Wall clock time and date at job start Tue Mar 31 2020 14:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 F 1.39905 * 110.88513 * 151.88397 * 3 2 1 5 5 C 1.55153 * 111.00615 * 28.00801 * 3 2 1 6 6 C 1.54325 * 102.94163 * 206.42343 * 5 3 2 7 7 N 1.47018 * 107.27432 * 22.18817 * 6 5 3 8 8 C 1.34780 * 125.65347 * 181.02498 * 7 6 5 9 9 O 1.21350 * 119.99981 * 180.02562 * 8 7 6 10 10 C 1.49443 * 119.99494 * 0.02562 * 8 7 6 11 11 O 1.21342 * 120.00649 * 353.51766 * 10 8 7 12 12 N 1.34778 * 119.99698 * 173.51512 * 10 8 7 13 13 C 1.46931 * 120.63313 * 352.98604 * 12 10 8 14 14 C 1.53187 * 108.77553 * 126.41389 * 13 12 10 15 15 C 1.53036 * 109.33906 * 54.62151 * 14 13 12 16 16 C 1.53038 * 109.53975 * 298.68021 * 15 14 13 17 17 H 1.08997 * 109.49965 * 301.34876 * 16 15 14 18 18 C 1.50700 * 109.49432 * 181.28282 * 16 15 14 19 19 H 1.07993 * 120.00323 * 0.13305 * 18 16 15 20 20 C 1.37879 * 119.99669 * 180.13225 * 18 16 15 21 21 N 1.31514 * 119.99949 * 180.02562 * 20 18 16 22 22 Si 1.86803 * 120.00206 * 359.97438 * 20 18 16 23 23 H 1.48500 * 109.46656 * 90.00025 * 22 20 18 24 24 H 1.48493 * 109.47413 * 210.00219 * 22 20 18 25 25 H 1.48500 * 109.47009 * 330.00336 * 22 20 18 26 26 C 1.46929 * 120.63174 * 173.01199 * 12 10 8 27 27 C 1.47432 * 108.70002 * 1.29197 * 7 6 5 28 28 H 1.09002 * 110.72637 * 88.06151 * 5 3 2 29 29 H 1.09005 * 110.72082 * 324.78171 * 5 3 2 30 30 H 1.09008 * 109.87938 * 262.77335 * 6 5 3 31 31 H 1.08996 * 110.01456 * 141.68561 * 6 5 3 32 32 H 1.08999 * 109.58409 * 6.62627 * 13 12 10 33 33 H 1.08994 * 109.70701 * 246.27310 * 13 12 10 34 34 H 1.09006 * 109.49738 * 174.59231 * 14 13 12 35 35 H 1.08999 * 109.49892 * 294.65233 * 14 13 12 36 36 H 1.09001 * 109.46163 * 58.67163 * 15 14 13 37 37 H 1.09005 * 109.45764 * 178.62840 * 15 14 13 38 38 H 0.97001 * 120.00018 * 179.97438 * 21 20 18 39 39 H 1.08997 * 109.58292 * 353.36942 * 26 12 10 40 40 H 1.08998 * 109.59083 * 113.65565 * 26 12 10 41 41 H 1.08998 * 110.36931 * 94.48175 * 27 7 6 42 42 H 1.09001 * 110.36408 * 216.80857 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 9 3.1062 1.1538 -0.6160 5 6 3.1647 -1.2779 -0.6802 6 6 4.5461 -1.4501 -0.0140 7 7 4.5056 -0.7308 1.2675 8 6 5.5260 -0.6248 2.1416 9 8 5.3788 -0.0040 3.1738 10 6 6.8388 -1.2719 1.8394 11 8 6.9522 -1.9894 0.8674 12 7 7.8969 -1.0584 2.6465 13 6 7.8210 -0.0757 3.7362 14 6 8.2235 -0.7602 5.0462 15 6 9.6002 -1.4070 4.8780 16 6 9.5358 -2.4686 3.7776 17 1 8.7904 -3.2195 4.0395 18 6 10.8839 -3.1268 3.6344 19 1 11.7043 -2.8206 4.2665 20 6 11.0699 -4.1201 2.6964 21 7 12.2462 -4.6949 2.5717 22 14 9.6508 -4.6504 1.6036 23 1 9.6439 -3.8277 0.3673 24 1 9.8108 -6.0824 1.2444 25 1 8.3694 -4.4626 2.3303 26 6 9.1483 -1.8035 2.4531 27 6 3.1616 -0.1501 1.4413 28 1 3.2708 -1.1282 -1.7547 29 1 2.5258 -2.1358 -0.4704 30 1 5.3211 -1.0262 -0.6527 31 1 4.7470 -2.5072 0.1603 32 1 6.8013 0.3004 3.8186 33 1 8.5004 0.7519 3.5327 34 1 8.2643 -0.0203 5.8457 35 1 7.4897 -1.5263 5.2968 36 1 10.3288 -0.6441 4.6038 37 1 9.8992 -1.8738 5.8166 38 1 12.3770 -5.3939 1.9121 39 1 9.0043 -2.5674 1.6890 40 1 9.9369 -1.1188 2.1412 41 1 2.5308 -0.8211 2.0242 42 1 3.2292 0.8244 1.9250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118521713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:42 Heat of formation + Delta-G solvation = -47.908812 kcal Electronic energy + Delta-G solvation = -28054.040026 eV Core-core repulsion = 23950.274645 eV Total energy + Delta-G solvation = -4103.765381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.61966 -41.02901 -39.17673 -37.99006 -37.26710 -36.70062 -33.41877 -32.21422 -31.92042 -30.57550 -29.95218 -26.77948 -25.22456 -24.82315 -22.94032 -22.18473 -21.97878 -20.00347 -19.34206 -18.86174 -17.66241 -17.01446 -16.78371 -16.43425 -16.17641 -15.95116 -15.83145 -15.05469 -14.62648 -14.37968 -14.21953 -14.10288 -13.94608 -13.80351 -13.53211 -13.50782 -13.26267 -13.18139 -13.03522 -12.79829 -12.52153 -12.21555 -12.13438 -11.98762 -11.72801 -11.60454 -11.12547 -10.92587 -10.55091 -10.35488 -10.13882 -9.81539 -9.52730 -9.26279 -9.18565 -8.80597 -8.66540 -8.22244 -6.15633 -4.17054 1.38944 1.75265 1.86331 2.02987 2.75408 3.22531 3.27311 3.30197 3.37143 3.38488 3.44675 3.58751 4.01690 4.22016 4.35284 4.35926 4.59251 4.93460 5.03203 5.08602 5.15939 5.29324 5.44092 5.47283 5.48005 5.63756 5.70517 5.94121 6.07591 6.10481 6.22779 6.41140 6.44133 6.54247 6.62268 6.68750 6.76374 6.81771 7.09503 7.37208 7.47677 7.64376 7.68911 8.11754 8.44129 8.88363 9.45269 10.96535 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.003581 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.618379 B = 7818.073213 C = 8793.493380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C 0.192 3.808 3 C 0.211 3.789 4 F -0.163 7.163 5 C -0.144 4.144 6 C 0.105 3.895 7 N -0.595 5.595 8 C 0.534 3.466 9 O -0.503 6.503 10 C 0.500 3.500 11 O -0.526 6.526 12 N -0.566 5.566 13 C 0.051 3.949 14 C -0.130 4.130 15 C -0.103 4.103 16 C 0.006 3.994 17 H 0.031 0.969 18 C -0.515 4.515 19 H 0.079 0.921 20 C 0.072 3.928 21 N -0.894 5.894 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.294 1.294 25 H -0.266 1.266 26 C 0.100 3.900 27 C 0.098 3.902 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.145 0.855 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.266 0.734 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.265 9.706 -4.419 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.051 5.051 2 C -0.129 4.129 3 C 0.189 3.811 4 F -0.143 7.143 5 C -0.183 4.183 6 C -0.017 4.017 7 N -0.330 5.330 8 C 0.320 3.680 9 O -0.379 6.379 10 C 0.281 3.719 11 O -0.404 6.404 12 N -0.298 5.298 13 C -0.070 4.070 14 C -0.169 4.169 15 C -0.141 4.141 16 C -0.014 4.014 17 H 0.049 0.951 18 C -0.553 4.553 19 H 0.097 0.903 20 C -0.131 4.131 21 N -0.532 5.532 22 Si 0.708 3.292 23 H -0.197 1.197 24 H -0.222 1.222 25 H -0.191 1.191 26 C -0.020 4.020 27 C -0.026 4.026 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.162 0.838 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.755 9.559 -4.431 22.389 hybrid contribution -0.109 -0.263 -0.796 0.845 sum -19.864 9.296 -5.227 22.546 Atomic orbital electron populations 1.81266 1.12025 1.05571 1.06209 1.28622 0.94253 0.95151 0.94905 1.18837 0.80982 0.85620 0.95692 1.93034 1.87342 1.50143 1.83813 1.23482 0.97155 0.95004 1.02641 1.22325 0.96246 0.99584 0.83561 1.48148 1.10883 1.52839 1.21160 1.20368 0.84660 0.80347 0.82671 1.90354 1.81109 1.41816 1.24641 1.19626 0.84663 0.83349 0.84283 1.90734 1.83679 1.38836 1.27146 1.48374 1.12646 1.38840 1.29916 1.23141 1.07574 0.90363 0.85967 1.21901 0.98890 0.99900 0.96173 1.21486 0.94635 0.98282 0.99710 1.19496 0.98045 0.93804 0.90053 0.95104 1.20965 0.95156 1.18718 1.20479 0.90324 1.25066 0.95436 0.95705 0.96873 1.69887 1.22386 1.25786 1.35109 0.86991 0.83203 0.77316 0.81669 1.19704 1.22152 1.19063 1.22854 0.81887 0.95365 1.01927 1.22783 0.84254 1.02693 0.92899 0.86832 0.87476 0.88847 0.88301 0.83844 0.91909 0.91584 0.92181 0.92500 0.92212 0.92449 0.90304 0.90766 0.87907 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -3.75 18.54 42.15 0.78 -2.97 16 2 C 0.19 1.46 14.47 -20.76 -0.30 1.16 16 3 C 0.21 1.38 1.55 -91.14 -0.14 1.24 16 4 F -0.16 -1.33 16.99 2.25 0.04 -1.29 16 5 C -0.14 -0.74 6.20 -24.90 -0.15 -0.90 16 6 C 0.10 0.91 5.50 -3.07 -0.02 0.89 16 7 N -0.60 -6.23 3.33 -170.89 -0.57 -6.80 16 8 C 0.53 7.44 7.81 -11.59 -0.09 7.35 16 9 O -0.50 -7.32 13.36 5.50 0.07 -7.24 16 10 C 0.50 8.63 7.70 -11.59 -0.09 8.54 16 11 O -0.53 -9.97 13.62 5.50 0.07 -9.89 16 12 N -0.57 -10.36 2.97 -173.28 -0.52 -10.87 16 13 C 0.05 0.78 6.27 -3.71 -0.02 0.76 16 14 C -0.13 -2.04 6.08 -26.62 -0.16 -2.20 16 15 C -0.10 -1.95 5.11 -26.69 -0.14 -2.08 16 16 C 0.01 0.13 1.84 -91.65 -0.17 -0.04 16 17 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 18 C -0.52 -13.93 9.15 -34.44 -0.31 -14.25 16 19 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 20 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 21 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 22 Si 0.88 22.03 24.32 -169.99 -4.13 17.89 16 23 H -0.27 -6.74 6.92 56.52 0.39 -6.35 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 26 C 0.10 2.14 5.09 -3.71 -0.02 2.12 16 27 C 0.10 0.72 6.17 -2.41 -0.01 0.71 16 28 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.11 0.38 8.02 -51.93 -0.42 -0.03 16 30 H 0.09 0.88 7.74 -51.92 -0.40 0.48 16 31 H 0.10 0.94 7.55 -51.93 -0.39 0.55 16 32 H 0.15 2.13 3.78 -56.76 -0.21 1.91 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.08 1.86 2.37 -51.93 -0.12 1.74 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.10 0.60 8.02 -51.93 -0.42 0.18 16 42 H 0.11 0.80 8.03 -51.93 -0.42 0.39 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -32.40 342.02 -5.36 -37.77 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.31 Total: -1.00 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.73 Total: 5.24 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.47 Total: -46.62 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.15 Total: -17.14 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.13 Total: 17.89 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.40 -5.36 -37.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118521713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.142 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds