Wall clock time and date at job start Tue Mar 31 2020 14:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38304 * 120.08571 * 2 1 4 4 C 1.37940 * 120.37168 * 179.97438 * 3 2 1 5 5 C 1.39361 * 120.13359 * 359.97438 * 4 3 2 6 6 C 1.38897 * 118.94900 * 0.02562 * 5 4 3 7 7 C 1.37682 * 120.80265 * 0.02562 * 6 5 4 8 8 C 1.51134 * 106.34319 * 179.97438 * 6 5 4 9 9 H 1.09005 * 110.50535 * 118.78681 * 8 6 5 10 10 N 1.46496 * 110.51147 * 241.35412 * 8 6 5 11 11 C 1.38373 * 119.99971 * 205.00488 * 10 8 6 12 12 C 1.39706 * 119.43023 * 359.72099 * 11 10 8 13 13 C 1.36567 * 119.48841 * 179.76603 * 12 11 10 14 14 C 1.41319 * 118.41221 * 0.50307 * 13 12 11 15 15 C 1.41195 * 120.57047 * 179.72328 * 14 13 12 16 16 H 1.08012 * 120.00072 * 204.90234 * 15 14 13 17 17 C 1.39873 * 120.00392 * 24.90264 * 15 14 13 18 18 N 1.30903 * 119.99584 * 14.68038 * 17 15 14 19 19 Si 1.86797 * 120.00333 * 194.67568 * 17 15 14 20 20 H 1.48503 * 109.47026 * 60.00174 * 19 17 15 21 21 H 1.48500 * 109.47255 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47271 * 300.00413 * 19 17 15 23 23 C 1.40758 * 118.85824 * 359.74334 * 14 13 12 24 24 C 1.50703 * 119.81484 * 180.02562 * 23 14 13 25 25 N 1.31482 * 120.36626 * 0.02562 * 23 14 13 26 26 C 1.51388 * 104.07105 * 0.02562 * 8 6 5 27 27 O 1.21285 * 126.44698 * 179.97438 * 26 8 6 28 28 N 1.34371 * 107.11293 * 359.97438 * 26 8 6 29 29 H 1.08995 * 109.47337 * 90.00000 * 1 2 3 30 30 H 1.09008 * 109.47230 * 210.00122 * 1 2 3 31 31 H 1.09004 * 109.47269 * 330.00016 * 1 2 3 32 32 H 1.08005 * 119.81325 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.93046 * 179.97438 * 4 3 2 34 34 H 1.08003 * 120.03952 * 179.97438 * 7 6 5 35 35 H 0.96997 * 119.99964 * 24.99921 * 10 8 6 36 36 H 1.07989 * 120.25446 * 0.02562 * 12 11 10 37 37 H 1.08003 * 120.79148 * 180.24996 * 13 12 11 38 38 H 0.96999 * 120.00018 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.47025 * 269.98353 * 24 23 14 40 40 H 1.08996 * 109.47042 * 29.98045 * 24 23 14 41 41 H 1.09001 * 109.47086 * 149.97731 * 24 23 14 42 42 H 0.97000 * 123.87988 * 180.26663 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2003 1.1967 0.0000 4 6 3.5796 1.2036 0.0005 5 6 4.2853 0.0018 0.0016 6 6 3.5776 -1.1933 0.0016 7 6 2.2007 -1.1974 0.0000 8 6 4.6088 -2.2982 0.0022 9 1 4.5095 -2.9126 0.8971 10 7 4.4786 -3.1225 -1.2018 11 6 4.9194 -4.4342 -1.1932 12 6 5.4919 -4.9584 -0.0317 13 6 5.9230 -6.2542 -0.0204 14 6 5.7816 -7.0201 -1.1996 15 6 6.2171 -8.3626 -1.2404 16 1 6.4863 -8.8146 -2.1837 17 6 6.2999 -9.1073 -0.0593 18 7 5.7141 -8.6757 1.0289 19 14 7.2463 -10.7176 -0.0347 20 1 8.6635 -10.4645 -0.3993 21 1 7.1827 -11.3085 1.3262 22 1 6.6447 -11.6603 -1.0117 23 6 5.1997 -6.4215 -2.3328 24 6 5.0380 -7.2186 -3.6015 25 7 4.7964 -5.1708 -2.2906 26 6 5.9334 -1.5653 0.0033 27 8 7.0362 -2.0702 0.0044 28 7 5.6577 -0.2502 0.0026 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6586 2.1311 -0.0004 33 1 4.1138 2.1423 0.0001 34 1 1.6629 -2.1340 -0.0004 35 1 4.0834 -2.7489 -2.0049 36 1 5.5891 -4.3449 0.8517 37 1 6.3650 -6.6821 0.8672 38 1 5.7711 -9.1923 1.8479 39 1 5.9273 -7.1006 -4.2206 40 1 4.9045 -8.2718 -3.3544 41 1 4.1651 -6.8600 -4.1472 42 1 6.3349 0.4443 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155111193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:11 Heat of formation + Delta-G solvation = 16.221680 kcal Electronic energy + Delta-G solvation = -26164.509764 eV Core-core repulsion = 22494.294514 eV Total energy + Delta-G solvation = -3670.215249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.68122 -40.45808 -39.64302 -37.24614 -36.78260 -35.40710 -33.15434 -32.65323 -32.34267 -31.28721 -28.84331 -28.22632 -27.15654 -26.09807 -23.36542 -23.21006 -22.72688 -22.07147 -21.31148 -19.14274 -19.02937 -18.34851 -17.83228 -17.54266 -16.86895 -16.44857 -16.15709 -15.79342 -15.52816 -15.43285 -15.01827 -14.82793 -14.67009 -14.58439 -14.46900 -13.70574 -13.60480 -13.46664 -13.42451 -13.27440 -13.15407 -12.89099 -12.80416 -12.70019 -12.60077 -12.23284 -11.88554 -11.76359 -11.59111 -11.55429 -11.16092 -10.44110 -10.09572 -9.95083 -9.91200 -8.93116 -8.68053 -8.44141 -6.13505 0.02800 0.34083 0.85308 1.09703 1.27390 1.41213 1.52049 1.57586 1.89841 2.24353 2.53723 2.80392 2.82400 2.98518 3.31403 3.74597 3.81924 3.97933 4.06758 4.23930 4.30172 4.44534 4.50660 4.55415 4.65889 4.68598 4.79606 4.95829 5.00669 5.04078 5.04958 5.14064 5.20204 5.23038 5.35466 5.38193 5.48067 5.57793 5.62361 5.66693 5.72772 5.83469 5.98571 6.03104 6.37596 6.53789 6.78309 6.86271 6.93023 7.03343 7.79758 8.40641 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.002995 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.330007 B = 9345.163793 C = 9701.262338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.108 4.108 3 C -0.072 4.072 4 C -0.128 4.128 5 C 0.135 3.865 6 C -0.162 4.162 7 C -0.061 4.061 8 C 0.179 3.821 9 H 0.112 0.888 10 N -0.705 5.705 11 C 0.282 3.718 12 C -0.202 4.202 13 C -0.113 4.113 14 C 0.005 3.995 15 C -0.478 4.478 16 H 0.086 0.914 17 C 0.030 3.970 18 N -0.837 5.837 19 Si 0.982 3.018 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.256 1.256 23 C 0.018 3.982 24 C -0.062 4.062 25 N -0.526 5.526 26 C 0.507 3.493 27 O -0.530 6.530 28 N -0.647 5.647 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.166 0.834 33 H 0.157 0.843 34 H 0.125 0.875 35 H 0.402 0.598 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.285 0.715 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.358 19.323 0.831 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.109 4.109 3 C -0.091 4.091 4 C -0.149 4.149 5 C 0.038 3.962 6 C -0.165 4.165 7 C -0.079 4.079 8 C 0.068 3.932 9 H 0.130 0.870 10 N -0.344 5.344 11 C 0.049 3.951 12 C -0.225 4.225 13 C -0.140 4.140 14 C 0.000 4.000 15 C -0.509 4.509 16 H 0.104 0.896 17 C -0.183 4.183 18 N -0.465 5.465 19 Si 0.803 3.197 20 H -0.189 1.189 21 H -0.196 1.196 22 H -0.180 1.180 23 C -0.120 4.120 24 C -0.120 4.120 25 N -0.242 5.242 26 C 0.292 3.708 27 O -0.404 6.404 28 N -0.293 5.293 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.184 0.816 33 H 0.175 0.825 34 H 0.143 0.857 35 H 0.237 0.763 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -9.112 19.198 0.503 21.257 hybrid contribution 1.407 -0.865 0.873 1.869 sum -7.705 18.333 1.376 19.933 Atomic orbital electron populations 1.20794 0.88895 1.03814 1.03143 1.20137 0.97586 0.92028 1.01142 1.21218 0.92578 0.98870 0.96391 1.20714 0.94410 0.95268 1.04458 1.18365 0.82078 0.95678 1.00079 1.19743 0.94417 0.92322 1.10065 1.20340 0.90840 0.99357 0.97401 1.19892 0.90463 0.91181 0.91674 0.87049 1.43121 1.70311 1.07617 1.13356 1.17849 1.00464 0.86603 0.90176 1.20872 1.07090 0.96870 0.97701 1.21325 1.00595 0.92349 0.99750 1.18520 0.94068 0.95149 0.92262 1.19586 1.40334 0.95889 0.95104 0.89623 1.26748 0.93998 1.03242 0.94299 1.69871 1.34338 1.39911 1.02339 0.85241 0.79124 0.76821 0.78467 1.18885 1.19640 1.17966 1.21317 1.02420 0.90461 0.97824 1.20233 1.01033 0.98404 0.92286 1.66385 1.22930 1.07902 1.27008 1.21663 0.91476 0.83539 0.74135 1.90798 1.27868 1.72696 1.49028 1.43554 1.07079 1.08179 1.70439 0.90459 0.91643 0.89452 0.81611 0.82499 0.85732 0.76255 0.87635 0.86756 0.90430 0.92103 0.91268 0.91892 0.73740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.02 71.23 0.71 -0.41 16 2 C -0.11 -1.63 5.89 -19.81 -0.12 -1.75 16 3 C -0.07 -0.84 9.68 22.21 0.21 -0.62 16 4 C -0.13 -1.75 10.07 22.47 0.23 -1.52 16 5 C 0.13 2.82 7.11 38.34 0.27 3.10 16 6 C -0.16 -4.06 5.87 -19.70 -0.12 -4.17 16 7 C -0.06 -1.28 9.70 22.17 0.22 -1.07 16 8 C 0.18 5.90 3.00 43.86 0.13 6.03 16 9 H 0.11 3.91 6.34 -2.38 -0.02 3.89 16 10 N -0.70 -27.28 5.27 -329.77 -1.74 -29.02 16 11 C 0.28 13.69 7.64 133.31 1.02 14.71 16 12 C -0.20 -10.37 9.16 22.23 0.20 -10.16 16 13 C -0.11 -6.40 8.73 22.64 0.20 -6.20 16 14 C 0.00 0.28 5.59 -21.18 -0.12 0.16 16 15 C -0.48 -25.98 8.16 23.39 0.19 -25.79 16 16 H 0.09 4.38 6.84 -2.90 -0.02 4.36 16 17 C 0.03 1.55 5.22 85.23 0.45 1.99 16 18 N -0.84 -44.86 10.83 21.82 0.24 -44.62 16 19 Si 0.98 39.08 29.58 68.60 2.03 41.11 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 23 C 0.02 0.96 6.86 43.23 0.30 1.26 16 24 C -0.06 -2.68 9.58 71.24 0.68 -2.00 16 25 N -0.53 -26.83 10.29 -179.36 -1.85 -28.67 16 26 C 0.51 17.32 8.35 87.94 0.73 18.05 16 27 O -0.53 -23.02 18.03 -3.04 -0.05 -23.07 16 28 N -0.65 -15.44 5.88 -303.22 -1.78 -17.22 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.72 8.09 -2.38 -0.02 0.70 16 31 H 0.09 0.55 8.09 -2.38 -0.02 0.53 16 32 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.40 14.50 8.75 -92.71 -0.81 13.69 16 36 H 0.11 5.04 6.14 -2.92 -0.02 5.03 16 37 H 0.11 6.66 6.17 -2.91 -0.02 6.65 16 38 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 39 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.07 2.94 6.75 -2.39 -0.02 2.93 16 41 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.42 7.67 8.96 -92.71 -0.83 6.83 16 Total: -1.00 -71.70 354.84 1.49 -70.20 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: -0.54 Total: 39.68 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 5.19 Total: -8.39 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -5.13 Total: -119.54 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.05 Total: -23.07 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -71.70 1.49 -70.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155111193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.426 kcal (2) G-P(sol) polarization free energy of solvation -71.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds