Wall clock time and date at job start Tue Mar 31 2020 13:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40317 * 119.93663 * 80.55633 * 3 2 1 5 5 C 1.36272 * 120.64594 * 179.97438 * 4 3 2 6 6 C 1.39439 * 120.27453 * 359.97438 * 5 4 3 7 7 N 1.37301 * 132.90529 * 180.02562 * 6 5 4 8 8 H 0.96996 * 125.56394 * 359.93478 * 7 6 5 9 9 C 1.38158 * 108.87517 * 179.97438 * 7 6 5 10 10 C 1.47062 * 125.41615 * 179.97438 * 9 7 6 11 11 O 1.21647 * 120.00001 * 180.02562 * 10 9 7 12 12 N 1.34766 * 120.00180 * 0.02925 * 10 9 7 13 13 C 1.46497 * 120.00374 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.41062 * 35.14797 * 13 12 10 15 15 C 1.52962 * 109.41683 * 155.00220 * 13 12 10 16 16 C 1.53226 * 109.40773 * 183.70717 * 15 13 12 17 17 C 1.51273 * 108.53553 * 305.37554 * 16 15 13 18 18 C 1.37877 * 120.85000 * 231.32541 * 17 16 15 19 19 N 1.31518 * 119.99747 * 359.97438 * 18 17 16 20 20 Si 1.86794 * 120.00196 * 179.97438 * 18 17 16 21 21 H 1.48507 * 109.47165 * 90.00070 * 20 18 17 22 22 H 1.48502 * 109.47346 * 210.00053 * 20 18 17 23 23 H 1.48502 * 109.47142 * 330.00051 * 20 18 17 24 24 C 1.51267 * 118.30211 * 51.34450 * 17 16 15 25 25 C 1.52958 * 109.41835 * 275.35863 * 13 12 10 26 26 C 1.35832 * 109.16691 * 359.97438 * 9 7 6 27 27 C 1.41004 * 119.75380 * 0.02603 * 6 5 4 28 28 C 1.38992 * 119.93173 * 260.27662 * 3 2 1 29 29 H 1.08003 * 119.68225 * 359.97109 * 4 3 2 30 30 H 1.08002 * 119.85640 * 180.02562 * 5 4 3 31 31 H 0.97003 * 120.00047 * 0.02562 * 12 10 9 32 32 H 1.08999 * 109.48236 * 303.68865 * 15 13 12 33 33 H 1.09005 * 109.48179 * 63.71218 * 15 13 12 34 34 H 1.08999 * 109.62817 * 65.08598 * 16 15 13 35 35 H 1.09000 * 109.62679 * 185.66192 * 16 15 13 36 36 H 0.97002 * 119.99572 * 179.97438 * 19 18 17 37 37 H 1.09003 * 109.62377 * 68.37117 * 24 17 16 38 38 H 1.09003 * 109.62865 * 188.93730 * 24 17 16 39 39 H 1.09007 * 109.48205 * 296.27585 * 25 13 12 40 40 H 1.09003 * 109.47917 * 56.30986 * 25 13 12 41 41 H 1.08007 * 126.16949 * 180.02562 * 26 9 7 42 42 H 1.07997 * 120.27949 * 0.02595 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 -0.1986 -1.1995 5 6 4.6309 -0.2002 -1.2162 6 6 5.3487 -0.0027 -0.0371 7 7 6.6920 0.0456 0.2424 8 1 7.4070 -0.0622 -0.4041 9 6 6.8592 0.2720 1.5950 10 6 8.1520 0.3885 2.2863 11 8 8.1845 0.5887 3.4857 12 7 9.3007 0.2736 1.5909 13 6 10.5886 0.3891 2.2795 14 1 10.5068 -0.0451 3.2760 15 6 11.6592 -0.3604 1.4847 16 6 12.9853 -0.3181 2.2512 17 6 13.3246 1.1264 2.5458 18 6 14.5630 1.6411 2.2260 19 7 15.4674 0.8736 1.6578 20 14 14.9565 3.4285 2.5997 21 1 15.5404 3.5327 3.9612 22 1 15.9312 3.9397 1.6027 23 1 13.7108 4.2341 2.5323 24 6 12.2705 1.9915 3.2005 25 6 10.9704 1.8654 2.3996 26 6 5.6396 0.3699 2.1849 27 6 4.6593 0.1989 1.1763 28 6 3.2614 0.2044 1.1872 29 1 2.7221 -0.3521 -2.1185 30 1 5.1570 -0.3543 -2.1467 31 1 9.2748 0.1144 0.6344 32 1 11.3513 -1.3970 1.3479 33 1 11.7867 0.1124 0.5109 34 1 12.8852 -0.8687 3.1866 35 1 13.7736 -0.7628 1.6439 36 1 16.3385 1.2358 1.4325 37 1 12.1044 1.6547 4.2238 38 1 12.5996 3.0307 3.2031 39 1 11.1143 2.2858 1.4042 40 1 10.1743 2.4063 2.9112 41 1 5.4510 0.5456 3.2338 42 1 2.7248 0.3620 2.1111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156461601.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:29 Heat of formation + Delta-G solvation = 16.902434 kcal Electronic energy + Delta-G solvation = -25372.877767 eV Core-core repulsion = 21702.692038 eV Total energy + Delta-G solvation = -3670.185729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.68975 -40.73775 -38.79204 -38.30503 -36.84601 -35.47876 -33.54475 -33.26992 -31.51237 -31.08125 -30.24059 -29.00064 -25.64549 -24.20230 -23.65295 -23.30045 -22.44385 -21.36612 -21.09634 -19.61879 -19.38989 -18.28882 -17.80471 -17.10431 -16.45959 -16.31916 -16.13524 -15.53486 -15.37868 -15.12938 -14.92306 -14.74822 -14.68615 -14.67779 -14.49266 -14.18036 -14.01131 -13.93613 -13.69326 -13.46559 -13.19570 -12.79028 -12.68978 -12.58973 -12.36739 -11.96806 -11.96027 -11.84449 -11.42351 -11.32791 -11.00019 -10.85932 -10.69141 -10.54107 -10.01039 -9.32340 -8.87184 -8.16659 -6.10679 -0.32353 0.04990 1.06804 1.39225 1.43106 1.49948 1.69030 1.81724 2.01595 2.08928 2.28888 2.41354 2.93693 2.97285 3.11430 3.63514 3.69696 4.00115 4.04445 4.13703 4.18964 4.31230 4.42288 4.48482 4.60223 4.71445 4.81912 4.85027 4.96612 5.02764 5.06929 5.07922 5.19292 5.23177 5.25891 5.34728 5.43303 5.54373 5.56561 5.57263 5.66475 5.76423 5.82466 5.88189 6.34347 6.36269 6.53517 6.54820 6.95222 7.10842 7.47605 8.93487 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.032566 B = 0.002196 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.586082 B =12749.790492 C =12931.371436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.287 3.713 3 C -0.070 4.070 4 C -0.039 4.039 5 C -0.120 4.120 6 C 0.138 3.862 7 N -0.559 5.559 8 H 0.435 0.565 9 C 0.012 3.988 10 C 0.578 3.422 11 O -0.565 6.565 12 N -0.706 5.706 13 C 0.167 3.833 14 H 0.061 0.939 15 C -0.100 4.100 16 C 0.007 3.993 17 C -0.497 4.497 18 C 0.025 3.975 19 N -0.927 5.927 20 Si 0.936 3.064 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.251 1.251 24 C -0.023 4.023 25 C -0.106 4.106 26 C -0.103 4.103 27 C -0.142 4.142 28 C 0.006 3.994 29 H 0.161 0.839 30 H 0.164 0.836 31 H 0.409 0.591 32 H 0.061 0.939 33 H 0.060 0.940 34 H -0.002 1.002 35 H 0.034 0.966 36 H 0.263 0.737 37 H 0.014 0.986 38 H 0.036 0.964 39 H 0.057 0.943 40 H 0.041 0.959 41 H 0.158 0.842 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.810 -2.297 -9.025 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.027 4.027 3 C -0.075 4.075 4 C -0.061 4.061 5 C -0.140 4.140 6 C 0.024 3.976 7 N -0.164 5.164 8 H 0.276 0.724 9 C -0.098 4.098 10 C 0.365 3.635 11 O -0.443 6.443 12 N -0.356 5.356 13 C 0.063 3.937 14 H 0.079 0.921 15 C -0.138 4.138 16 C -0.031 4.031 17 C -0.516 4.516 18 C -0.173 4.173 19 N -0.567 5.567 20 Si 0.763 3.237 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.175 1.175 24 C -0.061 4.061 25 C -0.145 4.145 26 C -0.130 4.130 27 C -0.146 4.146 28 C -0.016 4.016 29 H 0.178 0.822 30 H 0.182 0.818 31 H 0.245 0.755 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.016 0.984 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.176 0.824 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -22.145 -2.173 -8.298 23.748 hybrid contribution 1.641 0.700 -0.164 1.791 sum -20.505 -1.473 -8.462 22.231 Atomic orbital electron populations 1.81294 1.13535 1.11552 1.08882 1.25818 0.92629 0.91922 0.92325 1.15712 0.83181 1.12844 0.95738 1.20792 0.93186 0.95227 0.96900 1.20006 0.93143 1.04831 0.96052 1.18776 0.82970 0.99761 0.96052 1.41900 1.06758 1.60704 1.07050 0.72408 1.19901 0.94094 1.11727 0.84062 1.17514 0.83038 0.76579 0.86320 1.90845 1.87235 1.50785 1.15465 1.46001 1.05274 1.72010 1.12309 1.20710 0.80946 0.96150 0.95932 0.92085 1.21697 0.94991 0.98263 0.98876 1.19313 0.93609 0.95274 0.94928 1.20587 0.97084 0.96411 1.37547 1.25543 0.95902 1.00975 0.94914 1.69951 1.05996 1.37501 1.43268 0.85884 0.78087 0.82006 0.77768 1.20531 1.21745 1.17515 1.19806 0.93809 0.96832 0.95616 1.21775 0.97037 0.95426 1.00262 1.21094 0.89369 1.02458 1.00104 1.18048 0.93316 1.10106 0.93162 1.20816 0.91263 0.91874 0.97615 0.82153 0.81814 0.75498 0.92028 0.92114 0.98402 0.94699 0.92798 0.96746 0.94573 0.92428 0.93999 0.82447 0.83413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.37 18.54 19.00 0.35 -10.01 16 2 C 0.29 4.60 15.31 88.33 1.35 5.95 16 3 C -0.07 -0.80 5.73 -21.35 -0.12 -0.93 16 4 C -0.04 -0.29 9.67 22.32 0.22 -0.08 16 5 C -0.12 -0.85 10.00 22.10 0.22 -0.63 16 6 C 0.14 1.71 7.25 39.25 0.28 1.99 16 7 N -0.56 -7.18 6.06 -177.05 -1.07 -8.26 16 8 H 0.43 3.06 8.11 -92.71 -0.75 2.31 16 9 C 0.01 0.24 6.96 39.90 0.28 0.51 16 10 C 0.58 15.91 7.76 86.56 0.67 16.58 16 11 O -0.56 -20.52 16.50 -4.18 -0.07 -20.59 16 12 N -0.71 -17.98 5.07 -446.29 -2.26 -20.24 16 13 C 0.17 5.74 2.35 44.97 0.11 5.84 16 14 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 15 C -0.10 -3.59 5.40 30.66 0.17 -3.42 16 16 C 0.01 0.32 5.97 30.11 0.18 0.50 16 17 C -0.50 -25.01 5.51 -16.17 -0.09 -25.10 16 18 C 0.03 1.34 5.46 84.65 0.46 1.80 16 19 N -0.93 -52.27 12.73 21.45 0.27 -52.00 16 20 Si 0.94 41.93 27.53 68.60 1.89 43.82 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 23 H -0.25 -10.57 6.11 99.48 0.61 -9.96 16 24 C -0.02 -1.01 5.59 30.10 0.17 -0.84 16 25 C -0.11 -4.03 5.50 30.66 0.17 -3.86 16 26 C -0.10 -2.00 10.54 22.56 0.24 -1.77 16 27 C -0.14 -2.17 6.15 -21.37 -0.13 -2.30 16 28 C 0.01 0.07 9.81 22.83 0.22 0.30 16 29 H 0.16 0.44 8.06 -2.91 -0.02 0.41 16 30 H 0.16 0.21 8.06 -2.91 -0.02 0.19 16 31 H 0.41 7.23 7.65 -92.71 -0.71 6.53 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.03 1.81 7.07 -2.39 -0.02 1.79 16 36 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 37 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.04 1.60 4.60 -2.39 -0.01 1.59 16 39 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 42 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -68.68 356.12 3.03 -65.64 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -0.47 Total: 7.10 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 4.39 Total: -5.46 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -2.71 Total: -90.51 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.07 Total: -20.59 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.89 Total: 43.82 kcal Total: -68.68 3.03 -65.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156461601.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.545 kcal (2) G-P(sol) polarization free energy of solvation -68.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds