Wall clock time and date at job start Tue Mar 31 2020 14:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 F 1.39905 * 110.88513 * 151.88397 * 3 2 1 5 5 C 1.55153 * 111.00615 * 28.00801 * 3 2 1 6 6 C 1.54325 * 102.94163 * 206.42343 * 5 3 2 7 7 N 1.47018 * 107.27432 * 22.18817 * 6 5 3 8 8 C 1.34780 * 125.65347 * 181.02498 * 7 6 5 9 9 O 1.21350 * 119.99981 * 180.02562 * 8 7 6 10 10 C 1.49443 * 119.99494 * 0.02562 * 8 7 6 11 11 O 1.21342 * 120.00649 * 353.51766 * 10 8 7 12 12 N 1.34778 * 119.99698 * 173.51512 * 10 8 7 13 13 C 1.46931 * 120.63313 * 352.98604 * 12 10 8 14 14 C 1.53187 * 108.77553 * 126.41389 * 13 12 10 15 15 C 1.53036 * 109.33906 * 54.62151 * 14 13 12 16 16 C 1.53038 * 109.53975 * 298.68021 * 15 14 13 17 17 H 1.08997 * 109.49965 * 301.34876 * 16 15 14 18 18 C 1.50700 * 109.49432 * 181.28282 * 16 15 14 19 19 H 1.07993 * 120.00323 * 0.13305 * 18 16 15 20 20 C 1.37879 * 119.99669 * 180.13225 * 18 16 15 21 21 N 1.31514 * 119.99949 * 180.02562 * 20 18 16 22 22 Si 1.86803 * 120.00206 * 359.97438 * 20 18 16 23 23 H 1.48500 * 109.46656 * 90.00025 * 22 20 18 24 24 H 1.48493 * 109.47413 * 210.00219 * 22 20 18 25 25 H 1.48500 * 109.47009 * 330.00336 * 22 20 18 26 26 C 1.46929 * 120.63174 * 173.01199 * 12 10 8 27 27 C 1.47432 * 108.70002 * 1.29197 * 7 6 5 28 28 H 1.09002 * 110.72637 * 88.06151 * 5 3 2 29 29 H 1.09005 * 110.72082 * 324.78171 * 5 3 2 30 30 H 1.09008 * 109.87938 * 262.77335 * 6 5 3 31 31 H 1.08996 * 110.01456 * 141.68561 * 6 5 3 32 32 H 1.08999 * 109.58409 * 6.62627 * 13 12 10 33 33 H 1.08994 * 109.70701 * 246.27310 * 13 12 10 34 34 H 1.09006 * 109.49738 * 174.59231 * 14 13 12 35 35 H 1.08999 * 109.49892 * 294.65233 * 14 13 12 36 36 H 1.09001 * 109.46163 * 58.67163 * 15 14 13 37 37 H 1.09005 * 109.45764 * 178.62840 * 15 14 13 38 38 H 0.97001 * 120.00018 * 179.97438 * 21 20 18 39 39 H 1.08997 * 109.58292 * 353.36942 * 26 12 10 40 40 H 1.08998 * 109.59083 * 113.65565 * 26 12 10 41 41 H 1.08998 * 110.36931 * 94.48175 * 27 7 6 42 42 H 1.09001 * 110.36408 * 216.80857 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 9 3.1062 1.1538 -0.6160 5 6 3.1647 -1.2779 -0.6802 6 6 4.5461 -1.4501 -0.0140 7 7 4.5056 -0.7308 1.2675 8 6 5.5260 -0.6248 2.1416 9 8 5.3788 -0.0040 3.1738 10 6 6.8388 -1.2719 1.8394 11 8 6.9522 -1.9894 0.8674 12 7 7.8969 -1.0584 2.6465 13 6 7.8210 -0.0757 3.7362 14 6 8.2235 -0.7602 5.0462 15 6 9.6002 -1.4070 4.8780 16 6 9.5358 -2.4686 3.7776 17 1 8.7904 -3.2195 4.0395 18 6 10.8839 -3.1268 3.6344 19 1 11.7043 -2.8206 4.2665 20 6 11.0699 -4.1201 2.6964 21 7 12.2462 -4.6949 2.5717 22 14 9.6508 -4.6504 1.6036 23 1 9.6439 -3.8277 0.3673 24 1 9.8108 -6.0824 1.2444 25 1 8.3694 -4.4626 2.3303 26 6 9.1483 -1.8035 2.4531 27 6 3.1616 -0.1501 1.4413 28 1 3.2708 -1.1282 -1.7547 29 1 2.5258 -2.1358 -0.4704 30 1 5.3211 -1.0262 -0.6527 31 1 4.7470 -2.5072 0.1603 32 1 6.8013 0.3004 3.8186 33 1 8.5004 0.7519 3.5327 34 1 8.2643 -0.0203 5.8457 35 1 7.4897 -1.5263 5.2968 36 1 10.3288 -0.6441 4.6038 37 1 9.8992 -1.8738 5.8166 38 1 12.3770 -5.3939 1.9121 39 1 9.0043 -2.5674 1.6890 40 1 9.9369 -1.1188 2.1412 41 1 2.5308 -0.8211 2.0242 42 1 3.2292 0.8244 1.9250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118521713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:41 Heat of formation + Delta-G solvation = -70.025936 kcal Electronic energy + Delta-G solvation = -28054.999096 eV Core-core repulsion = 23950.274645 eV Total energy + Delta-G solvation = -4104.724451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.21409 -42.17128 -40.28062 -38.96072 -38.57292 -37.52859 -35.25460 -33.66514 -32.88665 -32.25323 -30.58295 -28.01589 -27.00866 -25.93791 -23.67143 -23.45032 -23.34774 -21.21862 -20.41121 -19.83813 -18.98675 -18.51541 -18.25912 -17.34948 -17.11433 -17.10170 -16.49292 -16.31256 -16.01534 -15.77217 -15.40173 -15.19835 -14.93757 -14.84120 -14.66259 -14.60130 -14.41050 -14.19976 -14.11840 -13.81661 -13.74598 -13.60373 -13.26287 -12.99839 -12.75533 -12.52822 -12.46968 -12.30189 -12.15891 -12.09205 -11.61422 -11.59369 -11.28593 -11.06370 -10.78637 -10.19173 -10.00740 -9.68931 -8.36122 -6.39743 0.21554 0.91700 1.25668 1.27922 1.28093 1.33548 1.40654 1.96108 2.05843 2.24215 2.33639 2.79252 2.85432 2.99976 3.14043 3.49562 3.78560 3.98483 4.08765 4.15259 4.18974 4.38163 4.41494 4.46674 4.51476 4.55095 4.61090 4.75455 4.78350 4.87712 4.92711 4.97377 5.08718 5.14365 5.22759 5.34251 5.50179 5.60534 5.66126 5.80506 6.03485 6.22056 6.26455 6.50515 6.68932 6.81797 7.25748 8.79951 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.003581 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.618379 B = 7818.073213 C = 8793.493380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.220 3.780 3 C 0.220 3.780 4 F -0.171 7.171 5 C -0.130 4.130 6 C 0.098 3.902 7 N -0.587 5.587 8 C 0.540 3.460 9 O -0.511 6.511 10 C 0.493 3.507 11 O -0.547 6.547 12 N -0.576 5.576 13 C 0.050 3.950 14 C -0.122 4.122 15 C -0.100 4.100 16 C 0.005 3.995 17 H 0.018 0.982 18 C -0.514 4.514 19 H 0.048 0.952 20 C 0.024 3.976 21 N -0.939 5.939 22 Si 0.938 3.062 23 H -0.269 1.269 24 H -0.293 1.293 25 H -0.263 1.263 26 C 0.108 3.892 27 C 0.095 3.905 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.159 0.841 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.268 0.732 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.126 0.874 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.111 10.939 -4.750 24.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.101 4.101 3 C 0.197 3.803 4 F -0.151 7.151 5 C -0.168 4.168 6 C -0.024 4.024 7 N -0.321 5.321 8 C 0.324 3.676 9 O -0.389 6.389 10 C 0.275 3.725 11 O -0.426 6.426 12 N -0.307 5.307 13 C -0.069 4.069 14 C -0.160 4.160 15 C -0.138 4.138 16 C -0.014 4.014 17 H 0.036 0.964 18 C -0.552 4.552 19 H 0.066 0.934 20 C -0.175 4.175 21 N -0.579 5.579 22 Si 0.767 3.233 23 H -0.196 1.196 24 H -0.220 1.220 25 H -0.188 1.188 26 C -0.014 4.014 27 C -0.028 4.028 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.175 0.825 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.143 0.857 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -22.651 10.814 -4.770 25.549 hybrid contribution 0.795 -0.609 -0.682 1.212 sum -21.855 10.205 -5.452 24.729 Atomic orbital electron populations 1.81315 1.13177 1.06917 1.07508 1.28564 0.94001 0.93865 0.93655 1.18804 0.80198 0.85874 0.95396 1.93032 1.87354 1.50800 1.83930 1.23517 0.95026 0.94950 1.03332 1.22453 0.98290 0.98841 0.82796 1.48106 1.11166 1.51940 1.20859 1.19507 0.84117 0.80678 0.83317 1.90326 1.81047 1.42434 1.25057 1.20258 0.85686 0.82955 0.83582 1.90714 1.84316 1.39657 1.27956 1.48356 1.11919 1.39265 1.31187 1.23367 1.08858 0.89909 0.84790 1.21854 0.96169 1.00413 0.97518 1.21425 0.97132 0.97316 0.97928 1.19413 0.94952 0.94618 0.92433 0.96434 1.21268 0.96367 1.18508 1.19091 0.93417 1.25737 0.97311 0.96090 0.98363 1.70002 1.24325 1.27035 1.36513 0.86024 0.80536 0.76714 0.80048 1.19552 1.22016 1.18808 1.22328 0.83802 0.95189 1.00052 1.23034 0.82664 1.03384 0.93743 0.84794 0.85170 0.89783 0.89037 0.82494 0.90532 0.88122 0.92659 0.92289 0.92572 0.92306 0.92409 0.91042 0.85655 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.33 18.54 20.01 0.37 -6.95 16 2 C 0.22 2.70 14.47 89.44 1.29 3.99 16 3 C 0.22 2.15 1.55 -11.13 -0.02 2.13 16 4 F -0.17 -2.30 16.99 44.97 0.76 -1.53 16 5 C -0.13 -0.87 6.20 31.78 0.20 -0.68 16 6 C 0.10 1.46 5.50 86.73 0.48 1.93 16 7 N -0.59 -10.73 3.33 -812.92 -2.70 -13.44 16 8 C 0.54 13.82 7.81 87.27 0.68 14.50 16 9 O -0.51 -13.43 13.36 -3.25 -0.04 -13.48 16 10 C 0.49 16.34 7.70 87.27 0.67 17.01 16 11 O -0.55 -20.25 13.62 -3.22 -0.04 -20.29 16 12 N -0.58 -20.31 2.97 -820.50 -2.44 -22.75 16 13 C 0.05 1.43 6.27 86.36 0.54 1.97 16 14 C -0.12 -3.49 6.08 30.67 0.19 -3.31 16 15 C -0.10 -3.69 5.11 30.62 0.16 -3.53 16 16 C 0.01 0.25 1.84 -11.46 -0.02 0.22 16 17 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 18 C -0.51 -28.57 9.15 25.60 0.23 -28.34 16 19 H 0.05 2.88 7.99 -2.91 -0.02 2.86 16 20 C 0.02 1.36 5.45 84.66 0.46 1.82 16 21 N -0.94 -57.86 13.96 21.45 0.30 -57.56 16 22 Si 0.94 46.67 24.32 68.60 1.67 48.33 16 23 H -0.27 -13.20 6.92 99.48 0.69 -12.51 16 24 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.26 -12.81 6.53 99.48 0.65 -12.16 16 26 C 0.11 4.62 5.09 86.36 0.44 5.06 16 27 C 0.09 1.08 6.17 86.93 0.54 1.62 16 28 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.13 0.37 8.02 -2.38 -0.02 0.35 16 30 H 0.08 1.45 7.74 -2.38 -0.02 1.43 16 31 H 0.09 1.56 7.55 -2.39 -0.02 1.54 16 32 H 0.16 4.18 3.78 -78.84 -0.30 3.88 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 37 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.06 2.72 2.37 -2.39 -0.01 2.72 16 40 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.13 0.96 8.02 -2.39 -0.02 0.95 16 42 H 0.11 1.29 8.03 -2.39 -0.02 1.27 16 Total: -1.00 -71.96 342.02 4.41 -67.55 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 0.70 Total: 5.70 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 5.84 Total: 14.42 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -4.47 Total: -100.70 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.09 Total: -33.77 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.76 Total: -1.53 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.67 Total: 48.33 kcal Total: -71.96 4.41 -67.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118521713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.477 kcal (2) G-P(sol) polarization free energy of solvation -71.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds