Wall clock time and date at job start Tue Mar 31 2020 14:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40471 * 119.85160 * 2 1 4 4 C 1.36026 * 119.69297 * 179.97438 * 3 2 1 5 5 C 1.40935 * 119.32979 * 359.97438 * 4 3 2 6 6 N 1.32551 * 132.32691 * 179.97438 * 5 4 3 7 7 C 1.33520 * 109.15975 * 180.02562 * 6 5 4 8 8 C 1.35108 * 108.62181 * 359.97438 * 7 6 5 9 9 C 1.50699 * 126.40507 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.47179 * 95.02667 * 9 8 7 11 11 C 1.39779 * 119.99819 * 179.97438 * 10 9 8 12 12 C 1.38949 * 120.00373 * 180.02562 * 11 10 9 13 13 C 1.38007 * 119.99518 * 179.97438 * 12 11 10 14 14 C 1.38902 * 120.00593 * 0.02562 * 13 12 11 15 15 O 1.35796 * 119.99558 * 179.97438 * 14 13 12 16 16 C 1.34814 * 116.99905 * 5.54231 * 15 14 13 17 17 H 1.08001 * 119.99962 * 354.94516 * 16 15 14 18 18 C 1.38627 * 119.99781 * 174.94495 * 16 15 14 19 19 N 1.31573 * 120.00047 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99754 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47347 * 89.99716 * 20 18 16 22 22 H 1.48501 * 109.46925 * 209.99664 * 20 18 16 23 23 H 1.48504 * 109.47077 * 329.99706 * 20 18 16 24 24 C 1.38899 * 120.00959 * 0.23780 * 14 13 12 25 25 C 1.38012 * 120.00613 * 359.48059 * 24 14 13 26 26 N 1.36830 * 107.17910 * 0.24470 * 8 7 6 27 27 C 1.34950 * 119.85074 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46992 * 89.99978 * 1 2 3 29 29 H 1.08993 * 109.47221 * 209.99952 * 1 2 3 30 30 H 1.09002 * 109.46944 * 330.00543 * 1 2 3 31 31 H 1.07996 * 120.15637 * 359.95900 * 3 2 1 32 32 H 1.08002 * 120.33346 * 179.97438 * 4 3 2 33 33 H 1.07997 * 125.69079 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47519 * 335.02463 * 9 8 7 35 35 H 1.09000 * 109.47011 * 215.02849 * 9 8 7 36 36 H 0.96996 * 119.99685 * 0.02562 * 10 9 8 37 37 H 1.07999 * 120.00601 * 359.95851 * 12 11 10 38 38 H 1.08001 * 119.99981 * 180.02562 * 13 12 11 39 39 H 0.97001 * 120.00236 * 180.02562 * 19 18 16 40 40 H 1.08002 * 119.99383 * 179.74343 * 24 14 13 41 41 H 1.08001 * 120.00015 * 180.22690 * 25 24 14 42 42 H 1.08003 * 119.69500 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2183 0.0000 4 6 3.5665 1.2146 0.0005 5 6 4.2534 -0.0160 0.0016 6 7 5.5441 -0.3177 0.0019 7 6 5.6838 -1.6456 0.0025 8 6 4.4556 -2.2086 0.0032 9 6 4.1479 -3.6838 0.0035 10 7 3.9305 -4.1371 1.3796 11 6 3.6277 -5.4777 1.6342 12 6 3.4209 -5.9076 2.9393 13 6 3.1214 -7.2312 3.1904 14 6 3.0271 -8.1337 2.1388 15 8 2.7329 -9.4361 2.3862 16 6 2.4313 -9.7644 3.6585 17 1 2.5105 -9.0238 4.4405 18 6 2.0196 -11.0526 3.9628 19 7 1.9227 -11.9547 3.0100 20 14 1.6010 -11.5073 5.7256 21 1 0.1589 -11.2542 5.9730 22 1 1.8967 -12.9453 5.9494 23 1 2.4148 -10.6840 6.6558 24 6 3.2392 -7.7053 0.8346 25 6 3.5330 -6.3806 0.5824 26 7 3.5435 -1.1886 -0.0026 27 6 2.1787 -1.1705 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6663 2.1537 -0.0007 32 1 4.1145 2.1452 0.0001 33 1 6.6220 -2.1805 0.0032 34 1 4.9854 -4.2298 -0.4308 35 1 3.2497 -3.8678 -0.5859 36 1 3.9960 -3.5067 2.1139 37 1 3.4948 -5.2061 3.7571 38 1 2.9602 -7.5653 4.2047 39 1 1.6342 -12.8561 3.2229 40 1 3.1699 -8.4081 0.0175 41 1 3.6942 -6.0469 -0.4320 42 1 1.6313 -2.1015 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116326777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:54 Heat of formation + Delta-G solvation = 93.390960 kcal Electronic energy + Delta-G solvation = -25150.895337 eV Core-core repulsion = 21484.026399 eV Total energy + Delta-G solvation = -3666.868938 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.12241 -39.06319 -38.17927 -37.12883 -34.84979 -33.68515 -32.46230 -32.07959 -30.41138 -29.92852 -27.42065 -27.09645 -25.81834 -24.72828 -23.38607 -22.40862 -22.12973 -21.06947 -20.65222 -18.04314 -17.65143 -17.17209 -16.99992 -16.41801 -16.20516 -15.52979 -15.12423 -15.07770 -14.45003 -14.11979 -13.94608 -13.89817 -13.85582 -13.59077 -13.37328 -13.16679 -12.79626 -12.62729 -12.57762 -12.43856 -11.87926 -11.72722 -11.58937 -11.53621 -11.40160 -11.16265 -10.97538 -10.60473 -10.38041 -10.33643 -9.27301 -9.23378 -8.97967 -8.48480 -8.20909 -8.10142 -6.45917 -6.34511 -3.91778 0.42722 0.88451 2.16628 2.25971 2.48886 2.52823 3.17227 3.18018 3.20753 3.22464 3.86730 3.94547 4.04457 4.12630 4.28820 4.41638 4.59355 4.64005 4.77031 4.94666 5.09886 5.10781 5.14649 5.18068 5.33807 5.37256 5.44992 5.53077 5.58894 5.62091 5.73188 5.83388 5.86580 6.16417 6.18716 6.20123 6.35017 6.49325 6.75044 6.82226 6.85815 7.09134 7.29400 7.41082 7.57910 7.60251 7.89800 8.09786 8.15822 9.11489 9.85359 10.84218 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022020 B = 0.002217 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.243051 B =12625.236850 C =13164.679533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.112 4.112 3 C -0.096 4.096 4 C -0.080 4.080 5 C 0.220 3.780 6 N -0.494 5.494 7 C 0.054 3.946 8 C -0.080 4.080 9 C 0.217 3.783 10 N -0.758 5.758 11 C 0.121 3.879 12 C -0.139 4.139 13 C -0.190 4.190 14 C 0.115 3.885 15 O -0.187 6.187 16 C -0.387 4.387 17 H 0.088 0.912 18 C 0.036 3.964 19 N -0.868 5.868 20 Si 0.938 3.062 21 H -0.275 1.275 22 H -0.279 1.279 23 H -0.269 1.269 24 C -0.151 4.151 25 C -0.145 4.145 26 N -0.350 5.350 27 C 0.059 3.941 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.151 0.849 33 H 0.183 0.817 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.391 0.609 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.267 0.733 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 25.046 -6.562 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.115 4.115 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.023 4.023 6 N -0.214 5.214 7 C -0.099 4.099 8 C -0.193 4.193 9 C 0.091 3.909 10 N -0.395 5.395 11 C 0.024 3.976 12 C -0.161 4.161 13 C -0.210 4.210 14 C 0.062 3.938 15 O -0.092 6.092 16 C -0.464 4.464 17 H 0.106 0.894 18 C -0.167 4.167 19 N -0.505 5.505 20 Si 0.763 3.237 21 H -0.201 1.201 22 H -0.204 1.204 23 H -0.194 1.194 24 C -0.170 4.170 25 C -0.167 4.167 26 N -0.021 5.021 27 C -0.064 4.064 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.160 0.840 32 H 0.169 0.831 33 H 0.200 0.800 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.225 0.775 37 H 0.123 0.877 38 H 0.145 0.855 39 H 0.077 0.923 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.166 25.047 -6.932 25.989 hybrid contribution -0.776 -0.555 1.236 1.561 sum -0.942 24.492 -5.696 25.163 Atomic orbital electron populations 1.20693 0.88889 1.03665 1.02999 1.19496 0.97392 0.91571 1.03020 1.20999 0.93386 0.98145 0.99466 1.20260 0.93620 0.94737 1.01392 1.20978 0.87815 0.87213 1.06248 1.70788 1.13288 1.14534 1.22774 1.22398 0.96804 0.89741 1.00941 1.21283 0.88713 0.90695 1.18566 1.19306 1.01005 0.84762 0.85845 1.44297 1.82656 1.07006 1.05587 1.17359 1.03122 0.83700 0.93441 1.20226 1.06126 0.95771 0.93963 1.20995 1.07392 0.92865 0.99711 1.19250 0.96013 0.85582 0.92929 1.83988 1.76244 1.18727 1.30262 1.21234 1.45986 0.96865 0.82321 0.89446 1.25218 0.96897 0.94881 0.99681 1.70043 1.44486 1.03717 1.32216 0.85763 0.78933 0.78203 0.80809 1.20058 1.20384 1.19356 1.20020 1.07312 0.95104 0.94604 1.20155 1.07239 0.92563 0.96761 1.42670 1.05839 1.08549 1.45046 1.21501 0.80999 1.00631 1.03247 0.90588 0.90934 0.90689 0.84001 0.83125 0.80024 0.90199 0.92468 0.77549 0.87702 0.85472 0.92270 0.86459 0.87164 0.81975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.00 36.01 0.36 -0.13 16 2 C -0.11 -0.81 5.85 -104.95 -0.61 -1.42 16 3 C -0.10 -0.64 9.74 -39.54 -0.38 -1.03 16 4 C -0.08 -0.69 10.11 -39.36 -0.40 -1.09 16 5 C 0.22 2.59 7.81 -156.05 -1.22 1.37 16 6 N -0.49 -6.51 11.32 -12.78 -0.14 -6.65 16 7 C 0.05 0.63 11.75 -17.93 -0.21 0.42 16 8 C -0.08 -0.90 6.40 -81.48 -0.52 -1.42 16 9 C 0.22 2.41 5.34 -5.19 -0.03 2.38 16 10 N -0.76 -10.00 5.73 -59.76 -0.34 -10.34 16 11 C 0.12 2.02 6.66 -83.71 -0.56 1.47 16 12 C -0.14 -2.53 9.89 -39.40 -0.39 -2.92 16 13 C -0.19 -4.11 9.16 -39.42 -0.36 -4.47 16 14 C 0.11 2.77 6.65 -39.09 -0.26 2.51 16 15 O -0.19 -5.39 9.76 -0.05 0.00 -5.39 16 16 C -0.39 -10.94 9.48 30.88 0.29 -10.65 16 17 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 18 C 0.04 1.01 5.49 -17.52 -0.10 0.92 16 19 N -0.87 -25.84 13.67 55.48 0.76 -25.08 16 20 Si 0.94 20.83 29.55 -169.99 -5.02 15.80 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 C -0.15 -3.14 9.98 -39.42 -0.39 -3.54 16 25 C -0.15 -2.52 9.30 -39.40 -0.37 -2.89 16 26 N -0.35 -3.86 2.95 -58.46 -0.17 -4.04 16 27 C 0.06 0.53 10.46 -16.65 -0.17 0.36 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 30 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 31 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 32 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 35 H 0.06 0.62 7.95 -51.93 -0.41 0.21 16 36 H 0.39 4.97 8.48 -40.82 -0.35 4.63 16 37 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.13 2.78 5.63 -52.49 -0.30 2.48 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 41 H 0.11 1.60 6.73 -52.49 -0.35 1.25 16 42 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -33.47 361.24 -9.83 -43.30 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.03 Total: 7.09 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -5.32 Total: -20.13 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.10 Total: -46.11 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: 0.00 Total: -5.39 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.47 -9.83 -43.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116326777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.687 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds