Wall clock time and date at job start Tue Mar 31 2020 14:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99788 * 2 1 4 4 H 1.48501 * 109.47531 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47283 * 120.00184 * 3 2 1 6 6 H 1.48502 * 109.46671 * 239.99606 * 3 2 1 7 7 C 1.38807 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00309 * 211.04306 * 7 2 1 9 9 N 1.36940 * 119.99474 * 31.04230 * 7 2 1 10 10 C 1.47174 * 121.22629 * 24.93195 * 9 7 2 11 11 C 1.53643 * 108.48031 * 129.02214 * 10 9 7 12 12 O 1.43073 * 109.37246 * 51.81746 * 11 10 9 13 13 C 1.42694 * 113.86945 * 298.21933 * 12 11 10 14 14 H 1.09006 * 108.38584 * 304.73012 * 13 12 11 15 15 C 1.52510 * 110.63014 * 185.35864 * 13 12 11 16 16 C 1.53157 * 109.79621 * 298.69971 * 15 13 12 17 17 N 1.46976 * 108.44644 * 305.48022 * 16 15 13 18 18 C 1.34778 * 120.71999 * 234.51519 * 17 16 15 19 19 O 1.21700 * 119.99926 * 174.88232 * 18 17 16 20 20 C 1.46656 * 119.99975 * 354.89241 * 18 17 16 21 21 C 1.37928 * 126.21440 * 140.05547 * 20 18 17 22 22 C 1.39935 * 107.10646 * 179.87631 * 21 20 18 23 23 F 1.35102 * 126.07477 * 180.14169 * 22 21 20 24 24 C 1.35569 * 107.84300 * 0.38555 * 22 21 20 25 25 N 1.35749 * 108.83141 * 359.75656 * 24 22 21 26 26 H 0.97001 * 125.67635 * 179.97438 * 25 24 22 27 27 C 1.46792 * 118.55741 * 54.54317 * 17 16 15 28 28 C 1.47593 * 121.22433 * 205.20389 * 9 7 2 29 29 H 1.09002 * 110.31236 * 353.29769 * 28 9 7 30 30 H 0.96995 * 120.00562 * 185.74080 * 1 2 3 31 31 H 1.08998 * 109.59318 * 248.84387 * 10 9 7 32 32 H 1.09003 * 109.59286 * 9.30948 * 10 9 7 33 33 H 1.08999 * 109.61654 * 291.78238 * 11 10 9 34 34 H 1.08996 * 109.40462 * 171.72263 * 11 10 9 35 35 H 1.09000 * 109.41622 * 178.59437 * 15 13 12 36 36 H 1.08997 * 109.41199 * 58.79959 * 15 13 12 37 37 H 1.09006 * 109.63643 * 185.79166 * 16 15 13 38 38 H 1.09000 * 109.64285 * 65.16890 * 16 15 13 39 39 H 1.07999 * 126.44757 * 0.02562 * 21 20 18 40 40 H 1.07995 * 125.58626 * 179.76031 * 24 22 21 41 41 H 1.09007 * 109.52071 * 185.79642 * 27 17 16 42 42 H 1.08999 * 109.53013 * 65.60507 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7466 -0.0006 5 1 3.1039 1.6965 1.2124 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 2.9742 -1.2688 0.4829 9 7 1.4726 -2.3033 -0.6106 10 6 0.4924 -2.1689 -1.7001 11 6 0.9594 -3.0294 -2.8842 12 8 1.2317 -4.3576 -2.4274 13 6 2.2741 -4.4316 -1.4558 14 1 3.1654 -3.9611 -1.8711 15 6 2.5929 -5.8846 -1.1193 16 6 1.3548 -6.5632 -0.5255 17 7 0.8914 -5.7659 0.6189 18 6 0.7242 -6.3327 1.8302 19 8 0.4302 -5.6434 2.7892 20 6 0.8967 -7.7799 1.9928 21 6 1.5057 -8.4137 3.0557 22 6 1.4475 -9.7889 2.8032 23 9 1.9304 -10.7655 3.6021 24 6 0.8252 -9.9665 1.6120 25 7 0.4855 -8.7520 1.1096 26 1 0.0294 -8.5954 0.2680 27 6 0.6141 -4.3391 0.4138 28 6 1.8503 -3.6688 -0.1968 29 1 2.6599 -3.6329 0.5323 30 1 -0.4851 -0.8357 0.0840 31 1 -0.4839 -2.5119 -1.3578 32 1 0.4286 -1.1251 -2.0077 33 1 1.8644 -2.6001 -3.3141 34 1 0.1760 -3.0590 -3.6415 35 1 3.4071 -5.9187 -0.3954 36 1 2.8936 -6.4089 -2.0263 37 1 1.6127 -7.5682 -0.1916 38 1 0.5685 -6.6145 -1.2787 39 1 1.9428 -7.9383 3.9213 40 1 0.6313 -10.9183 1.1399 41 1 0.3818 -3.8719 1.3709 42 1 -0.2330 -4.2261 -0.2628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074302436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:45 Heat of formation + Delta-G solvation = -36.581690 kcal Electronic energy + Delta-G solvation = -28461.641316 eV Core-core repulsion = 24358.367116 eV Total energy + Delta-G solvation = -4103.274200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.68272 -41.63696 -39.94441 -38.49767 -36.01919 -34.98242 -32.10702 -31.64578 -31.10099 -29.99848 -29.23843 -27.31593 -25.34271 -23.82090 -23.21940 -22.48184 -21.44221 -20.99237 -20.32602 -18.87322 -18.06911 -17.49167 -16.72916 -15.99939 -15.86239 -15.76593 -15.48700 -15.31365 -15.16018 -14.82406 -14.51904 -14.18099 -13.90992 -13.78791 -13.60975 -13.60501 -13.36456 -12.73936 -12.67471 -12.45997 -12.26877 -11.91163 -11.55476 -11.49808 -10.97339 -10.70822 -10.59501 -10.47924 -10.15908 -10.01881 -9.99123 -9.63141 -9.26976 -9.14824 -8.65691 -8.45232 -8.35212 -7.05242 -6.23735 -3.33663 1.28425 2.20522 2.58503 2.85564 3.27131 3.45134 3.47439 3.65941 4.08524 4.18717 4.44176 4.62234 4.67355 4.73470 4.93356 5.04537 5.06852 5.13778 5.25721 5.32016 5.39832 5.54641 5.55994 5.73169 5.76332 5.80338 5.85086 5.93517 6.03859 6.08185 6.19780 6.24943 6.39197 6.52009 6.60436 6.64949 6.72725 6.89836 6.95037 7.44268 7.62599 7.83580 8.14579 8.40956 8.89943 9.67626 10.09304 11.05141 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021207 B = 0.003461 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.005379 B = 8088.423484 C = 8812.864925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.016 4.016 3 Si 1.060 2.940 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.360 4.360 8 H 0.061 0.939 9 N -0.589 5.589 10 C 0.117 3.883 11 C 0.046 3.954 12 O -0.387 6.387 13 C 0.081 3.919 14 H 0.055 0.945 15 C -0.121 4.121 16 C 0.103 3.897 17 N -0.600 5.600 18 C 0.581 3.419 19 O -0.520 6.520 20 C -0.007 4.007 21 C -0.146 4.146 22 C 0.006 3.994 23 F -0.129 7.129 24 C -0.011 4.011 25 N -0.527 5.527 26 H 0.428 0.572 27 C 0.103 3.897 28 C 0.136 3.864 29 H 0.079 0.921 30 H 0.269 0.731 31 H 0.027 0.973 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.157 0.843 40 H 0.182 0.818 41 H 0.091 0.909 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -18.602 -4.146 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.220 4.220 3 Si 0.889 3.111 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.489 4.489 8 H 0.079 0.921 9 N -0.312 5.312 10 C -0.009 4.009 11 C -0.032 4.032 12 O -0.306 6.306 13 C 0.022 3.978 14 H 0.073 0.927 15 C -0.159 4.159 16 C -0.021 4.021 17 N -0.334 5.334 18 C 0.367 3.633 19 O -0.395 6.395 20 C -0.121 4.121 21 C -0.172 4.172 22 C -0.020 4.020 23 F -0.108 7.108 24 C -0.147 4.147 25 N -0.126 5.126 26 H 0.268 0.732 27 C -0.020 4.020 28 C 0.027 3.973 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.175 0.825 40 H 0.199 0.801 41 H 0.110 0.890 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.756 -16.606 -3.870 17.142 hybrid contribution 0.193 -1.649 -0.075 1.662 sum 1.949 -18.256 -3.945 18.779 Atomic orbital electron populations 1.70804 1.06795 1.30250 1.46069 1.25838 0.96217 1.01521 0.98396 0.83600 0.75026 0.76077 0.76360 1.21047 1.21799 1.21985 1.19917 1.01419 0.89382 1.38148 0.92123 1.44425 1.50661 0.99943 1.36190 1.21689 0.91654 0.99968 0.87581 1.23234 0.99796 0.83063 0.97077 1.87707 1.56047 1.28277 1.58609 1.22227 0.90459 0.94585 0.90565 0.92664 1.21767 0.97580 0.95302 1.01265 1.21857 0.97391 0.94362 0.88464 1.48254 1.65369 1.11406 1.08362 1.17094 0.78068 0.84863 0.83280 1.90888 1.47549 1.62494 1.38535 1.20351 1.09144 0.89359 0.93280 1.21264 1.04814 0.91481 0.99656 1.16456 1.07463 0.85634 0.92413 1.91445 1.86726 1.60395 1.72184 1.21706 1.06160 0.89977 0.96865 1.42020 1.46074 1.05152 1.19313 0.73212 1.22451 0.99975 0.77012 1.02572 1.21622 0.95645 0.86220 0.93787 0.90311 0.92055 0.95539 0.89533 0.93517 0.89859 0.90120 0.90178 0.90297 0.90438 0.82527 0.80137 0.89026 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 12.50 55.49 0.69 -25.31 16 2 C -0.02 -0.44 4.55 -17.43 -0.08 -0.52 16 3 Si 1.06 24.45 30.02 -169.99 -5.10 19.34 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.36 -9.65 9.53 -15.06 -0.14 -9.80 16 8 H 0.06 1.65 7.99 -52.49 -0.42 1.24 16 9 N -0.59 -13.86 2.58 -163.62 -0.42 -14.28 16 10 C 0.12 2.54 4.52 -3.34 -0.02 2.53 16 11 C 0.05 0.82 6.99 37.49 0.26 1.08 16 12 O -0.39 -6.56 9.59 -35.23 -0.34 -6.90 16 13 C 0.08 1.33 2.73 -26.88 -0.07 1.26 16 14 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 15 C -0.12 -1.48 5.82 -26.90 -0.16 -1.64 16 16 C 0.10 1.17 5.42 -3.70 -0.02 1.15 16 17 N -0.60 -9.15 2.96 -174.33 -0.52 -9.67 16 18 C 0.58 9.41 7.59 -12.86 -0.10 9.31 16 19 O -0.52 -10.68 16.49 5.19 0.09 -10.60 16 20 C -0.01 -0.08 5.90 -81.98 -0.48 -0.57 16 21 C -0.15 -1.85 10.84 -39.06 -0.42 -2.27 16 22 C 0.01 0.07 7.98 -39.90 -0.32 -0.25 16 23 F -0.13 -1.53 17.32 2.25 0.04 -1.49 16 24 C -0.01 -0.09 11.90 -16.77 -0.20 -0.29 16 25 N -0.53 -4.60 4.66 -9.31 -0.04 -4.65 16 26 H 0.43 2.66 7.79 -40.82 -0.32 2.34 16 27 C 0.10 1.97 5.63 -3.72 -0.02 1.95 16 28 C 0.14 2.70 3.03 -67.07 -0.20 2.49 16 29 H 0.08 1.67 7.99 -51.93 -0.42 1.25 16 30 H 0.27 7.86 7.15 -40.82 -0.29 7.57 16 31 H 0.03 0.60 6.95 -51.93 -0.36 0.24 16 32 H 0.09 2.10 6.50 -51.93 -0.34 1.76 16 33 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.71 4.98 -51.93 -0.26 0.45 16 38 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 39 H 0.16 1.97 8.06 -52.49 -0.42 1.54 16 40 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.09 2.06 6.99 -51.93 -0.36 1.70 16 42 H 0.07 1.36 6.54 -51.93 -0.34 1.02 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -32.09 337.48 -7.76 -39.85 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.27 Total: 4.18 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -1.97 Total: 4.43 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.29 Total: -53.90 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.25 Total: -17.50 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.10 Total: 19.34 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.09 -7.76 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074302436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.268 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds