Wall clock time and date at job start Tue Mar 31 2020 14:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 F 1.39907 * 110.28934 * 310.85863 * 3 2 1 5 5 C 1.54619 * 110.32812 * 72.99665 * 3 2 1 6 6 C 1.55110 * 102.75797 * 97.20617 * 5 3 2 7 7 N 1.48118 * 103.31524 * 37.26526 * 6 5 3 8 8 C 1.34775 * 127.03446 * 140.73052 * 7 6 5 9 9 O 1.21346 * 119.99954 * 180.02562 * 8 7 6 10 10 C 1.49450 * 119.99791 * 0.04138 * 8 7 6 11 11 O 1.21344 * 120.00123 * 5.53396 * 10 8 7 12 12 N 1.34783 * 119.99656 * 185.54269 * 10 8 7 13 13 C 1.46923 * 120.63236 * 8.28979 * 12 10 8 14 14 C 1.52758 * 109.00869 * 233.58625 * 13 12 10 15 15 C 1.53040 * 109.38229 * 305.59050 * 14 13 12 16 16 C 1.53032 * 109.53907 * 61.23994 * 15 14 13 17 17 H 1.08994 * 109.50004 * 58.58702 * 16 15 14 18 18 C 1.50707 * 109.52307 * 178.66512 * 16 15 14 19 19 H 1.07994 * 119.99791 * 34.46957 * 18 16 15 20 20 C 1.37877 * 120.00100 * 214.46946 * 18 16 15 21 21 N 1.31507 * 119.99871 * 175.08421 * 20 18 16 22 22 Si 1.86806 * 119.99948 * 355.07951 * 20 18 16 23 23 H 1.48501 * 109.46914 * 95.27068 * 22 20 18 24 24 H 1.48492 * 109.47300 * 215.27405 * 22 20 18 25 25 H 1.48498 * 109.47115 * 335.27342 * 22 20 18 26 26 C 1.46929 * 120.62661 * 188.57363 * 12 10 8 27 27 C 1.47487 * 105.93183 * 320.76152 * 7 6 5 28 28 H 1.08995 * 110.73371 * 215.48297 * 5 3 2 29 29 H 1.08995 * 110.73800 * 338.80638 * 5 3 2 30 30 H 1.08996 * 110.58634 * 278.82632 * 6 5 3 31 31 H 1.08994 * 110.82346 * 155.81736 * 6 5 3 32 32 H 1.08997 * 109.58731 * 353.42145 * 13 12 10 33 33 H 1.08998 * 109.58412 * 113.84703 * 13 12 10 34 34 H 1.08997 * 109.56247 * 185.55309 * 14 13 12 35 35 H 1.08998 * 109.38580 * 65.51740 * 14 13 12 36 36 H 1.09003 * 109.45880 * 301.21802 * 15 14 13 37 37 H 1.09003 * 109.44519 * 181.25459 * 15 14 13 38 38 H 0.97007 * 119.99678 * 179.97438 * 21 20 18 39 39 H 1.09002 * 109.58528 * 246.15545 * 26 12 10 40 40 H 1.08996 * 109.58884 * 6.43582 * 26 12 10 41 41 H 1.09000 * 109.91194 * 266.08626 * 27 7 6 42 42 H 1.08995 * 110.07226 * 144.89893 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 9 3.0935 -0.8576 0.9925 5 6 3.1453 -0.4231 -1.3865 6 6 3.4417 0.9376 -2.0695 7 7 3.9597 1.7707 -0.9598 8 6 4.9714 2.6593 -1.0157 9 8 5.2924 3.2767 -0.0215 10 6 5.6978 2.8846 -2.3022 11 8 5.3138 2.3441 -3.3185 12 7 6.7795 3.6881 -2.3336 13 6 7.3651 4.2041 -1.0888 14 6 7.4674 5.7255 -1.1803 15 6 8.2405 6.1074 -2.4447 16 6 7.4904 5.5970 -3.6771 17 1 6.4885 6.0258 -3.6966 18 6 8.2350 6.0016 -4.9233 19 1 9.3142 6.0417 -4.9184 20 6 7.5385 6.3205 -6.0696 21 7 8.1811 6.7662 -7.1269 22 14 5.6820 6.1194 -6.1209 23 1 5.0345 7.4164 -5.7983 24 1 5.2685 5.6840 -7.4790 25 1 5.2670 5.0981 -5.1260 26 6 7.3917 4.0696 -3.6136 27 6 3.1423 1.4283 0.2192 28 1 4.0580 -1.0100 -1.2838 29 1 2.3885 -0.9782 -1.9406 30 1 2.5279 1.3679 -2.4792 31 1 4.1949 0.8240 -2.8491 32 1 6.7298 3.9321 -0.2459 33 1 8.3602 3.7814 -0.9504 34 1 7.9901 6.1096 -0.3044 35 1 6.4659 6.1536 -1.2231 36 1 9.2335 5.6590 -2.4125 37 1 8.3334 7.1921 -2.4995 38 1 7.6910 6.9902 -7.9336 39 1 8.3890 3.6357 -3.6853 40 1 6.7754 3.7066 -4.4360 41 1 2.3101 2.1264 0.3093 42 1 3.7538 1.4615 1.1208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118521714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:44 Heat of formation + Delta-G solvation = -72.365282 kcal Electronic energy + Delta-G solvation = -27877.469808 eV Core-core repulsion = 23772.643915 eV Total energy + Delta-G solvation = -4104.825893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.22891 -42.13990 -40.27074 -39.02349 -38.55911 -37.43246 -35.20442 -33.60489 -32.75919 -32.19413 -30.46638 -27.97477 -27.02267 -25.86247 -23.82584 -23.40213 -23.29852 -21.21120 -20.37442 -19.83477 -19.06742 -18.48212 -18.03464 -17.46074 -17.20069 -16.79998 -16.49200 -16.24131 -15.71831 -15.66752 -15.47506 -15.35065 -15.02477 -14.91229 -14.57637 -14.46741 -14.41980 -14.17183 -13.97513 -13.82627 -13.58137 -13.47194 -13.14743 -13.05540 -12.93452 -12.56858 -12.48778 -12.34136 -12.08202 -12.01307 -11.65598 -11.49447 -11.19076 -11.12500 -10.78498 -10.18009 -10.03762 -9.65145 -8.33512 -6.36550 0.23844 0.93886 1.25526 1.27918 1.29368 1.34811 1.44879 1.98964 2.08774 2.29995 2.32640 2.81819 2.93738 3.04518 3.15218 3.35823 3.92389 4.06074 4.11511 4.17841 4.24835 4.41106 4.44976 4.47974 4.49764 4.58875 4.69295 4.76789 4.85123 4.85962 4.93689 4.99911 5.11651 5.13120 5.25811 5.37649 5.58037 5.62738 5.68137 5.86457 6.03508 6.26318 6.29250 6.54046 6.72315 6.85938 7.30000 8.82908 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.003440 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.318656 B = 8136.713042 C = 8974.471230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.211 3.789 3 C 0.229 3.771 4 F -0.168 7.168 5 C -0.136 4.136 6 C 0.081 3.919 7 N -0.590 5.590 8 C 0.541 3.459 9 O -0.512 6.512 10 C 0.496 3.504 11 O -0.545 6.545 12 N -0.575 5.575 13 C 0.053 3.947 14 C -0.123 4.123 15 C -0.104 4.104 16 C 0.006 3.994 17 H 0.024 0.976 18 C -0.510 4.510 19 H 0.043 0.957 20 C 0.022 3.978 21 N -0.942 5.942 22 Si 0.931 3.069 23 H -0.272 1.272 24 H -0.286 1.286 25 H -0.252 1.252 26 C 0.120 3.880 27 C 0.091 3.909 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.157 0.843 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.267 0.733 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 -14.852 17.368 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.109 4.109 3 C 0.207 3.793 4 F -0.148 7.148 5 C -0.175 4.175 6 C -0.041 4.041 7 N -0.324 5.324 8 C 0.326 3.674 9 O -0.390 6.390 10 C 0.279 3.721 11 O -0.424 6.424 12 N -0.306 5.306 13 C -0.067 4.067 14 C -0.161 4.161 15 C -0.142 4.142 16 C -0.013 4.013 17 H 0.042 0.958 18 C -0.548 4.548 19 H 0.061 0.939 20 C -0.177 4.177 21 N -0.581 5.581 22 Si 0.756 3.244 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.176 1.176 26 C -0.002 4.002 27 C -0.033 4.033 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.173 0.827 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.124 0.876 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.549 -14.697 17.213 25.410 hybrid contribution -0.085 0.307 -0.814 0.874 sum -11.634 -14.390 16.399 24.726 Atomic orbital electron populations 1.81307 1.13332 1.07312 1.07261 1.28980 0.94529 0.93695 0.93722 1.18572 0.80025 0.90679 0.90058 1.93049 1.87573 1.71191 1.62955 1.23559 1.05375 0.98085 0.90434 1.23290 1.02030 0.88418 0.90328 1.48408 1.31392 1.39155 1.13425 1.19585 0.79935 0.79628 0.88281 1.90344 1.64233 1.47369 1.37048 1.20157 0.81913 0.80882 0.89147 1.90639 1.66976 1.48767 1.36031 1.48416 1.27141 1.45148 1.09915 1.23218 1.01472 0.94718 0.87326 1.21796 1.00482 0.95425 0.98444 1.21512 0.98724 1.00278 0.93645 1.19425 0.95937 0.91339 0.94625 0.95804 1.21167 0.93902 1.44486 0.95269 0.93878 1.25813 1.02423 0.94088 0.95330 1.70026 1.38002 1.45711 1.04406 0.85976 0.81321 0.79281 0.77779 1.19780 1.21238 1.17589 1.22191 0.97163 0.97498 0.83314 1.22705 0.96950 0.92695 0.90905 0.85548 0.85413 0.88840 0.86544 0.82738 0.90479 0.88352 0.92941 0.92418 0.92981 0.92433 0.91243 0.92015 0.87586 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.00 18.54 20.01 0.37 -7.63 16 2 C 0.21 2.87 14.04 89.44 1.26 4.13 16 3 C 0.23 2.28 1.60 -11.71 -0.02 2.26 16 4 F -0.17 -1.91 16.81 44.97 0.76 -1.15 16 5 C -0.14 -1.05 6.41 31.87 0.20 -0.85 16 6 C 0.08 1.15 6.57 86.79 0.57 1.72 16 7 N -0.59 -10.56 3.29 -810.66 -2.67 -13.23 16 8 C 0.54 13.45 7.85 87.27 0.69 14.14 16 9 O -0.51 -13.30 13.45 -3.23 -0.04 -13.34 16 10 C 0.50 15.67 7.70 87.27 0.67 16.34 16 11 O -0.54 -19.02 13.21 -3.23 -0.04 -19.06 16 12 N -0.57 -19.31 2.98 -821.33 -2.45 -21.76 16 13 C 0.05 1.45 6.23 86.22 0.54 1.99 16 14 C -0.12 -3.54 6.06 30.53 0.19 -3.35 16 15 C -0.10 -3.80 5.15 30.62 0.16 -3.64 16 16 C 0.01 0.29 1.78 -11.46 -0.02 0.27 16 17 H 0.02 1.10 5.62 -2.39 -0.01 1.09 16 18 C -0.51 -27.83 8.87 25.60 0.23 -27.60 16 19 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 20 C 0.02 1.24 5.47 84.66 0.46 1.70 16 21 N -0.94 -57.64 13.96 21.45 0.30 -57.34 16 22 Si 0.93 44.67 26.61 68.60 1.83 46.49 16 23 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.25 -11.74 5.94 99.48 0.59 -11.14 16 26 C 0.12 4.88 5.48 86.36 0.47 5.35 16 27 C 0.09 1.08 6.45 86.53 0.56 1.64 16 28 H 0.13 0.75 8.12 -2.39 -0.02 0.73 16 29 H 0.13 0.53 7.84 -2.39 -0.02 0.51 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.12 2.18 5.56 -2.39 -0.01 2.17 16 32 H 0.16 4.02 3.81 -77.32 -0.29 3.73 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 39 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.06 2.77 5.90 -2.39 -0.01 2.76 16 41 H 0.11 1.11 7.67 -2.39 -0.02 1.09 16 42 H 0.12 1.35 7.94 -2.39 -0.02 1.33 16 Total: -1.00 -69.51 344.48 4.66 -64.85 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.66 Total: 8.06 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 5.95 Total: 14.09 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -4.44 Total: -99.95 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.09 Total: -32.40 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.76 Total: -1.15 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.83 Total: 46.49 kcal Total: -69.51 4.66 -64.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118521714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.519 kcal (2) G-P(sol) polarization free energy of solvation -69.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds