Wall clock time and date at job start Tue Mar 31 2020 14:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37900 * 120.05970 * 2 1 4 4 C 1.38423 * 120.21257 * 180.26139 * 3 2 1 5 5 C 1.38248 * 120.33981 * 359.75821 * 4 3 2 6 6 C 1.38280 * 120.11694 * 359.95748 * 5 4 3 7 7 F 1.35102 * 120.10722 * 179.97438 * 6 5 4 8 8 C 1.39612 * 120.05803 * 179.72188 * 2 1 3 9 9 C 1.47698 * 120.16892 * 359.97438 * 8 2 1 10 10 O 1.21573 * 119.99926 * 269.72682 * 9 8 2 11 11 N 1.34777 * 120.00076 * 89.45179 * 9 8 2 12 12 C 1.46499 * 120.00195 * 180.27916 * 11 9 8 13 13 C 1.52997 * 109.47551 * 179.97438 * 12 11 9 14 14 N 1.46893 * 109.47217 * 179.97438 * 13 12 11 15 15 C 1.46904 * 111.00073 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47182 * 179.97438 * 15 14 13 17 17 O 1.21292 * 120.00205 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99740 * 180.02562 * 16 15 14 19 19 C 1.37091 * 119.99908 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00342 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00219 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00060 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00374 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47305 * 89.99553 * 23 21 19 25 25 H 1.48502 * 109.47123 * 210.00022 * 23 21 19 26 26 H 1.48504 * 109.46868 * 329.99844 * 23 21 19 27 27 H 1.09004 * 109.46641 * 270.28295 * 1 2 3 28 28 H 1.09002 * 109.47405 * 30.27614 * 1 2 3 29 29 H 1.09000 * 109.47316 * 150.28090 * 1 2 3 30 30 H 1.07997 * 119.89221 * 359.97438 * 3 2 1 31 31 H 1.07992 * 119.82566 * 179.74488 * 4 3 2 32 32 H 1.07991 * 119.93975 * 179.97438 * 5 4 3 33 33 H 0.97000 * 119.99736 * 0.27188 * 11 9 8 34 34 H 1.08998 * 109.46795 * 299.99885 * 12 11 9 35 35 H 1.09002 * 109.47196 * 59.99076 * 12 11 9 36 36 H 1.09007 * 109.46479 * 299.99856 * 13 12 11 37 37 H 1.08997 * 109.46852 * 59.99432 * 13 12 11 38 38 H 1.00902 * 111.00363 * 56.04519 * 14 13 12 39 39 H 1.09005 * 109.47442 * 300.00371 * 15 14 13 40 40 H 1.09004 * 109.46445 * 59.99751 * 15 14 13 41 41 H 0.97000 * 119.99960 * 0.02562 * 18 16 15 42 42 H 0.97001 * 120.00389 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1935 0.0000 4 6 3.5820 1.1972 -0.0055 5 6 4.2835 0.0060 -0.0059 6 6 3.6049 -1.1989 0.0000 7 9 4.2907 -2.3629 -0.0010 8 6 2.2063 -1.2084 0.0059 9 6 1.4729 -2.4903 0.0127 10 8 1.1758 -3.0151 1.0683 11 7 1.1281 -3.0757 -1.1514 12 6 0.3953 -4.3442 -1.1446 13 6 0.1301 -4.7877 -2.5847 14 7 -0.6042 -6.0600 -2.5778 15 6 -0.8776 -6.5174 -3.9468 16 6 -1.6298 -7.8224 -3.8996 17 8 -1.9101 -8.3225 -2.8307 18 7 -1.9901 -8.4343 -5.0451 19 6 -2.6739 -9.6217 -5.0022 20 1 -2.9235 -10.0671 -4.0505 21 6 -3.0450 -10.2529 -6.1831 22 7 -2.7409 -9.7113 -7.3412 23 14 -3.9773 -11.8705 -6.1247 24 1 -5.4373 -11.5999 -6.1018 25 1 -3.6424 -12.6785 -7.3248 26 1 -3.5934 -12.6191 -4.9010 27 1 -0.3633 0.0051 1.0277 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3634 -0.8925 -0.5095 30 1 1.6570 2.1284 -0.0004 31 1 4.1166 2.1355 -0.0096 32 1 5.3634 0.0164 -0.0106 33 1 1.3651 -2.6569 -1.9936 34 1 0.9876 -5.1032 -0.6335 35 1 -0.5536 -4.2128 -0.6246 36 1 -0.4624 -4.0285 -3.0953 37 1 1.0789 -4.9189 -3.1050 38 1 -1.4579 -5.9819 -2.0457 39 1 -1.4776 -5.7703 -4.4666 40 1 0.0640 -6.6601 -4.4770 41 1 -1.7650 -8.0349 -5.8999 42 1 -2.9996 -10.1521 -8.1657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153616545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:34 Heat of formation + Delta-G solvation = -94.866461 kcal Electronic energy + Delta-G solvation = -25542.846005 eV Core-core repulsion = 21437.044388 eV Total energy + Delta-G solvation = -4105.801617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.34979 -40.53711 -38.85069 -38.30920 -36.32345 -34.41430 -33.77589 -33.32697 -31.51332 -31.22776 -29.32648 -27.72125 -26.14738 -24.44524 -23.56104 -22.33327 -22.11708 -20.84237 -19.30230 -18.30171 -17.89766 -17.44526 -17.14358 -16.55688 -16.22538 -15.89094 -15.81259 -15.59053 -15.00133 -14.55739 -14.47813 -14.23729 -14.06624 -13.94188 -13.80903 -13.64528 -13.40377 -13.18752 -12.73675 -12.44717 -12.31039 -12.29591 -11.94878 -11.81693 -11.53550 -11.48785 -11.44363 -11.03864 -10.39598 -10.31894 -10.22336 -9.52080 -9.46205 -9.34793 -9.19829 -8.51835 -8.14625 -7.97570 -6.42780 -3.83595 0.43785 0.61874 2.21995 2.71458 2.98597 3.17614 3.26453 3.32836 3.64046 3.88748 4.05940 4.14868 4.21308 4.31540 4.42909 4.62209 4.67042 4.82887 4.95520 4.97581 5.10752 5.13949 5.15884 5.24830 5.35487 5.39690 5.46781 5.62982 5.70502 5.71178 5.77648 5.85765 5.88437 5.92833 6.09309 6.23685 6.27099 7.05604 7.15254 7.54502 7.55082 7.84657 8.05013 8.59820 9.16822 9.52639 10.03996 10.74908 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.031279 B = 0.001747 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.953679 B =16023.906012 C =16109.425396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.021 4.021 3 C -0.134 4.134 4 C -0.071 4.071 5 C -0.162 4.162 6 C 0.137 3.863 7 F -0.129 7.129 8 C -0.163 4.163 9 C 0.566 3.434 10 O -0.521 6.521 11 N -0.718 5.718 12 C 0.118 3.882 13 C 0.050 3.950 14 N -0.665 5.665 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.402 0.598 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.352 0.648 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.901 26.848 8.791 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.021 4.021 3 C -0.152 4.152 4 C -0.089 4.089 5 C -0.181 4.181 6 C 0.117 3.883 7 F -0.107 7.107 8 C -0.167 4.167 9 C 0.351 3.649 10 O -0.396 6.396 11 N -0.370 5.370 12 C -0.005 4.005 13 C -0.080 4.080 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.236 0.764 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.172 0.828 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.020 25.573 10.146 30.023 hybrid contribution -0.627 0.042 -1.367 1.504 sum 11.393 25.614 8.779 29.376 Atomic orbital electron populations 1.20944 0.89823 1.03658 1.03672 1.19811 0.96559 0.90788 0.94990 1.21072 0.94247 0.97646 1.02212 1.21166 0.94079 0.97746 0.95906 1.21119 1.01275 0.90797 1.04860 1.17649 0.88263 0.82059 1.00358 1.91566 1.79290 1.46450 1.93375 1.19845 0.92276 0.94734 1.09848 1.17949 0.78992 0.83766 0.84224 1.90853 1.53751 1.64151 1.30834 1.45927 1.58137 1.24575 1.08339 1.21360 0.97153 0.84471 0.97520 1.22073 0.99685 0.91093 0.95190 1.59932 1.28731 1.27370 1.13789 1.21674 1.00352 0.96242 0.89756 1.19771 0.85249 0.87361 0.85119 1.90536 1.59440 1.67261 1.29347 1.41853 1.50008 1.21351 1.06762 1.19714 1.30933 0.97650 0.94599 0.87873 1.25270 0.98169 0.99902 0.94630 1.69611 1.47085 1.40152 0.97487 0.85844 0.79379 0.81127 0.77868 1.20421 1.20916 1.19374 0.89852 0.90275 0.91040 0.84578 0.84436 0.84043 0.76381 0.89875 0.91034 0.94837 0.90371 0.82793 0.93689 0.89438 0.77452 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.62 36.01 0.35 -0.45 16 2 C -0.02 -0.16 5.91 -104.23 -0.62 -0.77 16 3 C -0.13 -0.72 9.68 -39.64 -0.38 -1.11 16 4 C -0.07 -0.35 10.04 -39.51 -0.40 -0.75 16 5 C -0.16 -1.08 10.01 -39.56 -0.40 -1.47 16 6 C 0.14 1.31 7.29 -38.96 -0.28 1.03 16 7 F -0.13 -1.48 16.83 2.25 0.04 -1.44 16 8 C -0.16 -1.62 5.64 -104.91 -0.59 -2.21 16 9 C 0.57 6.94 5.37 -12.40 -0.07 6.87 16 10 O -0.52 -8.54 17.11 5.30 0.09 -8.45 16 11 N -0.72 -7.20 5.55 -61.30 -0.34 -7.54 16 12 C 0.12 1.37 5.93 -4.04 -0.02 1.35 16 13 C 0.05 0.56 5.80 -3.83 -0.02 0.54 16 14 N -0.67 -10.49 6.13 -115.06 -0.70 -11.20 16 15 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 16 C 0.44 10.35 7.82 -10.99 -0.09 10.27 16 17 O -0.58 -15.89 15.78 5.55 0.09 -15.80 16 18 N -0.56 -14.23 5.29 -10.97 -0.06 -14.29 16 19 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 23 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 29 H 0.07 0.52 7.08 -51.93 -0.37 0.16 16 30 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 31 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 33 H 0.40 2.96 8.46 -40.82 -0.35 2.61 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.35 5.73 8.43 -39.29 -0.33 5.40 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -34.82 371.64 -7.90 -42.72 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -5.52 Total: 11.93 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -2.79 Total: 6.14 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.38 Total: -56.77 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: 0.18 Total: -24.26 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.82 -7.90 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153616545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.142 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds