Wall clock time and date at job start Tue Mar 31 2020 14:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40471 * 119.85160 * 2 1 4 4 C 1.36026 * 119.69297 * 179.97438 * 3 2 1 5 5 C 1.40935 * 119.32979 * 359.97438 * 4 3 2 6 6 N 1.32551 * 132.32691 * 179.97438 * 5 4 3 7 7 C 1.33520 * 109.15975 * 180.02562 * 6 5 4 8 8 C 1.35108 * 108.62181 * 359.97438 * 7 6 5 9 9 C 1.50699 * 126.40507 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.47179 * 95.02667 * 9 8 7 11 11 C 1.39779 * 119.99819 * 179.97438 * 10 9 8 12 12 C 1.38949 * 120.00373 * 180.02562 * 11 10 9 13 13 C 1.38007 * 119.99518 * 179.97438 * 12 11 10 14 14 C 1.38902 * 120.00593 * 0.02562 * 13 12 11 15 15 O 1.35796 * 119.99558 * 179.97438 * 14 13 12 16 16 C 1.34814 * 116.99905 * 5.54231 * 15 14 13 17 17 H 1.08001 * 119.99962 * 354.94516 * 16 15 14 18 18 C 1.38627 * 119.99781 * 174.94495 * 16 15 14 19 19 N 1.31573 * 120.00047 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99754 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47347 * 89.99716 * 20 18 16 22 22 H 1.48501 * 109.46925 * 209.99664 * 20 18 16 23 23 H 1.48504 * 109.47077 * 329.99706 * 20 18 16 24 24 C 1.38899 * 120.00959 * 0.23780 * 14 13 12 25 25 C 1.38012 * 120.00613 * 359.48059 * 24 14 13 26 26 N 1.36830 * 107.17910 * 0.24470 * 8 7 6 27 27 C 1.34950 * 119.85074 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46992 * 89.99978 * 1 2 3 29 29 H 1.08993 * 109.47221 * 209.99952 * 1 2 3 30 30 H 1.09002 * 109.46944 * 330.00543 * 1 2 3 31 31 H 1.07996 * 120.15637 * 359.95900 * 3 2 1 32 32 H 1.08002 * 120.33346 * 179.97438 * 4 3 2 33 33 H 1.07997 * 125.69079 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47519 * 335.02463 * 9 8 7 35 35 H 1.09000 * 109.47011 * 215.02849 * 9 8 7 36 36 H 0.96996 * 119.99685 * 0.02562 * 10 9 8 37 37 H 1.07999 * 120.00601 * 359.95851 * 12 11 10 38 38 H 1.08001 * 119.99981 * 180.02562 * 13 12 11 39 39 H 0.97001 * 120.00236 * 180.02562 * 19 18 16 40 40 H 1.08002 * 119.99383 * 179.74343 * 24 14 13 41 41 H 1.08001 * 120.00015 * 180.22690 * 25 24 14 42 42 H 1.08003 * 119.69500 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2183 0.0000 4 6 3.5665 1.2146 0.0005 5 6 4.2534 -0.0160 0.0016 6 7 5.5441 -0.3177 0.0019 7 6 5.6838 -1.6456 0.0025 8 6 4.4556 -2.2086 0.0032 9 6 4.1479 -3.6838 0.0035 10 7 3.9305 -4.1371 1.3796 11 6 3.6277 -5.4777 1.6342 12 6 3.4209 -5.9076 2.9393 13 6 3.1214 -7.2312 3.1904 14 6 3.0271 -8.1337 2.1388 15 8 2.7329 -9.4361 2.3862 16 6 2.4313 -9.7644 3.6585 17 1 2.5105 -9.0238 4.4405 18 6 2.0196 -11.0526 3.9628 19 7 1.9227 -11.9547 3.0100 20 14 1.6010 -11.5073 5.7256 21 1 0.1589 -11.2542 5.9730 22 1 1.8967 -12.9453 5.9494 23 1 2.4148 -10.6840 6.6558 24 6 3.2392 -7.7053 0.8346 25 6 3.5330 -6.3806 0.5824 26 7 3.5435 -1.1886 -0.0026 27 6 2.1787 -1.1705 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6663 2.1537 -0.0007 32 1 4.1145 2.1452 0.0001 33 1 6.6220 -2.1805 0.0032 34 1 4.9854 -4.2298 -0.4308 35 1 3.2497 -3.8678 -0.5859 36 1 3.9960 -3.5067 2.1139 37 1 3.4948 -5.2061 3.7571 38 1 2.9602 -7.5653 4.2047 39 1 1.6342 -12.8561 3.2229 40 1 3.1699 -8.4081 0.0175 41 1 3.6942 -6.0469 -0.4320 42 1 1.6313 -2.1015 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116326777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:53 Heat of formation + Delta-G solvation = 73.785775 kcal Electronic energy + Delta-G solvation = -25151.745481 eV Core-core repulsion = 21484.026399 eV Total energy + Delta-G solvation = -3667.719083 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.88158 -40.71179 -38.95845 -38.62622 -36.11181 -34.58069 -34.06679 -33.04749 -31.88446 -31.07030 -28.73179 -27.65293 -27.40329 -26.15629 -24.18251 -23.55374 -23.10441 -22.38847 -21.79066 -19.71075 -18.88507 -18.64537 -17.73766 -17.65978 -17.11050 -16.53807 -16.22096 -16.12883 -15.81448 -15.47597 -15.39300 -15.19402 -14.75337 -14.63336 -14.44927 -14.31217 -14.07405 -13.91940 -13.43592 -13.23424 -13.19289 -13.01913 -12.97591 -12.61140 -12.44415 -12.42629 -12.26652 -12.10078 -11.83405 -11.20808 -11.10245 -10.92301 -10.22312 -9.77885 -9.69865 -8.84676 -8.39283 -7.97823 -6.02919 -0.21232 0.17072 0.58421 0.92079 1.36837 1.46377 1.53437 1.53886 1.69205 2.22622 2.50016 2.75549 2.91231 3.21545 3.25316 3.46513 3.59577 3.68265 3.87244 3.96669 4.00439 4.12269 4.17501 4.27090 4.46453 4.52264 4.56824 4.60617 4.68318 4.75749 4.83599 4.94367 4.99126 5.09078 5.12303 5.22642 5.26689 5.30944 5.44823 5.53610 5.57055 5.57674 5.78330 5.95855 6.03176 6.11511 6.54290 6.78138 6.89635 7.06605 7.93285 8.85110 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022020 B = 0.002217 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.243051 B =12625.236850 C =13164.679533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.102 4.102 3 C -0.080 4.080 4 C -0.098 4.098 5 C 0.204 3.796 6 N -0.532 5.532 7 C 0.044 3.956 8 C -0.091 4.091 9 C 0.218 3.782 10 N -0.744 5.744 11 C 0.154 3.846 12 C -0.144 4.144 13 C -0.193 4.193 14 C 0.064 3.936 15 O -0.241 6.241 16 C -0.405 4.405 17 H 0.098 0.902 18 C -0.028 4.028 19 N -0.926 5.926 20 Si 1.016 2.984 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.255 1.255 24 C -0.154 4.154 25 C -0.141 4.141 26 N -0.352 5.352 27 C 0.032 3.968 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.167 0.833 33 H 0.196 0.804 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.397 0.603 37 H 0.133 0.867 38 H 0.117 0.883 39 H 0.270 0.730 40 H 0.115 0.885 41 H 0.147 0.853 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.593 28.622 -6.326 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.105 4.105 3 C -0.104 4.104 4 C -0.118 4.118 5 C -0.039 4.039 6 N -0.252 5.252 7 C -0.109 4.109 8 C -0.204 4.204 9 C 0.094 3.906 10 N -0.379 5.379 11 C 0.053 3.947 12 C -0.166 4.166 13 C -0.213 4.213 14 C 0.014 3.986 15 O -0.149 6.149 16 C -0.482 4.482 17 H 0.115 0.885 18 C -0.224 4.224 19 N -0.566 5.566 20 Si 0.836 3.164 21 H -0.189 1.189 22 H -0.198 1.198 23 H -0.178 1.178 24 C -0.174 4.174 25 C -0.163 4.163 26 N -0.023 5.023 27 C -0.090 4.090 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.196 0.804 32 H 0.184 0.816 33 H 0.213 0.787 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.232 0.768 37 H 0.151 0.849 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.133 0.867 41 H 0.164 0.836 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.976 28.719 -6.720 29.511 hybrid contribution -0.506 -1.196 0.970 1.621 sum -1.482 27.523 -5.750 28.156 Atomic orbital electron populations 1.20788 0.86847 1.04573 1.03971 1.19937 0.98779 0.91183 1.00558 1.21454 0.92762 0.99443 0.96747 1.20610 0.94588 0.94351 1.02290 1.21491 0.87816 0.88415 1.06171 1.70753 1.14478 1.15336 1.24630 1.22717 0.97711 0.89640 1.00804 1.21172 0.88763 0.90639 1.19849 1.19407 1.01877 0.84996 0.84344 1.44386 1.80960 1.05461 1.07136 1.17441 0.99505 0.85033 0.92681 1.20447 1.05722 0.94751 0.95690 1.21028 1.07501 0.94071 0.98706 1.19757 0.98891 0.84963 0.94951 1.83936 1.79022 1.21409 1.30574 1.21736 1.45963 0.97600 0.82910 0.88503 1.26509 0.96647 0.94482 1.04808 1.70196 1.47048 1.04300 1.35013 0.84624 0.79123 0.78043 0.74655 1.18934 1.19775 1.17824 1.20248 1.06944 0.96718 0.93458 1.20435 1.06064 0.90997 0.98779 1.42761 1.06474 1.08253 1.44786 1.21851 0.80378 1.01851 1.04936 0.89443 0.90966 0.88907 0.80423 0.81599 0.78691 0.88961 0.91528 0.76814 0.84877 0.86475 0.92146 0.86695 0.83572 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.00 71.24 0.71 0.13 16 2 C -0.10 -1.14 5.85 -20.08 -0.12 -1.25 16 3 C -0.08 -0.79 9.74 22.30 0.22 -0.57 16 4 C -0.10 -1.47 10.11 22.42 0.23 -1.24 16 5 C 0.20 4.51 7.81 134.11 1.05 5.55 16 6 N -0.53 -13.60 11.32 -194.35 -2.20 -15.80 16 7 C 0.04 0.98 11.75 83.72 0.98 1.97 16 8 C -0.09 -1.89 6.40 41.06 0.26 -1.62 16 9 C 0.22 4.20 5.34 85.63 0.46 4.66 16 10 N -0.74 -17.19 5.73 -342.97 -1.96 -19.15 16 11 C 0.15 4.71 6.66 38.21 0.25 4.97 16 12 C -0.14 -4.98 9.89 22.39 0.22 -4.76 16 13 C -0.19 -8.48 9.16 22.37 0.20 -8.28 16 14 C 0.06 3.21 6.65 22.59 0.15 3.36 16 15 O -0.24 -14.76 9.76 -23.09 -0.23 -14.99 16 16 C -0.41 -24.04 9.48 67.91 0.64 -23.39 16 17 H 0.10 5.28 5.20 -2.91 -0.02 5.26 16 18 C -0.03 -1.64 5.49 84.82 0.47 -1.17 16 19 N -0.93 -57.94 13.67 21.61 0.30 -57.64 16 20 Si 1.02 43.77 29.55 68.60 2.03 45.80 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 24 C -0.15 -6.49 9.98 22.37 0.22 -6.27 16 25 C -0.14 -4.59 9.30 22.39 0.21 -4.38 16 26 N -0.35 -7.12 2.95 -338.88 -1.00 -8.12 16 27 C 0.03 0.50 10.46 83.21 0.87 1.37 16 28 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.45 8.07 -2.39 -0.02 0.43 16 30 H 0.09 0.23 8.09 -2.39 -0.02 0.21 16 31 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 32 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.20 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.09 1.63 7.95 -2.39 -0.02 1.61 16 35 H 0.07 1.22 7.95 -2.39 -0.02 1.20 16 36 H 0.40 8.79 8.48 -92.71 -0.79 8.00 16 37 H 0.13 3.84 8.06 -2.91 -0.02 3.81 16 38 H 0.12 5.26 5.63 -2.91 -0.02 5.25 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 41 H 0.15 3.71 6.73 -2.91 -0.02 3.69 16 42 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -78.17 361.24 4.24 -73.93 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.28 Total: 26.92 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 7.03 Total: -30.95 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -4.87 Total: -100.71 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.23 Total: -14.99 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -78.17 4.24 -73.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116326777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.713 kcal (2) G-P(sol) polarization free energy of solvation -78.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds