Wall clock time and date at job start Tue Mar 31 2020 13:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 119.99776 * 2 1 4 4 H 1.48503 * 109.47551 * 240.00466 * 3 2 1 5 5 H 1.48502 * 109.47266 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47044 * 120.00126 * 3 2 1 7 7 C 1.38943 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00094 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00426 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00427 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99706 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99961 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46866 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99773 * 179.97438 * 13 12 10 15 15 C 1.53008 * 109.46852 * 179.97438 * 14 13 12 16 16 N 1.46505 * 109.46668 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99553 * 180.02562 * 16 15 14 18 18 O 1.21552 * 120.00298 * 0.02562 * 17 16 15 19 19 C 1.47845 * 120.00012 * 179.97438 * 17 16 15 20 20 C 1.39571 * 120.14594 * 179.97438 * 19 17 16 21 21 C 1.37956 * 119.85308 * 180.02562 * 20 19 17 22 22 C 1.38361 * 120.14496 * 0.02562 * 21 20 19 23 23 C 1.50706 * 119.85111 * 179.97438 * 22 21 20 24 24 F 1.39903 * 109.46746 * 90.00273 * 23 22 21 25 25 C 1.38356 * 120.29417 * 0.23278 * 22 21 20 26 26 C 1.37960 * 120.14290 * 359.48864 * 25 22 21 27 27 H 0.96992 * 120.00194 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99791 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.46807 * 59.99921 * 12 10 9 30 30 H 1.08998 * 109.46816 * 300.00239 * 12 10 9 31 31 H 1.00902 * 110.99543 * 303.95433 * 13 12 10 32 32 H 1.09001 * 109.47122 * 59.99888 * 14 13 12 33 33 H 1.08992 * 109.47491 * 299.99695 * 14 13 12 34 34 H 1.08996 * 109.46625 * 60.00352 * 15 14 13 35 35 H 1.08992 * 109.47107 * 300.00277 * 15 14 13 36 36 H 0.96997 * 120.00523 * 359.97438 * 16 15 14 37 37 H 1.08003 * 120.07690 * 0.02562 * 20 19 17 38 38 H 1.08001 * 119.92660 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46646 * 209.99569 * 23 22 21 40 40 H 1.09000 * 109.47248 * 330.00286 * 23 22 21 41 41 H 1.07994 * 119.92715 * 179.74290 * 25 22 21 42 42 H 1.07998 * 120.07313 * 180.24959 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6966 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1987 -5.9794 -0.0004 14 6 1.4984 -7.2707 -0.0003 15 6 2.5235 -8.4067 -0.0002 16 7 1.8250 -9.6946 -0.0007 17 6 2.5299 -10.8433 -0.0002 18 8 3.7450 -10.8109 0.0012 19 6 1.8252 -12.1430 -0.0002 20 6 2.5521 -13.3345 -0.0002 21 6 1.8883 -14.5439 -0.0007 22 6 0.5051 -14.5773 -0.0017 23 6 -0.2132 -15.9022 -0.0029 24 9 -0.4365 -16.3126 1.3158 25 6 -0.2215 -13.3999 -0.0071 26 6 0.4299 -12.1838 -0.0009 27 1 -0.4850 0.8400 0.0004 28 1 0.3536 -2.3907 -0.0005 29 1 0.6177 -4.9204 -0.8913 30 1 0.6170 -4.9208 0.8886 31 1 2.8341 -5.9123 -0.7813 32 1 0.8739 -7.3454 -0.8905 33 1 0.8732 -7.3450 0.8894 34 1 3.1482 -8.3321 0.8898 35 1 3.1484 -8.3323 -0.8901 36 1 0.8554 -9.7205 -0.0007 37 1 3.6318 -13.3098 0.0002 38 1 2.4496 -15.4666 -0.0003 39 1 -1.1684 -15.7970 -0.5173 40 1 0.3964 -16.6456 -0.5165 41 1 -1.3009 -13.4329 -0.0121 42 1 -0.1384 -11.2655 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152857750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:47 Heat of formation + Delta-G solvation = -124.842848 kcal Electronic energy + Delta-G solvation = -24765.783724 eV Core-core repulsion = 20658.682233 eV Total energy + Delta-G solvation = -4107.101491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.59586 -41.32656 -40.16778 -39.50502 -37.50699 -36.02210 -35.34973 -33.50297 -33.25368 -32.08319 -30.60368 -28.24116 -27.27236 -25.58428 -23.78487 -23.63791 -22.97171 -21.42111 -21.10022 -19.92545 -19.16972 -17.79126 -17.58311 -17.28579 -17.15987 -16.79574 -16.72412 -16.56992 -16.28621 -16.09533 -15.76815 -15.38740 -15.33113 -15.11223 -14.88052 -14.58324 -14.35664 -14.07222 -13.92949 -13.54937 -13.48398 -13.31603 -12.93557 -12.61834 -12.44886 -12.42452 -12.29480 -12.12169 -12.11042 -11.83299 -11.50516 -11.19113 -10.36910 -10.34645 -10.03984 -10.01610 -9.96008 -9.38821 -8.46703 -5.95427 -0.33776 0.32743 1.40105 1.42355 1.52919 1.70350 1.90759 2.05498 2.30444 2.74649 3.00363 3.20721 3.40597 3.54631 3.68366 3.71739 3.88026 3.91990 4.09161 4.13049 4.14034 4.31739 4.35781 4.44849 4.50386 4.52655 4.61015 4.65724 4.80808 4.86934 4.91608 4.97370 5.16897 5.24654 5.29086 5.39153 5.40961 5.79517 5.83953 6.06740 6.31639 6.41679 6.60316 7.08455 7.12738 7.56247 8.12048 8.70274 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.038465 B = 0.001499 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.756254 B =18672.015281 C =19290.812509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.571 5.571 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.068 3.932 13 N -0.687 5.687 14 C 0.059 3.941 15 C 0.126 3.874 16 N -0.706 5.706 17 C 0.552 3.448 18 O -0.582 6.582 19 C -0.142 4.142 20 C -0.080 4.080 21 C -0.109 4.109 22 C -0.116 4.116 23 C 0.099 3.901 24 F -0.229 7.229 25 C -0.105 4.105 26 C -0.083 4.083 27 H 0.278 0.722 28 H 0.398 0.602 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.346 0.654 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.417 0.583 37 H 0.126 0.874 38 H 0.150 0.850 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.161 0.839 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.979 -31.711 -2.659 33.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.096 0.904 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.064 4.064 13 N -0.320 5.320 14 C -0.070 4.070 15 C 0.002 3.998 16 N -0.359 5.359 17 C 0.341 3.659 18 O -0.463 6.463 19 C -0.145 4.145 20 C -0.099 4.099 21 C -0.127 4.127 22 C -0.117 4.117 23 C 0.045 3.955 24 F -0.210 7.210 25 C -0.123 4.123 26 C -0.102 4.102 27 H 0.087 0.913 28 H 0.232 0.768 29 H 0.092 0.908 30 H 0.128 0.872 31 H 0.165 0.835 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.256 0.744 37 H 0.144 0.856 38 H 0.168 0.832 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.179 0.821 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.408 -31.485 -1.947 32.404 hybrid contribution -0.336 1.120 -0.731 1.379 sum -7.744 -30.365 -2.678 31.451 Atomic orbital electron populations 1.69654 1.06735 1.29381 1.50137 1.26004 0.96547 1.02303 0.96188 0.85007 0.77790 0.76753 0.78892 1.19745 1.19375 1.19878 1.19634 0.92726 0.84154 1.50182 0.90449 1.41904 1.09364 1.04632 1.64974 1.20951 0.88275 0.86322 0.82266 1.90504 1.16051 1.87992 1.56708 1.21525 0.93721 0.87454 1.03672 1.59885 1.19374 1.00842 1.51871 1.22071 0.95170 0.86735 1.03068 1.21111 0.95111 0.81466 1.02109 1.45622 1.11193 1.04734 1.74353 1.18698 0.86674 0.84961 0.75602 1.90779 1.15575 1.88220 1.51730 1.19982 0.94996 0.92362 1.07166 1.21356 1.00746 0.91631 0.96158 1.21289 0.94151 0.98201 0.99031 1.20796 0.94327 0.96753 0.99784 1.21135 1.02825 0.92565 0.79005 1.92795 1.96357 1.91606 1.40245 1.21398 1.01762 0.90873 0.98245 1.21602 0.91980 1.00089 0.96519 0.91256 0.76826 0.90802 0.87246 0.83519 0.92218 0.88684 0.92203 0.92271 0.74434 0.85589 0.83196 0.86955 0.87595 0.82106 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.92 13.05 21.66 0.28 -48.63 16 2 C -0.01 -0.55 5.50 84.92 0.47 -0.09 16 3 Si 0.99 42.79 29.55 68.60 2.03 44.81 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.57 -28.92 5.29 -306.99 -1.62 -30.54 16 10 C 0.43 20.36 7.82 87.66 0.69 21.05 16 11 O -0.63 -34.85 15.78 -3.06 -0.05 -34.90 16 12 C 0.07 2.18 6.17 85.56 0.53 2.71 16 13 N -0.69 -20.47 6.13 -517.94 -3.17 -23.64 16 14 C 0.06 1.14 5.80 86.31 0.50 1.65 16 15 C 0.13 2.77 5.94 86.38 0.51 3.28 16 16 N -0.71 -12.26 5.51 -465.96 -2.57 -14.83 16 17 C 0.55 12.67 7.77 86.79 0.67 13.34 16 18 O -0.58 -18.84 16.35 -3.88 -0.06 -18.90 16 19 C -0.14 -2.45 5.87 -20.09 -0.12 -2.57 16 20 C -0.08 -1.37 9.60 22.52 0.22 -1.15 16 21 C -0.11 -1.29 9.68 22.23 0.22 -1.08 16 22 C -0.12 -1.09 5.60 -19.80 -0.11 -1.21 16 23 C 0.10 0.53 7.67 71.24 0.55 1.08 16 24 F -0.23 -2.94 17.34 44.97 0.78 -2.16 16 25 C -0.11 -0.86 9.68 22.23 0.22 -0.64 16 26 C -0.08 -0.87 9.54 22.53 0.21 -0.65 16 27 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 28 H 0.40 18.86 7.90 -92.71 -0.73 18.12 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.35 11.08 8.43 -89.69 -0.76 10.32 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.42 4.02 6.51 -92.71 -0.60 3.41 16 37 H 0.13 2.41 7.65 -2.91 -0.02 2.39 16 38 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.11 0.05 8.08 -2.39 -0.02 0.03 16 40 H 0.11 0.16 8.08 -2.39 -0.02 0.14 16 41 H 0.16 0.39 8.06 -2.91 -0.02 0.36 16 42 H 0.16 0.67 6.41 -2.91 -0.02 0.65 16 Total: -1.00 -78.73 370.11 -0.03 -78.76 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -1.01 Total: 32.64 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 5.36 Total: 17.40 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -7.08 Total: -117.65 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -0.11 Total: -53.80 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -78.73 -0.03 -78.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152857750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.082 kcal (2) G-P(sol) polarization free energy of solvation -78.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds