Wall clock time and date at job start Tue Mar 31 2020 14:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00424 * 2 1 4 4 H 1.48496 * 109.47071 * 240.00045 * 3 2 1 5 5 H 1.48502 * 109.46759 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47280 * 119.99631 * 3 2 1 7 7 C 1.38813 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00200 * 165.15569 * 7 2 1 9 9 N 1.36945 * 119.99891 * 345.14662 * 7 2 1 10 10 C 1.47345 * 121.30488 * 331.28100 * 9 7 2 11 11 C 1.53195 * 108.79677 * 230.22002 * 10 9 7 12 12 O 1.43151 * 109.73478 * 308.77611 * 11 10 9 13 13 C 1.42595 * 113.63732 * 61.69047 * 12 11 10 14 14 H 1.09004 * 108.94759 * 55.86133 * 13 12 11 15 15 C 1.52784 * 111.12092 * 176.38985 * 13 12 11 16 16 C 1.53367 * 108.81681 * 182.55310 * 15 13 12 17 17 N 1.46839 * 109.25303 * 306.18442 * 16 15 13 18 18 C 1.34778 * 120.40335 * 232.21125 * 17 16 15 19 19 O 1.21699 * 119.99916 * 174.28665 * 18 17 16 20 20 C 1.46659 * 120.00036 * 354.28429 * 18 17 16 21 21 C 1.37926 * 126.21855 * 159.42394 * 20 18 17 22 22 C 1.39920 * 107.11056 * 179.97438 * 21 20 18 23 23 F 1.35110 * 126.07533 * 180.02562 * 22 21 20 24 24 C 1.35567 * 107.84656 * 0.02562 * 22 21 20 25 25 N 1.35746 * 108.82763 * 359.72992 * 24 22 21 26 26 H 0.97003 * 125.67571 * 180.29270 * 25 24 22 27 27 C 1.47126 * 119.18877 * 52.22935 * 17 16 15 28 28 C 1.46871 * 121.29750 * 151.25229 * 9 7 2 29 29 H 1.09007 * 109.65311 * 248.37996 * 28 9 7 30 30 H 0.96998 * 119.99520 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58250 * 350.01003 * 10 9 7 32 32 H 1.08998 * 109.58596 * 110.42540 * 10 9 7 33 33 H 1.08997 * 109.43049 * 68.85742 * 11 10 9 34 34 H 1.09002 * 109.42580 * 188.75060 * 11 10 9 35 35 H 1.09008 * 109.57691 * 62.75576 * 15 13 12 36 36 H 1.08996 * 109.58663 * 302.35928 * 15 13 12 37 37 H 1.09005 * 109.50548 * 66.11099 * 16 15 13 38 38 H 1.08998 * 109.50948 * 186.19818 * 16 15 13 39 39 H 1.08005 * 126.44206 * 0.02562 * 21 20 18 40 40 H 1.07993 * 125.58292 * 180.02562 * 24 22 21 41 41 H 1.08993 * 109.72803 * 66.44333 * 27 17 16 42 42 H 1.08999 * 109.72743 * 187.12224 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0633 -1.2180 -0.2391 9 7 1.3598 -2.3682 0.3051 10 6 0.1903 -2.3809 1.2013 11 6 0.4036 -3.4516 2.2760 12 8 0.7534 -4.6943 1.6575 13 6 1.9689 -4.6406 0.9138 14 1 2.7690 -4.2937 1.5678 15 6 2.3329 -6.0148 0.3539 16 6 3.6759 -5.9103 -0.3792 17 7 3.6004 -4.8360 -1.3773 18 6 3.9436 -5.0707 -2.6593 19 8 3.7803 -4.2069 -3.5009 20 6 4.5139 -6.3671 -3.0402 21 6 4.5439 -6.9024 -4.3110 22 6 5.1766 -8.1470 -4.2185 23 9 5.4097 -8.9989 -5.2410 24 6 5.5142 -8.3460 -2.9208 25 7 5.1213 -7.2679 -2.1956 26 1 5.2462 -7.1524 -1.2406 27 6 3.1460 -3.5001 -0.9606 28 6 1.8004 -3.6549 -0.2494 29 1 1.0545 -4.0257 -0.9526 30 1 -0.4849 0.8401 -0.0004 31 1 0.0820 -1.4049 1.6744 32 1 -0.7071 -2.6127 0.6277 33 1 1.2069 -3.1401 2.9437 34 1 -0.5151 -3.5785 2.8487 35 1 1.5608 -6.3415 -0.3428 36 1 2.4173 -6.7314 1.1708 37 1 4.4656 -5.6859 0.3380 38 1 3.8937 -6.8555 -0.8764 39 1 4.1533 -6.4463 -5.2087 40 1 6.0178 -9.2173 -2.5290 41 1 3.8739 -3.0599 -0.2792 42 1 3.0280 -2.8619 -1.8363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074302437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:49 Heat of formation + Delta-G solvation = -21.085124 kcal Electronic energy + Delta-G solvation = -28300.395554 eV Core-core repulsion = 24197.793336 eV Total energy + Delta-G solvation = -4102.602218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.68334 -41.76489 -39.80033 -38.44073 -36.29713 -34.78397 -32.17002 -31.56477 -31.13917 -30.18588 -29.24518 -27.10128 -25.54273 -24.17179 -22.96060 -22.10490 -21.27464 -20.87969 -20.35686 -19.74076 -17.95347 -16.94834 -16.80303 -15.99484 -15.91815 -15.53408 -15.40061 -15.28724 -15.18628 -14.80627 -14.45360 -14.11368 -14.01021 -13.74121 -13.61234 -13.43423 -13.18681 -12.95903 -12.76351 -12.47350 -12.01531 -11.90392 -11.47226 -11.07001 -11.01459 -10.95121 -10.68634 -10.36388 -10.30488 -10.08823 -9.99961 -9.68502 -9.16009 -9.08496 -8.64296 -8.58804 -8.43246 -6.77904 -5.89203 -3.36464 1.18384 2.20380 2.61188 2.84546 3.24660 3.33631 3.39373 3.39763 4.08978 4.16012 4.36766 4.54489 4.61566 4.64666 4.93030 5.03910 5.08846 5.20527 5.26568 5.31878 5.35785 5.53055 5.62014 5.72998 5.77519 5.79511 5.99275 6.03226 6.12474 6.20765 6.24390 6.34686 6.50191 6.55687 6.62753 6.77582 6.90348 7.04354 7.36973 7.44034 7.65310 7.80168 8.12083 8.27539 9.04123 9.67227 10.25417 11.18988 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017410 B = 0.003675 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.869168 B = 7616.459850 C = 8773.373281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.010 3.990 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.264 4.264 8 H 0.071 0.929 9 N -0.587 5.587 10 C 0.144 3.856 11 C 0.039 3.961 12 O -0.389 6.389 13 C 0.078 3.922 14 H 0.053 0.947 15 C -0.123 4.123 16 C 0.090 3.910 17 N -0.608 5.608 18 C 0.585 3.415 19 O -0.515 6.515 20 C -0.013 4.013 21 C -0.135 4.135 22 C 0.004 3.996 23 F -0.128 7.128 24 C -0.010 4.010 25 N -0.532 5.532 26 H 0.430 0.570 27 C 0.124 3.876 28 C 0.136 3.864 29 H 0.039 0.961 30 H 0.257 0.743 31 H 0.093 0.907 32 H 0.029 0.971 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.160 0.840 40 H 0.182 0.818 41 H 0.076 0.924 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.439 -16.649 1.420 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.393 4.393 8 H 0.089 0.911 9 N -0.312 5.312 10 C 0.018 3.982 11 C -0.039 4.039 12 O -0.308 6.308 13 C 0.018 3.982 14 H 0.071 0.929 15 C -0.161 4.161 16 C -0.033 4.033 17 N -0.342 5.342 18 C 0.372 3.628 19 O -0.390 6.390 20 C -0.127 4.127 21 C -0.162 4.162 22 C -0.021 4.021 23 F -0.107 7.107 24 C -0.146 4.146 25 N -0.136 5.136 26 H 0.275 0.725 27 C 0.003 3.997 28 C 0.028 3.972 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.177 0.823 40 H 0.199 0.801 41 H 0.094 0.906 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.137 -16.105 1.120 18.550 hybrid contribution 0.536 0.902 0.300 1.091 sum 9.673 -15.203 1.420 18.075 Atomic orbital electron populations 1.70005 1.05332 1.25925 1.52979 1.25112 0.95327 0.98528 0.99991 0.86346 0.78963 0.83084 0.78269 1.20574 1.21491 1.20908 1.19062 0.91997 0.83972 1.44268 0.91149 1.44000 1.34256 1.01233 1.51677 1.21416 0.89152 0.97564 0.90057 1.23350 0.99075 0.85373 0.96058 1.87740 1.41204 1.33684 1.68176 1.22401 0.87319 0.94625 0.93856 0.92926 1.21809 0.96467 0.97588 1.00267 1.22180 0.98762 0.90751 0.91654 1.48194 1.65767 1.12571 1.07671 1.16997 0.78406 0.85052 0.82300 1.90895 1.54399 1.44622 1.49066 1.20376 1.08451 0.93628 0.90265 1.21322 1.03586 0.94385 0.96885 1.16493 1.09343 0.91468 0.84813 1.91451 1.93532 1.68826 1.56912 1.21799 1.07317 0.94307 0.91162 1.42699 1.45354 1.14847 1.10682 0.72462 1.21860 0.95619 0.80931 1.01245 1.21303 0.94207 0.88805 0.92865 0.94334 0.93343 0.88855 0.95283 0.94071 0.89983 0.90490 0.90021 0.90702 0.89395 0.82267 0.80086 0.90604 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 11.23 55.49 0.62 -24.79 16 2 C 0.01 0.27 4.99 -17.43 -0.09 0.19 16 3 Si 0.90 21.15 29.58 -169.99 -5.03 16.12 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.26 -6.88 8.84 -15.06 -0.13 -7.01 16 8 H 0.07 1.77 6.31 -52.48 -0.33 1.44 16 9 N -0.59 -14.15 3.03 -164.36 -0.50 -14.65 16 10 C 0.14 3.33 5.41 -3.48 -0.02 3.31 16 11 C 0.04 0.74 6.95 37.26 0.26 1.00 16 12 O -0.39 -7.30 10.49 -35.23 -0.37 -7.67 16 13 C 0.08 1.32 2.48 -26.64 -0.07 1.25 16 14 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 15 C -0.12 -1.53 5.82 -26.65 -0.16 -1.68 16 16 C 0.09 0.93 5.30 -3.67 -0.02 0.91 16 17 N -0.61 -8.94 2.98 -174.24 -0.52 -9.46 16 18 C 0.59 9.26 7.63 -12.86 -0.10 9.16 16 19 O -0.52 -10.31 16.35 5.19 0.08 -10.22 16 20 C -0.01 -0.16 6.46 -81.98 -0.53 -0.69 16 21 C -0.13 -1.70 10.72 -39.07 -0.42 -2.12 16 22 C 0.00 0.05 7.98 -39.91 -0.32 -0.27 16 23 F -0.13 -1.51 17.32 2.25 0.04 -1.47 16 24 C -0.01 -0.08 11.90 -16.77 -0.20 -0.28 16 25 N -0.53 -4.45 4.81 -9.32 -0.04 -4.49 16 26 H 0.43 2.42 6.07 -40.82 -0.25 2.17 16 27 C 0.12 2.31 4.51 -3.71 -0.02 2.29 16 28 C 0.14 2.78 3.03 -67.53 -0.20 2.57 16 29 H 0.04 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.09 2.35 6.31 -51.93 -0.33 2.03 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.69 3.97 -51.93 -0.21 0.48 16 39 H 0.16 2.00 8.06 -52.48 -0.42 1.57 16 40 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.08 1.38 7.37 -51.93 -0.38 0.99 16 42 H 0.11 2.32 6.80 -51.93 -0.35 1.97 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -32.31 335.50 -7.87 -40.18 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.21 Total: 2.76 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -2.01 Total: 8.64 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.44 Total: -53.39 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.28 Total: -17.90 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.31 -7.87 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074302437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.096 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds