Wall clock time and date at job start Tue Mar 31 2020 14:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38301 * 120.08623 * 2 1 4 4 C 1.37934 * 120.37344 * 180.02562 * 3 2 1 5 5 C 1.39370 * 120.13211 * 359.97438 * 4 3 2 6 6 C 1.38897 * 118.94668 * 0.02562 * 5 4 3 7 7 C 1.37685 * 120.80492 * 0.02562 * 6 5 4 8 8 C 1.51129 * 106.34215 * 179.97438 * 6 5 4 9 9 H 1.09006 * 110.62618 * 118.70227 * 8 6 5 10 10 N 1.46497 * 110.51124 * 241.35155 * 8 6 5 11 11 C 1.38089 * 120.00460 * 201.10064 * 10 8 6 12 12 N 1.32276 * 119.89901 * 0.25078 * 11 10 8 13 13 C 1.31976 * 121.86133 * 180.24762 * 12 11 10 14 14 C 1.50698 * 119.27462 * 179.74682 * 13 12 11 15 15 C 1.38687 * 121.44617 * 359.76036 * 13 12 11 16 16 C 1.38003 * 119.62726 * 359.97438 * 15 13 12 17 17 C 1.41002 * 118.28579 * 0.02562 * 16 15 13 18 18 C 1.41015 * 120.70756 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99826 * 149.94999 * 18 17 16 20 20 C 1.39945 * 119.99988 * 330.22783 * 18 17 16 21 21 N 1.30865 * 119.99933 * 161.90458 * 20 18 17 22 22 Si 1.86800 * 119.99872 * 341.90100 * 20 18 17 23 23 H 1.48496 * 109.47138 * 95.39337 * 22 20 18 24 24 H 1.48502 * 109.47110 * 215.39152 * 22 20 18 25 25 H 1.48499 * 109.47351 * 335.39212 * 22 20 18 26 26 C 1.51389 * 104.06916 * 0.02562 * 8 6 5 27 27 O 1.21289 * 126.44368 * 180.02562 * 26 8 6 28 28 N 1.34366 * 107.11408 * 359.97438 * 26 8 6 29 29 H 1.09006 * 109.46617 * 89.99795 * 1 2 3 30 30 H 1.08998 * 109.47547 * 209.99885 * 1 2 3 31 31 H 1.08998 * 109.47111 * 330.00311 * 1 2 3 32 32 H 1.07999 * 119.81790 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.93758 * 180.02562 * 4 3 2 34 34 H 1.08000 * 120.04104 * 179.97438 * 7 6 5 35 35 H 0.97001 * 119.99824 * 21.10247 * 10 8 6 36 36 H 1.08999 * 109.46686 * 270.01441 * 14 13 12 37 37 H 1.09000 * 109.47654 * 30.01720 * 14 13 12 38 38 H 1.08997 * 109.47236 * 150.01927 * 14 13 12 39 39 H 1.07997 * 120.18164 * 179.97438 * 15 13 12 40 40 H 1.08005 * 120.85831 * 179.97438 * 16 15 13 41 41 H 0.97001 * 119.99610 * 180.02562 * 21 20 18 42 42 H 0.97005 * 123.87611 * 179.97438 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1967 0.0000 4 6 3.5797 1.2036 -0.0005 5 6 4.2853 0.0017 -0.0005 6 6 3.5776 -1.1934 -0.0005 7 6 2.2007 -1.1975 -0.0011 8 6 4.6087 -2.2982 -0.0012 9 1 4.5129 -2.9135 0.8935 10 7 4.4776 -3.1221 -1.2054 11 6 4.9898 -4.4043 -1.2241 12 7 5.5941 -4.8886 -0.1517 13 6 6.1017 -6.1066 -0.1285 14 6 6.7830 -6.5973 1.1229 15 6 6.0220 -6.9448 -1.2305 16 6 5.3995 -6.5029 -2.3802 17 6 4.8620 -5.1994 -2.3901 18 6 4.2155 -4.6958 -3.5377 19 1 3.4210 -3.9714 -3.4358 20 6 4.5995 -5.1390 -4.8084 21 7 3.8016 -4.9650 -5.8309 22 14 6.2512 -5.9789 -5.0448 23 1 6.0709 -7.4516 -4.9837 24 1 6.8127 -5.6035 -6.3673 25 1 7.1832 -5.5494 -3.9714 26 6 5.9334 -1.5653 -0.0009 27 8 7.0362 -2.0703 -0.0016 28 7 5.6577 -0.2503 -0.0007 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6588 2.1311 0.0004 33 1 4.1139 2.1421 -0.0001 34 1 1.6629 -2.1340 -0.0015 35 1 4.0310 -2.7668 -1.9898 36 1 7.8434 -6.3484 1.0806 37 1 6.3322 -6.1201 1.9931 38 1 6.6664 -7.6782 1.2002 39 1 6.4449 -7.9377 -1.1892 40 1 5.3265 -7.1388 -3.2501 41 1 4.0677 -5.2725 -6.7115 42 1 6.3350 0.4442 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155111451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:19 Heat of formation + Delta-G solvation = 12.784858 kcal Electronic energy + Delta-G solvation = -26794.029377 eV Core-core repulsion = 23123.665096 eV Total energy + Delta-G solvation = -3670.364281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.59890 -40.58862 -39.57796 -37.13285 -36.45766 -35.87465 -33.49791 -32.78934 -32.31808 -31.02482 -29.65933 -28.21324 -27.13707 -25.50698 -23.70504 -23.03860 -22.70596 -21.97410 -21.77693 -19.33104 -18.98485 -18.26558 -17.76605 -17.65395 -16.99060 -16.46756 -16.19970 -15.71407 -15.49253 -15.38262 -15.21427 -14.95382 -14.75093 -14.61471 -14.56676 -14.08314 -13.72807 -13.61753 -13.49348 -13.36891 -13.15976 -12.94392 -12.88430 -12.70130 -12.58656 -12.13741 -11.92001 -11.76058 -11.69740 -11.54103 -11.29295 -10.69918 -10.06089 -10.02909 -9.81117 -8.90369 -8.88974 -8.59183 -6.31566 0.07131 0.35701 0.68002 0.87816 1.22121 1.32019 1.36185 1.44425 1.95521 2.09731 2.59258 2.65070 2.85395 3.05881 3.36926 3.59006 3.82512 3.98714 4.07096 4.22313 4.26582 4.31522 4.46095 4.55544 4.59664 4.66394 4.80428 4.83628 4.95520 4.95870 4.98195 5.04538 5.16063 5.19586 5.24252 5.28540 5.39188 5.46266 5.61274 5.67708 5.68796 5.78222 5.97666 6.05406 6.13577 6.36545 6.56720 6.75581 6.88027 6.93508 7.74140 8.18215 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.004600 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.450793 B = 6084.852483 C = 7150.396315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.109 4.109 3 C -0.074 4.074 4 C -0.130 4.130 5 C 0.134 3.866 6 C -0.166 4.166 7 C -0.063 4.063 8 C 0.182 3.818 9 H 0.112 0.888 10 N -0.697 5.697 11 C 0.315 3.685 12 N -0.523 5.523 13 C 0.034 3.966 14 C -0.072 4.072 15 C -0.178 4.178 16 C -0.200 4.200 17 C -0.011 4.011 18 C -0.464 4.464 19 H 0.071 0.929 20 C 0.057 3.943 21 N -0.844 5.844 22 Si 0.952 3.048 23 H -0.255 1.255 24 H -0.279 1.279 25 H -0.272 1.272 26 C 0.510 3.490 27 O -0.525 6.525 28 N -0.651 5.651 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.167 0.833 33 H 0.157 0.843 34 H 0.124 0.876 35 H 0.411 0.589 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.135 0.865 40 H 0.109 0.891 41 H 0.292 0.708 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 11.804 10.896 16.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.110 4.110 3 C -0.092 4.092 4 C -0.150 4.150 5 C 0.037 3.963 6 C -0.169 4.169 7 C -0.082 4.082 8 C 0.072 3.928 9 H 0.130 0.870 10 N -0.336 5.336 11 C 0.076 3.924 12 N -0.241 5.241 13 C -0.100 4.100 14 C -0.129 4.129 15 C -0.200 4.200 16 C -0.226 4.226 17 C -0.018 4.018 18 C -0.495 4.495 19 H 0.089 0.911 20 C -0.158 4.158 21 N -0.471 5.471 22 Si 0.778 3.222 23 H -0.180 1.180 24 H -0.205 1.205 25 H -0.197 1.197 26 C 0.295 3.705 27 O -0.398 6.398 28 N -0.296 5.296 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.184 0.816 33 H 0.175 0.825 34 H 0.142 0.858 35 H 0.249 0.751 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.153 0.847 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -3.878 11.900 11.539 17.023 hybrid contribution 0.922 -0.659 -1.690 2.034 sum -2.956 11.241 9.849 15.235 Atomic orbital electron populations 1.20789 0.88853 1.03904 1.03006 1.20141 0.97624 0.92037 1.01222 1.21207 0.92580 0.98854 0.96552 1.20710 0.94438 0.95231 1.04639 1.18386 0.82214 0.95708 0.99969 1.19851 0.94537 0.92749 1.09772 1.20344 0.90899 0.99353 0.97566 1.19791 0.90002 0.90968 0.91997 0.87018 1.43497 1.64536 1.10572 1.14963 1.18526 0.96479 0.86401 0.90976 1.66545 1.14140 1.16029 1.27403 1.20922 1.02133 0.89747 0.97213 1.20396 0.98840 1.01032 0.92639 1.21489 1.03451 1.01123 0.93894 1.21269 1.07206 0.95242 0.98859 1.18175 0.97212 0.92703 0.93703 1.18999 1.17285 1.23475 0.89741 0.91128 1.26493 1.00424 0.93650 0.95240 1.69706 1.36515 1.38769 1.02092 0.85669 0.79775 0.79621 0.77183 1.18021 1.20531 1.19678 1.21611 0.91635 0.83240 0.73983 1.90752 1.27727 1.72605 1.48741 1.43598 1.06959 1.08313 1.70777 0.90803 0.91493 0.89265 0.81567 0.82517 0.85825 0.75110 0.91935 0.91972 0.89578 0.84726 0.87344 0.89764 0.73944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.02 71.24 0.71 -0.75 16 2 C -0.11 -2.05 5.89 -19.81 -0.12 -2.17 16 3 C -0.07 -1.12 9.68 22.21 0.21 -0.90 16 4 C -0.13 -2.25 10.07 22.47 0.23 -2.02 16 5 C 0.13 3.35 7.11 38.35 0.27 3.62 16 6 C -0.17 -4.84 5.85 -19.70 -0.12 -4.95 16 7 C -0.06 -1.58 9.70 22.18 0.22 -1.36 16 8 C 0.18 6.74 3.28 43.85 0.14 6.88 16 9 H 0.11 4.35 7.62 -2.38 -0.02 4.34 16 10 N -0.70 -30.30 5.20 -328.57 -1.71 -32.01 16 11 C 0.32 15.66 7.51 134.05 1.01 16.67 16 12 N -0.52 -25.15 9.12 -179.56 -1.64 -26.78 16 13 C 0.03 1.50 6.79 42.64 0.29 1.79 16 14 C -0.07 -2.39 10.15 71.24 0.72 -1.67 16 15 C -0.18 -7.84 9.69 22.32 0.22 -7.62 16 16 C -0.20 -9.89 7.28 22.89 0.17 -9.73 16 17 C -0.01 -0.56 5.13 -21.06 -0.11 -0.67 16 18 C -0.46 -25.35 8.93 23.36 0.21 -25.14 16 19 H 0.07 3.98 7.04 -2.91 -0.02 3.96 16 20 C 0.06 3.03 5.42 85.25 0.46 3.49 16 21 N -0.84 -45.42 13.93 21.83 0.30 -45.12 16 22 Si 0.95 44.29 24.53 68.60 1.68 45.97 16 23 H -0.25 -11.10 6.70 99.48 0.67 -10.43 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.27 -13.68 6.85 99.48 0.68 -13.00 16 26 C 0.51 19.34 8.35 87.94 0.73 20.08 16 27 O -0.52 -24.30 18.03 -3.06 -0.06 -24.35 16 28 N -0.65 -18.04 5.88 -303.22 -1.78 -19.82 16 29 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.07 0.91 8.09 -2.39 -0.02 0.90 16 31 H 0.09 0.78 8.09 -2.39 -0.02 0.77 16 32 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.41 17.98 6.90 -92.71 -0.64 17.35 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.09 2.34 8.07 -2.39 -0.02 2.32 16 39 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 40 H 0.11 5.26 4.81 -2.91 -0.01 5.25 16 41 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 42 H 0.42 9.13 8.96 -92.70 -0.83 8.30 16 Total: -1.00 -70.47 352.74 1.61 -68.86 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.45 Total: 37.71 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 5.25 Total: -4.45 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -4.83 Total: -123.74 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.06 Total: -24.35 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.68 Total: 45.97 kcal Total: -70.47 1.61 -68.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155111451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.646 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds