368 1.03995 0.93642 0.98793 1.16609 1.07785 0.86231 0.94502 1.91427 1.85828 1.66480 1.67717 1.22436 1.00583 0.92658 0.93901 1.42144 1.41457 1.04068 1.23285 0.71166 1.21813 0.99177 0.80626 0.98316 1.21757 0.95689 0.86664 0.93654 0.92168 0.93885 0.97815 0.91328 0.87147 0.93698 0.89633 0.86436 0.88713 0.87013 0.83878 0.75093 0.92092 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.22 11.04 21.65 0.24 -53.98 16 2 C -0.04 -2.46 5.00 84.86 0.42 -2.04 16 3 Si 0.97 44.93 29.58 68.60 2.03 46.96 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.27 -14.59 9.70 84.03 0.82 -13.78 16 8 H 0.07 3.53 7.87 -2.91 -0.02 3.51 16 9 N -0.60 -29.64 2.72 -672.34 -1.83 -31.46 16 10 C 0.14 6.61 4.93 86.32 0.43 7.03 16 11 C 0.05 1.83 6.98 72.06 0.50 2.33 16 12 O -0.38 -12.10 9.58 -148.98 -1.43 -13.53 16 13 C 0.09 2.69 2.72 30.49 0.08 2.77 16 14 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 15 C -0.11 -2.39 5.82 30.49 0.18 -2.21 16 16 C 0.10 1.89 5.16 86.34 0.45 2.33 16 17 N -0.60 -18.20 2.96 -823.64 -2.44 -20.64 16 18 C 0.58 19.27 7.59 86.44 0.66 19.92 16 19 O -0.58 -25.46 16.45 -4.32 -0.07 -25.54 16 20 C -0.03 -0.77 6.13 40.36 0.25 -0.52 16 21 C -0.15 -3.76 10.78 22.61 0.24 -3.51 16 22 C -0.03 -0.52 7.98 22.06 0.18 -0.35 16 23 F -0.14 -2.95 17.32 44.97 0.78 -2.17 16 24 C 0.04 0.48 11.90 83.47 0.99 1.47 16 25 N -0.51 -6.87 4.69 -183.38 -0.86 -7.73 16 26 H 0.44 3.37 7.17 -92.70 -0.66 2.70 16 27 C 0.13 5.07 5.63 86.43 0.49 5.56 16 28 C 0.13 5.31 3.03 44.95 0.14 5.45 16 29 H 0.06 2.61 7.99 -2.39 -0.02 2.59 16 30 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.00 0.19 7.17 -2.39 -0.02 0.17 16 32 H 0.07 3.57 6.08 -2.39 -0.01 3.56 16 33 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.09 1.61 7.94 -2.39 -0.02 1.59 16 38 H 0.11 1.44 4.80 -2.39 -0.01 1.43 16 39 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 40 H 0.23 0.36 8.06 -2.91 -0.02 0.33 16 41 H 0.06 2.58 6.56 -2.39 -0.02 2.56 16 42 H 0.04 2.24 7.01 -2.39 -0.02 2.23 16 Total: -1.00 -75.20 336.73 2.64 -72.56 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.41 Total: 11.08 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 5.81 Total: 24.46 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -4.89 Total: -113.82 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.50 Total: -39.07 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -75.20 2.64 -72.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074302435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.608 kcal (2) G-P(sol) polarization free energy of solvation -75.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds