Wall clock time and date at job start Tue Mar 31 2020 14:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86805 * 119.99945 * 2 1 4 4 H 1.48500 * 109.46658 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47282 * 300.00352 * 3 2 1 6 6 H 1.48504 * 109.46739 * 60.00633 * 3 2 1 7 7 C 1.38942 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00215 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00375 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99858 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00225 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99419 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.47075 * 180.02562 * 12 10 9 14 14 C 1.46897 * 110.99810 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46646 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.46857 * 180.02562 * 15 14 13 17 17 N 1.46502 * 109.47216 * 179.97438 * 16 15 14 18 18 C 1.34773 * 120.00061 * 179.97438 * 17 16 15 19 19 O 1.21568 * 120.00167 * 0.02562 * 18 17 16 20 20 C 1.47733 * 119.99821 * 180.02562 * 18 17 16 21 21 C 1.39646 * 120.11740 * 0.27389 * 20 18 17 22 22 C 1.37838 * 119.88070 * 180.23285 * 21 20 18 23 23 C 1.38658 * 120.11710 * 359.49180 * 22 21 20 24 24 F 1.35093 * 119.88405 * 180.27876 * 23 22 21 25 25 C 1.38657 * 120.23712 * 0.25791 * 23 22 21 26 26 C 1.37840 * 120.11828 * 359.97438 * 25 23 22 27 27 H 0.97003 * 119.99737 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99272 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47139 * 60.00515 * 12 10 9 30 30 H 1.09006 * 109.47493 * 300.00440 * 12 10 9 31 31 H 1.00903 * 110.99766 * 303.95668 * 13 12 10 32 32 H 1.09001 * 109.47272 * 60.00506 * 14 13 12 33 33 H 1.09000 * 109.47484 * 299.99934 * 14 13 12 34 34 H 1.08994 * 109.47444 * 60.00247 * 15 14 13 35 35 H 1.08994 * 109.47009 * 299.99765 * 15 14 13 36 36 H 1.09001 * 109.47274 * 60.00437 * 16 15 14 37 37 H 1.09000 * 109.47271 * 299.99995 * 16 15 14 38 38 H 0.97006 * 119.99574 * 0.02562 * 17 16 15 39 39 H 1.08004 * 120.06390 * 0.02562 * 21 20 18 40 40 H 1.08002 * 119.94593 * 179.77526 * 22 21 20 41 41 H 1.08003 * 119.94100 * 180.02562 * 25 23 22 42 42 H 1.08004 * 120.05787 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8629 0.0000 13 7 2.1983 -5.9795 0.0005 14 6 1.4979 -7.2708 0.0005 15 6 2.5229 -8.4068 0.0004 16 6 1.7935 -9.7517 -0.0003 17 7 2.7748 -10.8395 -0.0010 18 6 2.3595 -12.1217 -0.0012 19 8 1.1707 -12.3756 -0.0012 20 6 3.3492 -13.2186 -0.0013 21 6 4.7154 -12.9297 0.0044 22 6 5.6345 -13.9569 -0.0006 23 6 5.2046 -15.2751 -0.0008 24 9 6.1095 -16.2782 0.0000 25 6 3.8492 -15.5676 -0.0012 26 6 2.9217 -14.5480 -0.0010 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3906 -0.0005 29 1 0.6168 -4.9208 -0.8897 30 1 0.6173 -4.9204 0.8903 31 1 2.8332 -5.9128 -0.7809 32 1 0.8734 -7.3454 -0.8897 33 1 0.8727 -7.3451 0.8903 34 1 3.1478 -8.3325 0.8903 35 1 3.1477 -8.3323 -0.8896 36 1 1.1689 -9.8259 -0.8905 37 1 1.1683 -9.8265 0.8895 38 1 3.7234 -10.6368 -0.0006 39 1 5.0514 -11.9032 0.0095 40 1 6.6914 -13.7346 0.0002 41 1 3.5197 -16.5961 -0.0009 42 1 1.8662 -14.7769 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154169564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:48 Heat of formation + Delta-G solvation = -97.683680 kcal Electronic energy + Delta-G solvation = -24597.531005 eV Core-core repulsion = 20491.607224 eV Total energy + Delta-G solvation = -4105.923781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.50442 -40.61189 -38.66281 -38.31905 -36.60567 -35.00903 -33.87338 -32.23368 -31.63820 -31.24405 -30.64575 -27.22427 -25.18238 -24.07528 -23.60980 -22.88388 -21.79381 -20.85102 -19.26929 -18.67341 -17.92342 -17.77510 -17.10302 -16.43095 -16.21251 -16.09308 -15.76401 -15.48134 -15.43428 -14.67582 -14.57513 -14.38507 -14.29800 -14.10964 -13.73727 -13.51559 -13.46430 -13.20926 -13.03841 -12.65875 -12.09892 -11.89384 -11.86163 -11.63519 -11.49163 -11.45742 -11.12249 -10.98550 -10.38659 -10.35341 -10.23662 -9.79703 -9.54847 -9.53458 -9.26614 -8.49491 -8.10165 -7.97504 -6.43081 -3.84037 0.11813 0.60122 2.29032 2.69775 3.15446 3.21212 3.26112 3.33285 3.57757 3.89107 4.03089 4.07352 4.19843 4.23320 4.27668 4.56847 4.67942 4.76217 4.89693 4.99550 5.14343 5.18281 5.24405 5.28272 5.38087 5.43783 5.45423 5.53872 5.57487 5.66691 5.76681 5.90103 5.95580 5.97816 6.06226 6.17592 6.24975 7.06214 7.16084 7.54121 7.61236 7.78043 8.05097 8.59677 9.16526 9.52885 10.04060 10.74683 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.037536 B = 0.001422 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.776918 B =19680.829089 C =20393.521211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.669 5.669 14 C 0.062 3.938 15 C -0.130 4.130 16 C 0.120 3.880 17 N -0.723 5.723 18 C 0.558 3.442 19 O -0.535 6.535 20 C -0.146 4.146 21 C -0.056 4.056 22 C -0.160 4.160 23 C 0.123 3.877 24 F -0.134 7.134 25 C -0.162 4.162 26 C -0.030 4.030 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.349 0.651 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.401 0.599 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.661 -29.346 -0.880 29.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.168 4.168 16 C -0.004 4.004 17 N -0.375 5.375 18 C 0.345 3.655 19 O -0.413 6.413 20 C -0.149 4.149 21 C -0.075 4.075 22 C -0.179 4.179 23 C 0.104 3.896 24 F -0.113 7.113 25 C -0.180 4.180 26 C -0.049 4.049 27 H 0.081 0.919 28 H 0.226 0.774 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.168 0.832 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.237 0.763 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.597 -29.346 -0.199 29.876 hybrid contribution 0.077 0.781 -0.894 1.189 sum 5.675 -28.565 -1.093 29.144 Atomic orbital electron populations 1.69624 1.05948 1.28073 1.50621 1.25267 0.95636 0.99740 0.97298 0.85795 0.79702 0.81105 0.77708 1.19215 1.20774 1.20726 1.19763 0.93416 0.82232 1.47531 0.87850 1.41875 1.09226 1.04620 1.64299 1.19807 0.88381 0.84736 0.84497 1.90517 1.13770 1.87082 1.55476 1.21675 0.94335 0.90902 1.01311 1.60062 1.18925 0.99901 1.51300 1.21826 0.95304 0.88771 1.00890 1.21754 0.99043 0.92294 1.03730 1.21387 0.91234 0.84858 1.02879 1.45924 1.10813 1.05571 1.75200 1.18129 0.88161 0.82629 0.76539 1.90804 1.16912 1.83947 1.49591 1.20043 0.93406 0.94285 1.07166 1.21208 0.91487 0.99595 0.95215 1.21124 1.01529 0.90775 1.04479 1.18005 0.86763 0.84953 0.99907 1.91536 1.66687 1.59650 1.93404 1.21184 0.90980 1.01279 1.04602 1.21170 1.00791 0.90323 0.92646 0.91909 0.77436 0.93791 0.89524 0.83196 0.95189 0.90710 0.90036 0.91186 0.91134 0.90893 0.76339 0.84375 0.83851 0.83864 0.83463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 9 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 10 C 0.44 10.30 7.82 -10.99 -0.09 10.22 16 11 O -0.58 -15.72 15.78 5.55 0.09 -15.63 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 N -0.67 -10.26 6.13 -115.05 -0.70 -10.96 16 14 C 0.06 0.69 5.69 -3.82 -0.02 0.67 16 15 C -0.13 -1.12 5.59 -26.73 -0.15 -1.27 16 16 C 0.12 1.01 5.67 -4.04 -0.02 0.99 16 17 N -0.72 -5.46 5.51 -61.28 -0.34 -5.80 16 18 C 0.56 5.35 7.77 -12.38 -0.10 5.25 16 19 O -0.53 -7.07 16.34 5.31 0.09 -6.99 16 20 C -0.15 -1.09 5.87 -104.97 -0.62 -1.70 16 21 C -0.06 -0.30 9.54 -39.20 -0.37 -0.67 16 22 C -0.16 -0.87 10.01 -39.57 -0.40 -1.26 16 23 C 0.12 0.81 7.31 -39.27 -0.29 0.52 16 24 F -0.13 -1.00 17.26 2.25 0.04 -0.96 16 25 C -0.16 -0.97 10.01 -39.57 -0.40 -1.37 16 26 C -0.03 -0.21 9.59 -39.20 -0.38 -0.59 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.35 5.46 8.43 -39.29 -0.33 5.12 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.40 1.98 6.50 -40.82 -0.27 1.71 16 39 H 0.14 0.39 6.40 -52.48 -0.34 0.06 16 40 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 42 H 0.15 1.00 7.65 -52.48 -0.40 0.60 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -33.89 370.04 -8.10 -41.98 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -5.39 Total: 11.22 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -3.09 Total: 3.62 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.38 Total: -54.73 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.17 Total: -22.62 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.89 -8.10 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154169564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.700 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds