Wall clock time and date at job start Tue Mar 31 2020 13:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 119.99776 * 2 1 4 4 H 1.48503 * 109.47551 * 240.00466 * 3 2 1 5 5 H 1.48502 * 109.47266 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47044 * 120.00126 * 3 2 1 7 7 C 1.38943 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00094 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00426 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00427 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99706 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99961 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46866 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99773 * 179.97438 * 13 12 10 15 15 C 1.53008 * 109.46852 * 179.97438 * 14 13 12 16 16 N 1.46505 * 109.46668 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99553 * 180.02562 * 16 15 14 18 18 O 1.21552 * 120.00298 * 0.02562 * 17 16 15 19 19 C 1.47845 * 120.00012 * 179.97438 * 17 16 15 20 20 C 1.39571 * 120.14594 * 179.97438 * 19 17 16 21 21 C 1.37956 * 119.85308 * 180.02562 * 20 19 17 22 22 C 1.38361 * 120.14496 * 0.02562 * 21 20 19 23 23 C 1.50706 * 119.85111 * 179.97438 * 22 21 20 24 24 F 1.39903 * 109.46746 * 90.00273 * 23 22 21 25 25 C 1.38356 * 120.29417 * 0.23278 * 22 21 20 26 26 C 1.37960 * 120.14290 * 359.48864 * 25 22 21 27 27 H 0.96992 * 120.00194 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99791 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.46807 * 59.99921 * 12 10 9 30 30 H 1.08998 * 109.46816 * 300.00239 * 12 10 9 31 31 H 1.00902 * 110.99543 * 303.95433 * 13 12 10 32 32 H 1.09001 * 109.47122 * 59.99888 * 14 13 12 33 33 H 1.08992 * 109.47491 * 299.99695 * 14 13 12 34 34 H 1.08996 * 109.46625 * 60.00352 * 15 14 13 35 35 H 1.08992 * 109.47107 * 300.00277 * 15 14 13 36 36 H 0.96997 * 120.00523 * 359.97438 * 16 15 14 37 37 H 1.08003 * 120.07690 * 0.02562 * 20 19 17 38 38 H 1.08001 * 119.92660 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46646 * 209.99569 * 23 22 21 40 40 H 1.09000 * 109.47248 * 330.00286 * 23 22 21 41 41 H 1.07994 * 119.92715 * 179.74290 * 25 22 21 42 42 H 1.07998 * 120.07313 * 180.24959 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6966 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1987 -5.9794 -0.0004 14 6 1.4984 -7.2707 -0.0003 15 6 2.5235 -8.4067 -0.0002 16 7 1.8250 -9.6946 -0.0007 17 6 2.5299 -10.8433 -0.0002 18 8 3.7450 -10.8109 0.0012 19 6 1.8252 -12.1430 -0.0002 20 6 2.5521 -13.3345 -0.0002 21 6 1.8883 -14.5439 -0.0007 22 6 0.5051 -14.5773 -0.0017 23 6 -0.2132 -15.9022 -0.0029 24 9 -0.4365 -16.3126 1.3158 25 6 -0.2215 -13.3999 -0.0071 26 6 0.4299 -12.1838 -0.0009 27 1 -0.4850 0.8400 0.0004 28 1 0.3536 -2.3907 -0.0005 29 1 0.6177 -4.9204 -0.8913 30 1 0.6170 -4.9208 0.8886 31 1 2.8341 -5.9123 -0.7813 32 1 0.8739 -7.3454 -0.8905 33 1 0.8732 -7.3450 0.8894 34 1 3.1482 -8.3321 0.8898 35 1 3.1484 -8.3323 -0.8901 36 1 0.8554 -9.7205 -0.0007 37 1 3.6318 -13.3098 0.0002 38 1 2.4496 -15.4666 -0.0003 39 1 -1.1684 -15.7970 -0.5173 40 1 0.3964 -16.6456 -0.5165 41 1 -1.3009 -13.4329 -0.0121 42 1 -0.1384 -11.2655 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152857750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:48 Heat of formation + Delta-G solvation = -98.213103 kcal Electronic energy + Delta-G solvation = -24764.628971 eV Core-core repulsion = 20658.682233 eV Total energy + Delta-G solvation = -4105.946738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.16407 -40.59372 -38.88657 -38.32045 -36.35986 -34.51538 -33.80801 -32.92648 -31.58036 -31.24886 -29.54650 -27.43896 -25.92472 -24.04641 -23.28884 -22.87572 -22.10593 -20.69343 -19.31856 -18.46117 -17.90484 -16.97211 -16.74358 -16.39700 -16.27250 -16.08474 -15.89111 -15.41620 -15.23448 -14.84111 -14.61226 -14.44549 -14.11212 -14.01009 -13.96572 -13.49741 -13.40654 -13.11124 -12.98981 -12.42273 -11.98916 -11.88075 -11.67252 -11.54509 -11.50580 -11.46278 -11.45316 -11.02341 -10.45035 -10.29386 -10.22474 -9.59104 -9.54369 -9.51759 -9.28340 -8.52968 -8.15917 -7.98299 -6.43375 -3.84334 0.23505 0.80887 2.42745 2.74460 3.19592 3.25368 3.30020 3.34870 3.82055 3.88037 4.04092 4.09474 4.26522 4.29121 4.39147 4.42728 4.51107 4.77239 4.81725 4.94070 4.98220 5.03594 5.14951 5.20465 5.24091 5.33846 5.41325 5.65824 5.69259 5.74858 5.81899 5.84644 5.87569 5.91643 6.08964 6.22659 6.27946 7.05059 7.17047 7.53432 7.53877 7.88279 8.04057 8.59076 9.16020 9.51792 10.03194 10.74222 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.038465 B = 0.001499 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.756254 B =18672.015281 C =19290.812509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.582 6.582 12 C 0.052 3.948 13 N -0.665 5.665 14 C 0.049 3.951 15 C 0.119 3.881 16 N -0.722 5.722 17 C 0.556 3.444 18 O -0.531 6.531 19 C -0.121 4.121 20 C -0.061 4.061 21 C -0.105 4.105 22 C -0.115 4.115 23 C 0.104 3.896 24 F -0.209 7.209 25 C -0.104 4.104 26 C -0.088 4.088 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.353 0.647 32 H 0.033 0.967 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.399 0.601 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.133 0.867 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 -30.650 -2.317 31.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.298 5.298 14 C -0.081 4.081 15 C -0.004 4.004 16 N -0.375 5.375 17 C 0.342 3.658 18 O -0.408 6.408 19 C -0.124 4.124 20 C -0.080 4.080 21 C -0.123 4.123 22 C -0.116 4.116 23 C 0.049 3.951 24 F -0.190 7.190 25 C -0.122 4.122 26 C -0.107 4.107 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.173 0.827 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.234 0.766 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.151 0.849 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.588 -30.406 -1.608 30.793 hybrid contribution -1.169 0.897 -0.831 1.692 sum -5.757 -29.510 -2.439 30.165 Atomic orbital electron populations 1.69602 1.05942 1.28297 1.50489 1.25261 0.95640 0.99737 0.97228 0.85906 0.78756 0.80378 0.79111 1.19899 1.20973 1.19855 1.19669 0.93396 0.82230 1.47750 0.87923 1.41844 1.09187 1.04576 1.64306 1.19769 0.88397 0.84688 0.84687 1.90535 1.13721 1.87010 1.55350 1.21670 0.94210 0.90800 1.01335 1.59923 1.18824 0.99402 1.51697 1.22080 0.95533 0.89437 1.01055 1.21339 0.95013 0.80334 1.03731 1.45825 1.10386 1.05925 1.75345 1.18222 0.87113 0.83751 0.76687 1.90811 1.13319 1.87482 1.49171 1.20076 0.93800 0.93783 1.04733 1.21319 1.01123 0.90646 0.94920 1.21074 0.93412 0.98348 0.99446 1.20468 0.94527 0.95496 1.01119 1.20858 1.01235 0.93127 0.79876 1.92834 1.96200 1.91462 1.38536 1.21006 1.00284 0.91461 0.99489 1.21333 0.93172 0.98450 0.97720 0.91808 0.77455 0.93696 0.89450 0.82748 0.94885 0.90402 0.89877 0.91061 0.76564 0.84110 0.84903 0.89550 0.89557 0.84949 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 10 C 0.44 10.27 7.82 -10.98 -0.09 10.18 16 11 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 12 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 13 N -0.67 -10.32 6.13 -115.06 -0.70 -11.02 16 14 C 0.05 0.54 5.80 -3.82 -0.02 0.52 16 15 C 0.12 1.33 5.94 -4.04 -0.02 1.31 16 16 N -0.72 -6.65 5.51 -61.25 -0.34 -6.99 16 17 C 0.56 6.26 7.77 -12.33 -0.10 6.17 16 18 O -0.53 -8.07 16.35 5.32 0.09 -7.98 16 19 C -0.12 -1.07 5.87 -104.97 -0.62 -1.68 16 20 C -0.06 -0.51 9.60 -39.19 -0.38 -0.89 16 21 C -0.10 -0.67 9.68 -39.64 -0.38 -1.06 16 22 C -0.12 -0.68 5.60 -104.53 -0.59 -1.27 16 23 C 0.10 0.43 7.67 36.01 0.28 0.71 16 24 F -0.21 -1.57 17.34 2.25 0.04 -1.53 16 25 C -0.10 -0.59 9.68 -39.64 -0.38 -0.97 16 26 C -0.09 -0.56 9.54 -39.18 -0.37 -0.93 16 27 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.35 5.68 8.43 -39.29 -0.33 5.35 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.40 2.45 6.51 -40.82 -0.27 2.18 16 37 H 0.14 1.20 7.65 -52.48 -0.40 0.79 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.09 0.19 8.08 -51.93 -0.42 -0.23 16 40 H 0.09 0.19 8.08 -51.93 -0.42 -0.23 16 41 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.13 0.51 6.41 -52.49 -0.34 0.18 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -34.92 370.11 -7.94 -42.86 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.39 Total: 11.70 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -2.94 Total: 4.94 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.38 Total: -55.81 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.17 Total: -23.70 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.92 -7.94 -42.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152857750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.358 kcal (2) G-P(sol) polarization free energy of solvation -34.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds