Wall clock time and date at job start Tue Mar 31 2020 14:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00424 * 2 1 4 4 H 1.48496 * 109.47071 * 240.00045 * 3 2 1 5 5 H 1.48502 * 109.46759 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47280 * 119.99631 * 3 2 1 7 7 C 1.38813 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00200 * 165.15569 * 7 2 1 9 9 N 1.36945 * 119.99891 * 345.14662 * 7 2 1 10 10 C 1.47345 * 121.30488 * 331.28100 * 9 7 2 11 11 C 1.53195 * 108.79677 * 230.22002 * 10 9 7 12 12 O 1.43151 * 109.73478 * 308.77611 * 11 10 9 13 13 C 1.42595 * 113.63732 * 61.69047 * 12 11 10 14 14 H 1.09004 * 108.94759 * 55.86133 * 13 12 11 15 15 C 1.52784 * 111.12092 * 176.38985 * 13 12 11 16 16 C 1.53367 * 108.81681 * 182.55310 * 15 13 12 17 17 N 1.46839 * 109.25303 * 306.18442 * 16 15 13 18 18 C 1.34778 * 120.40335 * 232.21125 * 17 16 15 19 19 O 1.21699 * 119.99916 * 174.28665 * 18 17 16 20 20 C 1.46659 * 120.00036 * 354.28429 * 18 17 16 21 21 C 1.37926 * 126.21855 * 159.42394 * 20 18 17 22 22 C 1.39920 * 107.11056 * 179.97438 * 21 20 18 23 23 F 1.35110 * 126.07533 * 180.02562 * 22 21 20 24 24 C 1.35567 * 107.84656 * 0.02562 * 22 21 20 25 25 N 1.35746 * 108.82763 * 359.72992 * 24 22 21 26 26 H 0.97003 * 125.67571 * 180.29270 * 25 24 22 27 27 C 1.47126 * 119.18877 * 52.22935 * 17 16 15 28 28 C 1.46871 * 121.29750 * 151.25229 * 9 7 2 29 29 H 1.09007 * 109.65311 * 248.37996 * 28 9 7 30 30 H 0.96998 * 119.99520 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58250 * 350.01003 * 10 9 7 32 32 H 1.08998 * 109.58596 * 110.42540 * 10 9 7 33 33 H 1.08997 * 109.43049 * 68.85742 * 11 10 9 34 34 H 1.09002 * 109.42580 * 188.75060 * 11 10 9 35 35 H 1.09008 * 109.57691 * 62.75576 * 15 13 12 36 36 H 1.08996 * 109.58663 * 302.35928 * 15 13 12 37 37 H 1.09005 * 109.50548 * 66.11099 * 16 15 13 38 38 H 1.08998 * 109.50948 * 186.19818 * 16 15 13 39 39 H 1.08005 * 126.44206 * 0.02562 * 21 20 18 40 40 H 1.07993 * 125.58292 * 180.02562 * 24 22 21 41 41 H 1.08993 * 109.72803 * 66.44333 * 27 17 16 42 42 H 1.08999 * 109.72743 * 187.12224 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0633 -1.2180 -0.2391 9 7 1.3598 -2.3682 0.3051 10 6 0.1903 -2.3809 1.2013 11 6 0.4036 -3.4516 2.2760 12 8 0.7534 -4.6943 1.6575 13 6 1.9689 -4.6406 0.9138 14 1 2.7690 -4.2937 1.5678 15 6 2.3329 -6.0148 0.3539 16 6 3.6759 -5.9103 -0.3792 17 7 3.6004 -4.8360 -1.3773 18 6 3.9436 -5.0707 -2.6593 19 8 3.7803 -4.2069 -3.5009 20 6 4.5139 -6.3671 -3.0402 21 6 4.5439 -6.9024 -4.3110 22 6 5.1766 -8.1470 -4.2185 23 9 5.4097 -8.9989 -5.2410 24 6 5.5142 -8.3460 -2.9208 25 7 5.1213 -7.2679 -2.1956 26 1 5.2462 -7.1524 -1.2406 27 6 3.1460 -3.5001 -0.9606 28 6 1.8004 -3.6549 -0.2494 29 1 1.0545 -4.0257 -0.9526 30 1 -0.4849 0.8401 -0.0004 31 1 0.0820 -1.4049 1.6744 32 1 -0.7071 -2.6127 0.6277 33 1 1.2069 -3.1401 2.9437 34 1 -0.5151 -3.5785 2.8487 35 1 1.5608 -6.3415 -0.3428 36 1 2.4173 -6.7314 1.1708 37 1 4.4656 -5.6859 0.3380 38 1 3.8937 -6.8555 -0.8764 39 1 4.1533 -6.4463 -5.2087 40 1 6.0178 -9.2173 -2.5290 41 1 3.8739 -3.0599 -0.2792 42 1 3.0280 -2.8619 -1.8363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074302437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:48 Heat of formation + Delta-G solvation = -44.025665 kcal Electronic energy + Delta-G solvation = -28301.390331 eV Core-core repulsion = 24197.793336 eV Total energy + Delta-G solvation = -4103.596995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.51494 -42.68713 -41.09481 -39.83044 -37.61770 -36.56101 -33.68635 -33.09823 -32.20161 -31.50388 -30.34293 -28.80842 -26.93519 -25.68488 -24.27439 -23.48114 -22.39345 -21.97951 -21.45364 -21.19140 -19.05973 -18.68963 -17.93949 -17.28611 -16.98958 -16.93353 -16.79426 -16.38824 -16.34289 -16.21462 -15.71223 -15.53872 -15.33597 -15.05129 -14.73724 -14.68073 -14.57219 -14.49489 -14.01250 -13.81541 -13.35006 -13.04334 -12.84130 -12.79096 -12.63177 -12.48366 -12.34640 -12.11508 -11.95967 -11.80821 -11.31514 -11.26015 -10.76694 -10.54469 -10.08039 -9.84422 -9.30016 -8.75121 -7.93532 -5.43804 0.23797 1.37491 1.44794 1.46374 1.52648 1.61352 1.85171 2.17211 2.45353 2.80335 3.18109 3.23364 3.38230 3.68306 3.75631 3.83114 3.96394 4.04135 4.15021 4.16670 4.24232 4.29750 4.34731 4.47740 4.51556 4.52493 4.56113 4.73544 4.81845 4.86787 4.96530 5.04236 5.09044 5.20437 5.31731 5.39206 5.51777 5.59404 5.70581 6.18593 6.24009 6.29472 6.32045 6.91001 7.02548 7.69805 8.25768 9.12714 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017410 B = 0.003675 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.869168 B = 7616.459850 C = 8773.373281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.967 3.033 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.266 4.266 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.147 3.853 11 C 0.053 3.947 12 O -0.392 6.392 13 C 0.082 3.918 14 H 0.065 0.935 15 C -0.115 4.115 16 C 0.088 3.912 17 N -0.605 5.605 18 C 0.582 3.418 19 O -0.574 6.574 20 C -0.035 4.035 21 C -0.148 4.148 22 C -0.028 4.028 23 F -0.136 7.136 24 C 0.044 3.956 25 N -0.511 5.511 26 H 0.447 0.553 27 C 0.139 3.861 28 C 0.132 3.868 29 H 0.000 1.000 30 H 0.251 0.749 31 H 0.068 0.932 32 H -0.006 1.006 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.142 0.858 40 H 0.235 0.765 41 H 0.084 0.916 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.303 -20.020 3.799 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.794 3.206 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.395 4.395 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.022 3.978 11 C -0.025 4.025 12 O -0.311 6.311 13 C 0.022 3.978 14 H 0.083 0.917 15 C -0.154 4.154 16 C -0.033 4.033 17 N -0.338 5.338 18 C 0.372 3.628 19 O -0.454 6.454 20 C -0.149 4.149 21 C -0.175 4.175 22 C -0.053 4.053 23 F -0.115 7.115 24 C -0.094 4.094 25 N -0.116 5.116 26 H 0.296 0.704 27 C 0.017 3.983 28 C 0.025 3.975 29 H 0.018 0.982 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.012 0.988 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.160 0.840 40 H 0.251 0.749 41 H 0.102 0.898 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.025 -19.527 3.556 23.206 hybrid contribution -0.359 1.843 -0.524 1.950 sum 11.665 -17.684 3.032 21.401 Atomic orbital electron populations 1.70171 1.06774 1.26110 1.55009 1.25882 0.96048 1.01653 1.00584 0.85355 0.77617 0.79107 0.78472 1.20641 1.22053 1.19463 1.19427 0.92477 0.84878 1.42720 0.90548 1.44304 1.34228 1.02171 1.52275 1.21281 0.87794 0.98064 0.90710 1.23173 1.00891 0.83977 0.94420 1.87750 1.42208 1.33044 1.68147 1.22509 0.86980 0.96255 0.92038 0.91703 1.21856 0.96979 0.95328 1.01216 1.22591 0.98835 0.90571 0.91351 1.48194 1.64963 1.12148 1.08457 1.17465 0.77681 0.85734 0.81876 1.90858 1.56949 1.46825 1.50721 1.19611 1.11079 0.93195 0.90982 1.21400 1.03784 0.95591 0.96745 1.16654 1.11236 0.91190 0.86193 1.91432 1.93713 1.68800 1.57531 1.22521 1.03234 0.94184 0.89453 1.42614 1.43965 1.13827 1.11185 0.70405 1.21376 0.94956 0.82867 0.99144 1.21469 0.93899 0.88121 0.94054 0.98216 0.93972 0.91351 0.98824 0.92799 0.87379 0.91975 0.85900 0.86787 0.86272 0.83967 0.74866 0.89794 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.52 11.23 21.65 0.24 -55.28 16 2 C -0.05 -2.54 4.99 84.86 0.42 -2.12 16 3 Si 0.97 44.71 29.58 68.60 2.03 46.73 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.27 -14.29 8.84 84.03 0.74 -13.55 16 8 H 0.08 3.94 6.31 -2.91 -0.02 3.92 16 9 N -0.60 -30.24 3.03 -673.90 -2.04 -32.28 16 10 C 0.15 7.10 5.41 86.28 0.47 7.56 16 11 C 0.05 1.95 6.95 72.05 0.50 2.45 16 12 O -0.39 -14.00 10.49 -148.98 -1.56 -15.57 16 13 C 0.08 2.60 2.48 30.66 0.08 2.68 16 14 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 15 C -0.12 -2.44 5.82 30.65 0.18 -2.26 16 16 C 0.09 1.44 5.30 86.44 0.46 1.90 16 17 N -0.61 -17.27 2.98 -823.39 -2.45 -19.72 16 18 C 0.58 18.66 7.63 86.44 0.66 19.32 16 19 O -0.57 -24.61 16.35 -4.35 -0.07 -24.69 16 20 C -0.03 -0.82 6.46 40.36 0.26 -0.56 16 21 C -0.15 -3.66 10.72 22.60 0.24 -3.42 16 22 C -0.03 -0.54 7.98 22.06 0.18 -0.37 16 23 F -0.14 -2.93 17.32 44.97 0.78 -2.15 16 24 C 0.04 0.46 11.90 83.47 0.99 1.45 16 25 N -0.51 -6.11 4.81 -183.39 -0.88 -6.99 16 26 H 0.45 2.21 6.07 -92.71 -0.56 1.65 16 27 C 0.14 5.30 4.51 86.26 0.39 5.69 16 28 C 0.13 5.53 3.03 45.05 0.14 5.66 16 29 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 30 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.07 3.61 6.31 -2.39 -0.02 3.60 16 32 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 35 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.12 1.22 3.97 -2.39 -0.01 1.21 16 39 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 40 H 0.24 0.07 8.06 -2.91 -0.02 0.05 16 41 H 0.08 3.03 7.37 -2.39 -0.02 3.01 16 42 H 0.06 2.91 6.80 -2.39 -0.02 2.89 16 Total: -1.00 -78.98 335.50 2.25 -76.73 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.51 Total: 8.78 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 5.70 Total: 24.44 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -5.14 Total: -114.28 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -1.63 Total: -40.25 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -78.98 2.25 -76.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074302437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.706 kcal (2) G-P(sol) polarization free energy of solvation -78.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds