Wall clock time and date at job start Tue Mar 31 2020 14:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00230 * 2 1 4 4 H 1.48496 * 109.46948 * 269.99984 * 3 2 1 5 5 H 1.48499 * 109.46663 * 29.99822 * 3 2 1 6 6 H 1.48498 * 109.47095 * 149.99672 * 3 2 1 7 7 C 1.37877 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99881 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99922 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.47351 * 184.55383 * 9 7 2 11 11 C 1.46897 * 110.99809 * 299.47355 * 10 9 7 12 12 C 1.50696 * 109.47424 * 287.99447 * 11 10 9 13 13 C 1.38234 * 119.99829 * 275.83988 * 12 11 10 14 14 C 1.38243 * 119.99846 * 179.76487 * 13 12 11 15 15 C 1.38230 * 119.99964 * 0.50303 * 14 13 12 16 16 C 1.38240 * 120.00100 * 359.75155 * 15 14 13 17 17 C 1.38227 * 119.99794 * 359.97438 * 16 15 14 18 18 C 1.46893 * 110.99630 * 63.42805 * 10 9 7 19 19 C 1.50699 * 109.47609 * 66.05177 * 18 10 9 20 20 C 1.40061 * 119.02847 * 89.99243 * 19 18 10 21 21 C 1.35604 * 121.94287 * 180.25851 * 20 19 18 22 22 C 1.40840 * 119.38861 * 359.50498 * 21 20 19 23 23 N 1.31016 * 138.56541 * 180.17954 * 22 21 20 24 24 O 1.21474 * 109.08895 * 180.25064 * 23 22 21 25 25 N 1.21471 * 116.28307 * 0.02562 * 24 23 22 26 26 C 1.31014 * 109.09301 * 0.02562 * 25 24 23 27 27 C 1.35600 * 119.02220 * 269.97985 * 19 18 10 28 28 H 0.97000 * 119.99759 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47188 * 64.55062 * 9 7 2 30 30 H 1.09003 * 109.47408 * 304.55598 * 9 7 2 31 31 H 1.09001 * 109.47271 * 47.99027 * 11 10 9 32 32 H 1.08993 * 109.47392 * 167.99287 * 11 10 9 33 33 H 1.08003 * 120.00174 * 359.97438 * 13 12 11 34 34 H 1.08002 * 119.99968 * 180.22963 * 14 13 12 35 35 H 1.07998 * 120.00304 * 179.71988 * 15 14 13 36 36 H 1.07999 * 119.99856 * 179.97438 * 16 15 14 37 37 H 1.08003 * 120.00117 * 179.97438 * 17 16 15 38 38 H 1.08995 * 109.47430 * 306.04543 * 18 10 9 39 39 H 1.09004 * 109.46996 * 186.05301 * 18 10 9 40 40 H 1.08003 * 119.02933 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.30573 * 179.72424 * 21 20 19 42 42 H 1.08001 * 120.30960 * 359.96902 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5748 -0.1083 11 6 3.5401 -3.3883 1.0246 12 6 4.2816 -2.9796 2.2712 13 6 5.5263 -3.5164 2.5423 14 6 6.2086 -3.1379 3.6834 15 6 5.6417 -2.2305 4.5587 16 6 4.3947 -1.6977 4.2903 17 6 3.7149 -2.0719 3.1464 18 6 3.5988 -3.1762 -1.3867 19 6 4.2897 -2.4601 -2.5184 20 6 5.5379 -2.9225 -2.9540 21 6 6.2139 -2.3201 -3.9635 22 6 5.6462 -1.2020 -4.6048 23 7 5.9419 -0.3694 -5.5722 24 8 5.0411 0.4367 -5.6918 25 7 4.1028 0.3117 -4.9305 26 6 4.3237 -0.7113 -4.1424 27 6 3.6843 -1.3872 -3.0851 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.7523 0.9291 30 1 3.8752 -0.6114 -0.8452 31 1 2.4710 -3.2345 1.1710 32 1 3.7306 -4.4412 0.8172 33 1 5.9671 -4.2290 1.8608 34 1 7.1827 -3.5545 3.8933 35 1 6.1728 -1.9382 5.4525 36 1 3.9516 -0.9891 4.9744 37 1 2.7404 -1.6560 2.9369 38 1 2.5190 -3.0876 -1.5060 39 1 3.8803 -4.2292 -1.3974 40 1 5.9771 -3.7816 -2.4686 41 1 7.1770 -2.6963 -4.2752 42 1 2.7209 -1.0536 -2.7286 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139217190.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:29 Heat of formation + Delta-G solvation = 173.141220 kcal Electronic energy + Delta-G solvation = -26812.125520 eV Core-core repulsion = 23148.714813 eV Total energy + Delta-G solvation = -3663.410707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.39596 -39.33817 -38.71737 -36.59343 -34.55411 -33.28295 -32.57639 -31.57790 -30.56996 -30.46341 -28.31513 -26.82468 -25.01855 -24.37629 -23.17770 -22.13928 -21.31242 -21.01505 -19.75376 -18.69921 -18.36616 -17.77173 -17.17766 -16.29571 -15.45800 -15.12222 -14.95169 -14.72430 -14.52471 -14.30257 -14.14343 -13.78971 -13.03652 -12.97147 -12.68473 -12.66718 -12.47045 -12.17357 -12.04006 -11.65380 -11.60481 -11.53058 -11.32788 -11.19058 -11.07475 -10.76738 -10.64540 -10.52873 -10.28315 -10.06061 -9.69194 -9.46911 -8.72058 -8.51602 -8.40607 -8.24971 -7.38904 -6.23872 -4.24540 0.21857 1.32553 1.74150 1.80061 2.16098 3.20598 3.29676 3.34099 3.34726 3.49517 3.67573 4.00167 4.15098 4.29523 4.74562 4.92546 4.99375 5.09710 5.12810 5.22454 5.25293 5.36813 5.40094 5.51639 5.55474 5.73184 5.77941 5.88904 5.92245 6.04480 6.11288 6.17899 6.26981 6.32950 6.44403 6.54902 6.65886 6.70882 6.76651 6.83370 6.90624 7.01477 7.12994 7.40368 7.42011 7.83065 7.85173 8.28821 8.67112 8.77004 9.39543 10.87961 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011144 B = 0.004751 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.055232 B = 5892.083584 C = 7372.106242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.082 3.918 3 Si 0.861 3.139 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.147 3.853 10 N -0.523 5.523 11 C 0.091 3.909 12 C -0.059 4.059 13 C -0.105 4.105 14 C -0.132 4.132 15 C -0.131 4.131 16 C -0.128 4.128 17 C -0.099 4.099 18 C 0.090 3.910 19 C -0.037 4.037 20 C -0.049 4.049 21 C -0.094 4.094 22 C 0.020 3.980 23 N -0.362 5.362 24 O 0.366 5.634 25 N -0.347 5.347 26 C 0.022 3.978 27 C -0.052 4.052 28 H 0.265 0.735 29 H 0.034 0.966 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.131 0.869 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.111 -7.818 -0.310 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.122 4.122 3 Si 0.688 3.312 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.592 4.592 8 H 0.096 0.904 9 C 0.020 3.980 10 N -0.246 5.246 11 C -0.036 4.036 12 C -0.059 4.059 13 C -0.123 4.123 14 C -0.150 4.150 15 C -0.149 4.149 16 C -0.146 4.146 17 C -0.117 4.117 18 C -0.038 4.038 19 C -0.042 4.042 20 C -0.072 4.072 21 C -0.114 4.114 22 C -0.132 4.132 23 N -0.087 5.087 24 O 0.131 5.869 25 N -0.069 5.069 26 C -0.130 4.130 27 C -0.073 4.073 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.149 0.851 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 11.475 -6.830 -1.108 13.400 hybrid contribution -0.522 0.617 0.634 1.027 sum 10.953 -6.213 -0.474 12.601 Atomic orbital electron populations 1.69899 1.06234 1.27160 1.49619 1.24857 0.94520 0.98815 0.94043 0.87049 0.80752 0.84285 0.79108 1.19890 1.21090 1.18755 1.21566 0.90359 0.94524 1.52727 0.90414 1.20308 0.94637 0.85681 0.97376 1.62515 1.58664 1.04044 0.99375 1.20988 0.98576 0.95700 0.88323 1.19823 0.94577 0.96123 0.95395 1.20970 0.94478 1.00245 0.96654 1.21017 0.99618 0.98964 0.95431 1.21024 0.96008 0.98361 0.99545 1.21124 0.95366 1.00299 0.97792 1.21350 1.00773 0.96156 0.93431 1.21038 0.99050 0.96089 0.87575 1.19612 0.93879 0.94831 0.95909 1.20939 0.93411 0.98951 0.93863 1.19797 1.00902 0.93465 0.97255 1.22913 0.95218 0.99622 0.95492 1.75135 1.11744 1.03187 1.18616 1.85336 1.17334 1.41054 1.43208 1.75240 1.09361 1.17800 1.04498 1.22985 0.95580 0.94328 1.00110 1.20254 1.01661 0.93725 0.91642 0.92510 0.94826 0.95569 0.91514 0.91699 0.86519 0.86890 0.86986 0.86673 0.85102 0.91370 0.90869 0.84016 0.84172 0.82301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.96 55.43 0.77 -24.56 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.86 20.80 27.38 -169.99 -4.65 16.15 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.26 -6.25 6.67 56.52 0.38 -5.87 16 7 C -0.55 -13.51 7.57 -34.44 -0.26 -13.77 16 8 H 0.08 2.04 6.19 -52.49 -0.33 1.71 16 9 C 0.15 3.15 3.56 -4.97 -0.02 3.13 16 10 N -0.52 -9.19 4.65 -238.97 -1.11 -10.30 16 11 C 0.09 1.50 4.94 -4.98 -0.02 1.48 16 12 C -0.06 -0.96 4.89 -104.62 -0.51 -1.47 16 13 C -0.10 -1.50 9.73 -39.58 -0.38 -1.88 16 14 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 15 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 16 C -0.13 -1.93 10.05 -39.58 -0.40 -2.32 16 17 C -0.10 -1.69 8.54 -39.58 -0.34 -2.03 16 18 C 0.09 1.40 4.89 -4.98 -0.02 1.37 16 19 C -0.04 -0.57 4.89 -104.88 -0.51 -1.09 16 20 C -0.05 -0.61 9.51 -39.84 -0.38 -0.99 16 21 C -0.09 -1.19 10.08 -39.54 -0.40 -1.59 16 22 C 0.02 0.31 7.76 -83.03 -0.64 -0.33 16 23 N -0.36 -5.74 12.29 31.88 0.39 -5.35 16 24 O 0.37 5.93 11.67 26.94 0.31 6.24 16 25 N -0.35 -6.28 12.29 31.88 0.39 -5.89 16 26 C 0.02 0.39 7.76 -83.03 -0.64 -0.26 16 27 C -0.05 -0.92 7.81 -39.54 -0.31 -1.23 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.03 0.78 6.01 -51.93 -0.31 0.47 16 30 H 0.03 0.59 5.08 -51.93 -0.26 0.33 16 31 H 0.07 1.26 6.02 -51.93 -0.31 0.95 16 32 H 0.06 0.90 7.79 -51.93 -0.40 0.49 16 33 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 34 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.13 2.47 8.06 -52.48 -0.42 2.04 16 38 H 0.07 1.21 6.53 -51.93 -0.34 0.87 16 39 H 0.07 0.91 7.79 -51.93 -0.40 0.50 16 40 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 41 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.16 3.20 7.59 -52.49 -0.40 2.80 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -28.51 348.37 -9.26 -37.77 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.88 Total: 3.92 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -5.74 Total: -23.23 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.45 Total: -46.10 kcal Atomic # 8 Polarization: 5.93 SS G_CDS: 0.31 Total: 6.24 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.65 Total: 16.15 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.51 -9.26 -37.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139217190.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.913 kcal (2) G-P(sol) polarization free energy of solvation -28.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds