Wall clock time and date at job start Tue Mar 31 2020 14:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36102 * 120.12969 * 2 1 4 4 C 1.39303 * 121.05201 * 180.02562 * 3 2 1 5 5 C 1.36289 * 120.83441 * 0.04424 * 4 3 2 6 6 C 1.40051 * 119.64241 * 359.97438 * 5 4 3 7 7 C 1.41832 * 121.37381 * 180.02562 * 6 5 4 8 8 C 1.47900 * 121.11123 * 0.25192 * 7 6 5 9 9 O 1.21541 * 120.00685 * 54.72980 * 8 7 6 10 10 N 1.34779 * 119.99728 * 234.73551 * 8 7 6 11 11 C 1.46499 * 119.99915 * 185.51821 * 10 8 7 12 12 C 1.50702 * 109.46980 * 90.00433 * 11 10 8 13 13 H 1.08003 * 119.99889 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00236 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99717 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00174 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47485 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47386 * 119.99977 * 16 14 12 19 19 H 1.48510 * 109.47316 * 239.99442 * 16 14 12 20 20 C 1.46508 * 120.00089 * 5.52007 * 10 8 7 21 21 C 1.53004 * 109.47057 * 94.96102 * 20 10 8 22 22 C 1.47199 * 109.46844 * 179.97438 * 21 20 10 23 23 N 7.14337 * 114.20015 * 233.38500 * 2 1 3 24 24 C 1.38856 * 117.77513 * 179.97438 * 7 6 5 25 25 C 1.39312 * 119.58585 * 359.97438 * 24 7 6 26 26 N 1.30968 * 121.88755 * 0.02562 * 25 24 7 27 27 C 1.33568 * 121.82479 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47181 * 269.94647 * 1 2 3 29 29 H 1.08997 * 109.47452 * 29.94558 * 1 2 3 30 30 H 1.09001 * 109.47024 * 149.94447 * 1 2 3 31 31 H 1.08006 * 119.47449 * 0.02866 * 3 2 1 32 32 H 1.08003 * 119.58084 * 180.02562 * 4 3 2 33 33 H 1.08005 * 120.17781 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.46860 * 209.99783 * 11 10 8 35 35 H 1.08992 * 109.47465 * 329.99978 * 11 10 8 36 36 H 0.97002 * 119.99824 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.46889 * 214.96388 * 20 10 8 38 38 H 1.08997 * 109.46844 * 334.96375 * 20 10 8 39 39 H 1.08994 * 109.46851 * 300.00252 * 21 20 10 40 40 H 1.09000 * 109.46820 * 59.99959 * 21 20 10 41 41 H 1.08005 * 120.20669 * 180.02562 * 24 7 6 42 42 H 1.07998 * 119.06279 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1901 1.1771 0.0000 4 6 3.5830 1.1996 -0.0005 5 6 4.3003 0.0407 -0.0020 6 6 3.6298 -1.1889 -0.0024 7 6 4.3396 -2.4169 -0.0033 8 6 5.8183 -2.4449 0.0016 9 8 6.4346 -1.8512 0.8647 10 7 6.4825 -3.1289 -0.9510 11 6 7.9400 -3.2581 -0.8784 12 6 8.2961 -4.4962 -0.0966 13 1 7.5150 -5.1238 0.3062 14 6 9.6193 -4.8272 0.1053 15 7 10.5705 -4.0627 -0.3848 16 14 10.0607 -6.3615 1.0750 17 1 8.8174 -7.0437 1.5154 18 1 10.8518 -7.2792 0.2164 19 1 10.8642 -5.9812 2.2647 20 6 5.7469 -3.7431 -2.0593 21 6 5.7433 -2.7923 -3.2580 22 6 5.0048 -3.4098 -4.3716 23 7 4.4352 -3.8861 -5.2298 24 6 3.5996 -3.5919 -0.0031 25 6 2.2080 -3.5284 -0.0015 26 7 1.5676 -2.3859 -0.0006 27 6 2.2131 -1.2166 -0.0007 28 1 -0.3633 -0.0010 1.0276 29 1 -0.3634 0.8904 -0.5130 30 1 -0.3633 -0.8895 -0.5147 31 1 1.6436 2.1087 0.0005 32 1 4.1009 2.1473 -0.0001 33 1 5.3799 0.0705 -0.0028 34 1 8.3486 -3.3346 -1.8860 35 1 8.3581 -2.3823 -0.3823 36 1 11.5014 -4.2957 -0.2431 37 1 6.2284 -4.6799 -2.3399 38 1 4.7209 -3.9406 -1.7490 39 1 5.2619 -1.8557 -2.9773 40 1 6.7694 -2.5948 -3.5681 41 1 4.0999 -4.5491 -0.0034 42 1 1.6408 -4.4475 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154034508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:32 Heat of formation + Delta-G solvation = 29.440973 kcal Electronic energy + Delta-G solvation = -26653.343345 eV Core-core repulsion = 22983.701328 eV Total energy + Delta-G solvation = -3669.642017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.21645 -40.51122 -38.23445 -38.06167 -36.82580 -35.23811 -34.69749 -32.37298 -32.27023 -31.59856 -29.32648 -27.78416 -26.34685 -25.50320 -24.59189 -24.41933 -22.38481 -20.29495 -19.35506 -18.82787 -18.37238 -18.23703 -17.85396 -17.49215 -16.78193 -16.26048 -15.85334 -15.80660 -15.55735 -15.37367 -15.07772 -14.97540 -14.65169 -14.38425 -14.31082 -13.86977 -13.76256 -13.68386 -13.58459 -13.27595 -13.05483 -12.97776 -12.75715 -12.61085 -12.56942 -12.49532 -12.20700 -12.18058 -12.00770 -11.68249 -11.37767 -11.11921 -10.59883 -10.37774 -9.77538 -9.62254 -9.08697 -8.19703 -6.31980 -0.82292 -0.20713 0.74472 1.40372 1.43262 1.53116 1.53586 1.75609 1.76011 1.96639 2.09407 2.42852 2.94037 3.04251 3.13147 3.30032 3.44415 3.67459 3.69706 3.86618 3.94742 4.01783 4.10178 4.21012 4.38234 4.40984 4.43702 4.52478 4.70860 4.80602 4.84517 4.89703 4.91750 4.93250 5.04706 5.12502 5.29510 5.32970 5.46698 5.49012 5.51644 5.54338 5.81011 5.91863 6.08383 6.49540 6.54140 6.76322 6.83693 7.15599 7.39543 8.87660 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.003922 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.357312 B = 7136.887480 C = 7826.455108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.072 4.072 3 C -0.101 4.101 4 C -0.099 4.099 5 C -0.124 4.124 6 C -0.081 4.081 7 C -0.072 4.072 8 C 0.555 3.445 9 O -0.569 6.569 10 N -0.582 5.582 11 C 0.258 3.742 12 C -0.542 4.542 13 H 0.058 0.942 14 C 0.014 3.986 15 N -0.924 5.924 16 Si 0.958 3.042 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.286 1.286 20 C 0.104 3.896 21 C -0.038 4.038 22 C 0.244 3.756 23 N -0.479 5.479 24 C -0.141 4.141 25 C 0.132 3.868 26 N -0.470 5.470 27 C 0.109 3.891 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.165 0.835 32 H 0.153 0.847 33 H 0.114 0.886 34 H 0.041 0.959 35 H 0.009 0.991 36 H 0.266 0.734 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.160 0.840 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.715 7.133 -1.899 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.072 4.072 3 C -0.120 4.120 4 C -0.116 4.116 5 C -0.143 4.143 6 C -0.083 4.083 7 C -0.083 4.083 8 C 0.343 3.657 9 O -0.449 6.449 10 N -0.311 5.311 11 C 0.138 3.862 12 C -0.581 4.581 13 H 0.076 0.924 14 C -0.186 4.186 15 N -0.564 5.564 16 Si 0.784 3.216 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.212 1.212 20 C -0.020 4.020 21 C -0.079 4.079 22 C -0.074 4.074 23 N -0.156 5.156 24 C -0.161 4.161 25 C -0.040 4.040 26 N -0.178 5.178 27 C -0.012 4.012 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.183 0.817 32 H 0.171 0.829 33 H 0.133 0.867 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.177 0.823 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -19.945 6.858 -2.768 21.272 hybrid contribution 2.399 -0.702 0.973 2.682 sum -17.546 6.156 -1.795 18.681 Atomic orbital electron populations 1.20692 0.88272 1.03759 1.03071 1.19966 0.97976 0.90336 0.98962 1.21192 0.93813 0.98654 0.98356 1.21286 0.94645 0.98534 0.97180 1.21105 1.00225 0.92208 1.00719 1.18723 0.94229 0.93415 1.01963 1.20416 0.92645 0.94879 1.00383 1.18457 0.86915 0.78658 0.81720 1.90767 1.69783 1.45687 1.38662 1.47999 1.08859 1.51074 1.23195 1.18945 0.74257 0.95811 0.97188 1.21752 0.92240 1.09362 1.34737 0.92380 1.25703 0.96312 0.99933 0.96614 1.70029 1.00398 1.39473 1.46458 0.85503 0.78372 0.79432 0.78333 1.18965 1.19915 1.21241 1.21756 0.98874 0.96406 0.84970 1.19735 1.01195 0.99201 0.87774 1.28952 0.92360 0.92481 0.93593 1.81182 1.11643 1.10383 1.12429 1.22647 0.96099 0.98395 0.98955 1.23452 0.90866 0.97094 0.92605 1.67824 1.40294 0.98005 1.11682 1.18945 0.88712 0.93430 1.00143 0.90521 0.89352 0.91259 0.81724 0.82914 0.86747 0.94087 0.97253 0.92514 0.88505 0.87981 0.86338 0.85599 0.82258 0.78139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 9.80 71.23 0.70 -0.86 16 2 C -0.07 -1.51 5.89 -19.77 -0.12 -1.62 16 3 C -0.10 -1.78 9.58 22.03 0.21 -1.57 16 4 C -0.10 -2.06 9.96 22.07 0.22 -1.84 16 5 C -0.12 -3.51 9.26 22.26 0.21 -3.30 16 6 C -0.08 -2.38 5.76 -21.09 -0.12 -2.50 16 7 C -0.07 -2.21 4.95 -19.68 -0.10 -2.31 16 8 C 0.55 21.42 6.47 86.80 0.56 21.99 16 9 O -0.57 -27.51 15.43 -3.84 -0.06 -27.57 16 10 N -0.58 -21.34 2.46 -829.50 -2.04 -23.38 16 11 C 0.26 12.21 5.23 85.63 0.45 12.65 16 12 C -0.54 -28.38 9.39 25.60 0.24 -28.14 16 13 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 14 C 0.01 0.75 5.46 84.65 0.46 1.21 16 15 N -0.92 -52.35 13.29 21.45 0.28 -52.07 16 16 Si 0.96 42.51 29.54 68.60 2.03 44.54 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 20 C 0.10 2.75 5.22 86.38 0.45 3.20 16 21 C -0.04 -0.83 6.03 28.79 0.17 -0.65 16 22 C 0.24 5.92 15.43 89.45 1.38 7.30 16 23 N -0.48 -14.01 18.53 19.99 0.37 -13.64 16 24 C -0.14 -3.42 7.61 22.68 0.17 -3.25 16 25 C 0.13 2.73 11.14 85.08 0.95 3.68 16 26 N -0.47 -11.48 9.37 -188.73 -1.77 -13.25 16 27 C 0.11 2.87 6.59 40.33 0.27 3.14 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 0.92 8.08 -2.39 -0.02 0.90 16 30 H 0.07 1.20 7.56 -2.39 -0.02 1.18 16 31 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 33 H 0.11 3.74 6.54 -2.91 -0.02 3.72 16 34 H 0.04 1.90 8.07 -2.39 -0.02 1.88 16 35 H 0.01 0.52 7.35 -2.39 -0.02 0.50 16 36 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 37 H 0.10 2.59 8.11 -2.39 -0.02 2.57 16 38 H 0.10 2.32 4.44 -2.39 -0.01 2.30 16 39 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.16 3.40 7.58 -2.91 -0.02 3.38 16 42 H 0.20 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -72.58 366.13 5.97 -66.60 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.05 Total: 11.64 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.10 Total: 7.13 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -3.15 Total: -102.34 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.06 Total: -27.57 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -72.58 5.97 -66.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154034508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.046 kcal (2) G-P(sol) polarization free energy of solvation -72.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds