Wall clock time and date at job start Tue Mar 31 2020 14:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38304 * 120.08608 * 2 1 4 4 C 1.37934 * 120.37514 * 179.97438 * 3 2 1 5 5 C 1.39369 * 120.13364 * 0.02562 * 4 3 2 6 6 C 1.38898 * 118.94299 * 359.97438 * 5 4 3 7 7 C 1.37678 * 120.80922 * 359.97438 * 6 5 4 8 8 C 1.51131 * 106.34565 * 179.97438 * 6 5 4 9 9 H 1.08998 * 110.51062 * 241.21624 * 8 6 5 10 10 N 1.46498 * 110.51472 * 118.64580 * 8 6 5 11 11 C 1.38088 * 120.00304 * 154.99839 * 10 8 6 12 12 N 1.32266 * 119.90647 * 0.25678 * 11 10 8 13 13 C 1.31966 * 121.86933 * 180.26715 * 12 11 10 14 14 C 1.50692 * 119.28039 * 179.74945 * 13 12 11 15 15 C 1.38691 * 121.44368 * 359.47087 * 13 12 11 16 16 C 1.38010 * 119.62607 * 0.25810 * 15 13 12 17 17 C 1.40996 * 118.28020 * 359.97438 * 16 15 13 18 18 C 1.41029 * 120.70351 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99947 * 154.87074 * 18 17 16 20 20 C 1.39943 * 119.99801 * 334.86696 * 18 17 16 21 21 N 1.30877 * 120.00211 * 343.96024 * 20 18 17 22 22 Si 1.86796 * 119.99912 * 163.95887 * 20 18 17 23 23 H 1.48500 * 109.47504 * 94.76385 * 22 20 18 24 24 H 1.48501 * 109.47118 * 214.76480 * 22 20 18 25 25 H 1.48502 * 109.47149 * 334.76645 * 22 20 18 26 26 C 1.51392 * 104.06596 * 0.02562 * 8 6 5 27 27 O 1.21296 * 126.44302 * 180.02562 * 26 8 6 28 28 N 1.34366 * 107.11749 * 0.02562 * 26 8 6 29 29 H 1.08999 * 109.47313 * 90.00507 * 1 2 3 30 30 H 1.09004 * 109.47038 * 210.00543 * 1 2 3 31 31 H 1.08997 * 109.47413 * 330.00108 * 1 2 3 32 32 H 1.07997 * 119.81207 * 359.96263 * 3 2 1 33 33 H 1.08000 * 119.93714 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.04442 * 180.02562 * 7 6 5 35 35 H 0.97002 * 120.00034 * 335.00824 * 10 8 6 36 36 H 1.09001 * 109.47482 * 269.72844 * 14 13 12 37 37 H 1.09004 * 109.47383 * 149.72900 * 14 13 12 38 38 H 1.09003 * 109.47443 * 29.72959 * 14 13 12 39 39 H 1.07994 * 120.18310 * 180.23580 * 15 13 12 40 40 H 1.07993 * 120.85472 * 179.97438 * 16 15 13 41 41 H 0.96999 * 119.99529 * 179.97438 * 21 20 18 42 42 H 0.96995 * 123.88153 * 180.02562 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1967 0.0000 4 6 3.5796 1.2037 0.0005 5 6 4.2853 0.0019 0.0005 6 6 3.5776 -1.1933 0.0005 7 6 2.2008 -1.1975 0.0011 8 6 4.6087 -2.2982 -0.0001 9 1 4.5095 -2.9126 -0.8949 10 7 4.4785 -3.1226 1.2039 11 6 4.9183 -4.4315 1.1954 12 7 5.4614 -4.9376 0.1007 13 6 5.8899 -6.1847 0.0480 14 6 6.4942 -6.7028 -1.2315 15 6 5.8014 -7.0272 1.1461 16 6 5.2496 -6.5600 2.3217 17 6 4.7918 -5.2270 2.3613 18 6 4.2188 -4.6971 3.5359 19 1 4.2429 -3.6324 3.7157 20 6 3.6190 -5.5508 4.4685 21 7 3.3057 -6.7751 4.1283 22 14 3.2655 -4.9429 6.1991 23 1 1.8671 -4.4490 6.2744 24 1 3.4492 -6.0579 7.1626 25 1 4.1993 -3.8385 6.5362 26 6 5.9334 -1.5653 0.0002 27 8 7.0362 -2.0703 -0.0006 28 7 5.6578 -0.2502 0.0015 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6586 2.1310 -0.0006 33 1 4.1139 2.1423 0.0001 34 1 1.6629 -2.1340 0.0015 35 1 4.0832 -2.7490 2.0071 36 1 5.7116 -7.1380 -1.8530 37 1 7.2391 -7.4640 -0.9994 38 1 6.9692 -5.8813 -1.7679 39 1 6.1619 -8.0431 1.0815 40 1 5.1705 -7.1990 3.1887 41 1 2.8903 -7.3669 4.7749 42 1 6.3350 0.4442 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155111450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:15 Heat of formation + Delta-G solvation = 12.882543 kcal Electronic energy + Delta-G solvation = -26705.552443 eV Core-core repulsion = 23035.192398 eV Total energy + Delta-G solvation = -3670.360045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.57627 -40.36797 -39.56904 -37.11585 -36.35831 -35.93928 -33.04253 -32.43177 -32.28520 -30.94805 -29.54210 -28.09755 -27.13016 -25.69319 -23.40377 -22.94152 -22.66367 -21.97504 -21.64861 -19.16392 -18.96653 -18.05963 -17.76605 -17.59152 -16.78287 -16.36125 -16.15064 -15.64551 -15.57959 -15.42886 -14.97194 -14.79969 -14.62059 -14.55318 -14.25946 -13.88906 -13.59111 -13.51471 -13.37733 -13.18491 -13.09353 -12.90755 -12.88777 -12.68733 -12.54331 -12.19273 -11.84218 -11.74064 -11.63211 -11.53385 -11.09869 -10.61230 -10.05502 -9.83697 -9.77613 -8.89262 -8.68145 -8.37613 -6.16297 0.08763 0.36946 0.88947 1.17204 1.36632 1.38832 1.48365 1.53722 1.96231 2.21063 2.66266 2.79800 2.90119 3.08080 3.43147 3.80426 3.85850 4.05535 4.12429 4.28697 4.32544 4.46808 4.50155 4.58267 4.71523 4.80665 4.89782 4.96016 4.97860 5.02274 5.05831 5.14221 5.17212 5.23477 5.25190 5.40095 5.41022 5.61407 5.68813 5.73243 5.79407 5.87152 6.06708 6.11339 6.33335 6.66350 6.72576 6.87248 6.94590 7.06274 7.89435 8.37741 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009532 B = 0.004996 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.652742 B = 5603.405496 C = 7325.559334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.108 4.108 3 C -0.073 4.073 4 C -0.128 4.128 5 C 0.134 3.866 6 C -0.164 4.164 7 C -0.063 4.063 8 C 0.181 3.819 9 H 0.107 0.893 10 N -0.697 5.697 11 C 0.292 3.708 12 N -0.530 5.530 13 C 0.019 3.981 14 C -0.068 4.068 15 C -0.193 4.193 16 C -0.143 4.143 17 C 0.003 3.997 18 C -0.480 4.480 19 H 0.075 0.925 20 C 0.037 3.963 21 N -0.829 5.829 22 Si 0.978 3.022 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.263 1.263 26 C 0.511 3.489 27 O -0.528 6.528 28 N -0.650 5.650 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.119 0.881 35 H 0.409 0.591 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.286 0.714 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 15.638 -5.937 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.109 4.109 3 C -0.092 4.092 4 C -0.149 4.149 5 C 0.037 3.963 6 C -0.168 4.168 7 C -0.082 4.082 8 C 0.071 3.929 9 H 0.125 0.875 10 N -0.337 5.337 11 C 0.055 3.945 12 N -0.247 5.247 13 C -0.116 4.116 14 C -0.125 4.125 15 C -0.215 4.215 16 C -0.170 4.170 17 C -0.004 4.004 18 C -0.511 4.511 19 H 0.093 0.907 20 C -0.177 4.177 21 N -0.455 5.455 22 Si 0.799 3.201 23 H -0.185 1.185 24 H -0.194 1.194 25 H -0.186 1.186 26 C 0.296 3.704 27 O -0.402 6.402 28 N -0.295 5.295 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.185 0.815 33 H 0.176 0.824 34 H 0.137 0.863 35 H 0.247 0.753 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.097 0.903 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.668 15.508 -6.769 17.845 hybrid contribution 0.349 -0.573 1.829 1.948 sum -5.319 14.935 -4.940 16.606 Atomic orbital electron populations 1.20786 0.88908 1.03642 1.03216 1.20129 0.97577 0.91992 1.01243 1.21198 0.92577 0.98768 0.96622 1.20710 0.94398 0.95184 1.04565 1.18380 0.82171 0.95638 1.00091 1.19879 0.94536 0.92833 1.09532 1.20322 0.90980 0.99245 0.97694 1.19752 0.89925 0.90939 0.92250 0.87539 1.43322 1.69149 1.07947 1.13249 1.18625 0.98958 0.87017 0.89885 1.66418 1.15530 1.15160 1.27605 1.20764 1.04621 0.89160 0.97076 1.20332 0.99630 1.00011 0.92576 1.21507 1.05276 1.00113 0.94642 1.21386 1.01122 0.96727 0.97729 1.18212 0.96161 0.93359 0.92650 1.19313 1.33705 0.94946 1.03123 0.90659 1.26612 0.92791 0.94494 1.03801 1.69874 1.30835 1.07875 1.36955 0.85252 0.79407 0.78963 0.76476 1.18473 1.19417 1.18648 1.21637 0.91602 0.83276 0.73901 1.90748 1.27821 1.72689 1.48945 1.43572 1.06960 1.08213 1.70748 0.90096 0.92056 0.89468 0.81494 0.82410 0.86260 0.75337 0.91423 0.90485 0.92732 0.86256 0.86904 0.90300 0.73909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.02 71.23 0.71 -0.76 16 2 C -0.11 -2.04 5.89 -19.81 -0.12 -2.16 16 3 C -0.07 -1.08 9.68 22.21 0.21 -0.87 16 4 C -0.13 -2.16 10.07 22.47 0.23 -1.94 16 5 C 0.13 3.33 7.11 38.35 0.27 3.61 16 6 C -0.16 -4.90 5.87 -19.70 -0.12 -5.01 16 7 C -0.06 -1.64 9.70 22.17 0.22 -1.43 16 8 C 0.18 6.96 3.35 43.86 0.15 7.10 16 9 H 0.11 4.45 7.51 -2.39 -0.02 4.44 16 10 N -0.70 -31.06 5.17 -328.58 -1.70 -32.76 16 11 C 0.29 15.29 7.52 134.06 1.01 16.30 16 12 N -0.53 -27.30 9.06 -179.57 -1.63 -28.93 16 13 C 0.02 0.91 6.79 42.64 0.29 1.20 16 14 C -0.07 -2.55 10.15 71.23 0.72 -1.83 16 15 C -0.19 -9.58 9.69 22.32 0.22 -9.36 16 16 C -0.14 -7.85 8.79 22.89 0.20 -7.65 16 17 C 0.00 0.17 5.60 -21.06 -0.12 0.05 16 18 C -0.48 -25.46 8.52 23.37 0.20 -25.26 16 19 H 0.08 3.80 6.69 -2.91 -0.02 3.78 16 20 C 0.04 1.86 5.20 85.25 0.44 2.30 16 21 N -0.83 -43.21 10.94 21.83 0.24 -42.97 16 22 Si 0.98 38.01 29.59 68.60 2.03 40.04 16 23 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 24 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 26 C 0.51 19.64 8.35 87.94 0.73 20.38 16 27 O -0.53 -24.87 18.03 -3.08 -0.06 -24.93 16 28 N -0.65 -17.92 5.88 -303.21 -1.78 -19.71 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.94 8.09 -2.39 -0.02 0.92 16 31 H 0.09 0.82 8.09 -2.39 -0.02 0.80 16 32 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.12 3.27 8.06 -2.91 -0.02 3.24 16 35 H 0.41 17.72 6.84 -92.71 -0.63 17.09 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.08 2.49 8.07 -2.39 -0.02 2.48 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.12 5.15 8.06 -2.91 -0.02 5.12 16 40 H 0.11 6.36 6.25 -2.91 -0.02 6.34 16 41 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 42 H 0.42 8.99 8.96 -92.71 -0.83 8.16 16 Total: -1.00 -71.12 357.71 1.98 -69.14 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: -0.38 Total: 45.45 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.25 Total: -5.34 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -4.87 Total: -124.37 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.06 Total: -24.93 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -71.12 1.98 -69.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155111450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.027 kcal (2) G-P(sol) polarization free energy of solvation -71.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds