Wall clock time and date at job start Tue Mar 31 2020 14:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29903 * 124.85667 * 2 1 4 4 C 1.36058 * 108.80031 * 179.97438 * 3 2 1 5 5 C 1.39590 * 133.80480 * 179.97438 * 4 3 2 6 6 C 1.37684 * 119.72899 * 180.02562 * 5 4 3 7 7 C 1.50696 * 119.79132 * 179.97438 * 6 5 4 8 8 N 1.46511 * 109.47159 * 89.99652 * 7 6 5 9 9 C 1.38370 * 119.99722 * 180.02562 * 8 7 6 10 10 C 1.39701 * 119.43360 * 0.02562 * 9 8 7 11 11 C 1.36560 * 119.49336 * 180.02562 * 10 9 8 12 12 C 1.41324 * 118.41069 * 359.97438 * 11 10 9 13 13 C 1.41201 * 120.57145 * 180.27662 * 12 11 10 14 14 H 1.07995 * 119.99577 * 154.60356 * 13 12 11 15 15 C 1.39873 * 120.00087 * 334.60342 * 13 12 11 16 16 N 1.30906 * 119.99751 * 344.02397 * 15 13 12 17 17 Si 1.86796 * 119.99856 * 164.01954 * 15 13 12 18 18 H 1.48497 * 109.47484 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46656 * 120.00164 * 17 15 13 20 20 H 1.48497 * 109.47169 * 240.00021 * 17 15 13 21 21 C 1.40752 * 118.85755 * 0.02562 * 12 11 10 22 22 C 1.50700 * 119.81851 * 179.97438 * 21 12 11 23 23 N 1.31486 * 120.36861 * 0.02562 * 21 12 11 24 24 C 1.38720 * 120.42012 * 0.24788 * 6 5 4 25 25 C 1.37911 * 120.47600 * 359.49245 * 24 6 5 26 26 C 1.38668 * 119.87330 * 0.50971 * 25 24 6 27 27 O 1.34229 * 124.85702 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47181 * 90.00259 * 1 2 3 29 29 H 1.09001 * 109.47655 * 209.99993 * 1 2 3 30 30 H 1.09000 * 109.47853 * 330.00397 * 1 2 3 31 31 H 1.08001 * 120.14008 * 0.02562 * 5 4 3 32 32 H 1.09000 * 109.47044 * 330.00043 * 7 6 5 33 33 H 1.08995 * 109.47444 * 209.99385 * 7 6 5 34 34 H 0.96996 * 119.99365 * 0.02562 * 8 7 6 35 35 H 1.08006 * 120.25505 * 359.95794 * 10 9 8 36 36 H 1.08008 * 120.79520 * 180.02562 * 11 10 9 37 37 H 0.96996 * 119.99679 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.46755 * 90.00334 * 22 21 12 39 39 H 1.08999 * 109.47295 * 209.99985 * 22 21 12 40 40 H 1.08996 * 109.46828 * 330.00244 * 22 21 12 41 41 H 1.08000 * 119.76109 * 179.74691 * 24 6 5 42 42 H 1.08001 * 120.06399 * 180.25328 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2494 1.0660 0.0000 4 6 3.5569 0.6897 0.0006 5 6 4.7641 1.3905 0.0004 6 6 5.9548 0.6994 0.0006 7 6 7.2589 1.4546 -0.0002 8 7 7.6818 1.7004 1.3809 9 6 8.8588 2.3828 1.6329 10 6 9.6345 2.8326 0.5617 11 6 10.7966 3.5058 0.8090 12 6 11.1739 3.7245 2.1533 13 6 12.3634 4.4203 2.4612 14 1 12.4571 4.9384 3.4041 15 6 13.4202 4.4384 1.5451 16 7 13.4473 3.5767 0.5601 17 14 14.7927 5.6923 1.7273 18 1 14.5293 6.5458 2.9136 19 1 16.0874 4.9867 1.9035 20 1 14.8529 6.5407 0.5101 21 6 10.3409 3.2415 3.1799 22 6 10.7226 3.4621 4.6209 23 7 9.2319 2.5979 2.8886 24 6 5.9618 -0.6878 -0.0041 25 6 4.7768 -1.3933 0.0014 26 6 3.5683 -0.7134 0.0010 27 8 2.2741 -1.1015 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3635 0.8900 0.5137 31 1 4.7641 2.4705 0.0001 32 1 7.1272 2.4065 -0.5146 33 1 8.0193 0.8662 -0.5136 34 1 7.1366 1.3847 2.1184 35 1 9.3181 2.6484 -0.4544 36 1 11.4122 3.8632 -0.0032 37 1 14.1799 3.5895 -0.0754 38 1 10.2994 4.4045 4.9686 39 1 10.3360 2.6440 5.2286 40 1 11.8086 3.4974 4.7077 41 1 6.9021 -1.2192 -0.0081 42 1 4.7900 -2.4732 0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156933418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:49 Heat of formation + Delta-G solvation = 66.107671 kcal Electronic energy + Delta-G solvation = -25100.978930 eV Core-core repulsion = 21432.926900 eV Total energy + Delta-G solvation = -3668.052030 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.45058 -38.99797 -38.34022 -35.38118 -35.01150 -33.64524 -32.04597 -31.40613 -30.84767 -29.85326 -28.41703 -26.86394 -25.71762 -24.04104 -22.70870 -22.26919 -21.76829 -21.21372 -19.93654 -17.97593 -17.36413 -17.20345 -17.07880 -16.47102 -15.54019 -15.26409 -14.91931 -14.41387 -14.36771 -13.86097 -13.67385 -13.63193 -13.46945 -13.41856 -13.12051 -12.66574 -12.61052 -12.48354 -11.96323 -11.82096 -11.58867 -11.47324 -11.45523 -11.34720 -11.17001 -11.13057 -10.80722 -10.65945 -10.51510 -9.67439 -9.36332 -8.89876 -8.65748 -8.61730 -8.12951 -7.98407 -6.80101 -6.56800 -4.16355 0.49025 0.95758 2.17716 2.23481 2.74494 2.98465 3.10460 3.15656 3.30280 3.36350 3.51420 3.97413 4.29636 4.30664 4.57985 4.69504 4.71182 4.83059 4.91063 4.97073 5.10301 5.17168 5.24544 5.60094 5.61877 5.73494 5.80097 5.86681 5.99895 6.03151 6.08055 6.36225 6.40912 6.43773 6.51587 6.56278 6.71351 6.82904 7.07432 7.24357 7.38496 7.40675 7.48911 7.75953 7.93063 8.27439 8.45701 8.67106 8.87319 8.94335 9.75756 10.25960 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.031109 B = 0.002126 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.837845 B =13167.130853 C =13409.537143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.240 3.760 3 N -0.478 5.478 4 C 0.018 3.982 5 C -0.041 4.041 6 C -0.093 4.093 7 C 0.186 3.814 8 N -0.741 5.741 9 C 0.284 3.716 10 C -0.209 4.209 11 C -0.091 4.091 12 C 0.033 3.967 13 C -0.452 4.452 14 H 0.080 0.920 15 C 0.072 3.928 16 N -0.807 5.807 17 Si 0.906 3.094 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.274 1.274 21 C 0.037 3.963 22 C -0.070 4.070 23 N -0.521 5.521 24 C -0.071 4.071 25 C -0.097 4.097 26 C 0.009 3.991 27 O -0.217 6.217 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.139 0.861 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.390 0.610 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.278 0.722 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.068 0.932 41 H 0.145 0.855 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.162 -8.149 -4.197 20.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.029 3.971 3 N -0.208 5.208 4 C -0.093 4.093 5 C -0.060 4.060 6 C -0.095 4.095 7 C 0.061 3.939 8 N -0.381 5.381 9 C 0.052 3.948 10 C -0.233 4.233 11 C -0.118 4.118 12 C 0.028 3.972 13 C -0.483 4.483 14 H 0.098 0.902 15 C -0.143 4.143 16 N -0.434 5.434 17 Si 0.731 3.269 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.199 1.199 21 C -0.102 4.102 22 C -0.128 4.128 23 N -0.236 5.236 24 C -0.089 4.089 25 C -0.116 4.116 26 C -0.041 4.041 27 O -0.109 6.109 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.157 0.843 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.223 0.777 35 H 0.115 0.885 36 H 0.145 0.855 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.162 0.838 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.682 -7.877 -3.903 20.647 hybrid contribution 1.220 -0.069 -0.584 1.355 sum -17.462 -7.947 -4.487 19.703 Atomic orbital electron populations 1.20399 0.80921 1.05568 1.05112 1.26455 0.96623 0.78348 0.95689 1.70613 1.01048 1.28984 1.20139 1.19802 0.92027 0.91305 1.06126 1.20267 0.87984 1.00509 0.97237 1.19893 0.94839 0.93726 1.01031 1.19879 0.90485 0.98023 0.85520 1.43580 1.24183 1.65716 1.04653 1.17644 0.88881 0.99018 0.89252 1.20794 0.98470 1.07319 0.96669 1.21283 0.94089 0.98701 0.97683 1.18171 0.93987 0.93717 0.91312 1.19375 0.97563 1.28438 1.02974 0.90178 1.25865 0.99264 0.94882 0.94324 1.69825 1.30914 1.29728 1.12901 0.86289 0.80187 0.81047 0.79355 1.18460 1.20172 1.19924 1.20735 0.92956 1.01311 0.95160 1.20251 1.01081 0.99608 0.91855 1.66295 1.18761 1.18746 1.19843 1.21038 0.97391 0.93432 0.97064 1.19848 0.87164 1.00284 1.04274 1.20332 0.83728 0.94566 1.05481 1.84463 1.15441 1.36246 1.74761 0.88405 0.88933 0.87665 0.84347 0.92011 0.91791 0.77653 0.88488 0.85511 0.91155 0.93432 0.93444 0.91337 0.83760 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 36.00 0.38 0.07 16 2 C 0.24 2.54 8.24 -13.10 -0.11 2.44 16 3 N -0.48 -6.42 11.34 -8.71 -0.10 -6.52 16 4 C 0.02 0.26 7.24 -84.71 -0.61 -0.36 16 5 C -0.04 -0.54 9.73 -39.28 -0.38 -0.92 16 6 C -0.09 -1.17 5.24 -104.65 -0.55 -1.72 16 7 C 0.19 2.67 4.98 -5.19 -0.03 2.64 16 8 N -0.74 -13.35 5.70 -61.53 -0.35 -13.70 16 9 C 0.28 6.43 7.64 -155.13 -1.19 5.25 16 10 C -0.21 -4.80 9.24 -39.64 -0.37 -5.17 16 11 C -0.09 -2.33 8.73 -39.02 -0.34 -2.67 16 12 C 0.03 0.88 5.58 -106.65 -0.59 0.28 16 13 C -0.45 -11.74 8.14 -37.85 -0.31 -12.05 16 14 H 0.08 1.99 6.87 -52.49 -0.36 1.63 16 15 C 0.07 1.79 5.19 -17.33 -0.09 1.70 16 16 N -0.81 -20.63 10.94 55.54 0.61 -20.02 16 17 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 18 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 C 0.04 0.93 6.86 -81.79 -0.56 0.37 16 22 C -0.07 -1.51 9.57 36.01 0.34 -1.16 16 23 N -0.52 -12.77 10.29 -8.05 -0.08 -12.85 16 24 C -0.07 -0.78 9.67 -39.52 -0.38 -1.16 16 25 C -0.10 -1.05 10.06 -39.54 -0.40 -1.44 16 26 C 0.01 0.11 7.43 -38.65 -0.29 -0.17 16 27 O -0.22 -2.57 10.77 3.64 0.04 -2.53 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16 33 H 0.06 0.89 7.84 -51.93 -0.41 0.49 16 34 H 0.39 6.84 8.58 -40.82 -0.35 6.49 16 35 H 0.10 1.96 6.64 -52.48 -0.35 1.61 16 36 H 0.13 3.32 6.25 -52.48 -0.33 2.99 16 37 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.44 6.77 -51.93 -0.35 1.09 16 41 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -31.22 357.96 -10.06 -41.28 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.07 Total: 9.47 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -5.47 Total: -14.06 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.08 Total: -53.10 kcal Atomic # 8 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.22 -10.06 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156933418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.389 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds