Wall clock time and date at job start Tue Mar 31 2020 14:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29902 * 124.85604 * 2 1 4 4 C 1.36057 * 108.80172 * 179.97438 * 3 2 1 5 5 C 1.39592 * 133.81124 * 180.02562 * 4 3 2 6 6 C 1.37679 * 119.73309 * 179.97438 * 5 4 3 7 7 C 1.50696 * 119.79086 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47195 * 90.00180 * 7 6 5 9 9 C 1.38087 * 120.00134 * 180.02562 * 8 7 6 10 10 N 1.32274 * 119.90311 * 359.97438 * 9 8 7 11 11 C 1.31963 * 121.86595 * 179.97438 * 10 9 8 12 12 C 1.50696 * 119.28022 * 179.97438 * 11 10 9 13 13 C 1.38684 * 121.44879 * 0.26005 * 11 10 9 14 14 C 1.38017 * 119.62573 * 359.48709 * 13 11 10 15 15 C 1.41003 * 118.27532 * 0.49427 * 14 13 11 16 16 C 1.41023 * 120.70207 * 179.72767 * 15 14 13 17 17 H 1.08001 * 119.99710 * 155.10201 * 16 15 14 18 18 C 1.39951 * 119.99941 * 335.10606 * 16 15 14 19 19 N 1.30863 * 120.00021 * 343.24658 * 18 16 15 20 20 Si 1.86802 * 119.99913 * 163.25052 * 18 16 15 21 21 H 1.48504 * 109.47000 * 94.67545 * 20 18 16 22 22 H 1.48493 * 109.47260 * 214.67602 * 20 18 16 23 23 H 1.48496 * 109.47204 * 334.67984 * 20 18 16 24 24 C 1.38729 * 120.42020 * 0.25191 * 6 5 4 25 25 C 1.37907 * 120.47250 * 359.48898 * 24 6 5 26 26 C 1.38666 * 119.87705 * 0.50645 * 25 24 6 27 27 O 1.34224 * 124.85471 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47081 * 89.99850 * 1 2 3 29 29 H 1.09000 * 109.47524 * 209.99449 * 1 2 3 30 30 H 1.09003 * 109.47267 * 330.00039 * 1 2 3 31 31 H 1.07999 * 120.13363 * 0.02562 * 5 4 3 32 32 H 1.08999 * 109.46680 * 330.00112 * 7 6 5 33 33 H 1.09002 * 109.47045 * 210.00449 * 7 6 5 34 34 H 0.96996 * 120.00092 * 359.97438 * 8 7 6 35 35 H 1.08996 * 109.47446 * 89.99828 * 12 11 10 36 36 H 1.09000 * 109.47498 * 210.00369 * 12 11 10 37 37 H 1.09003 * 109.47003 * 330.00017 * 12 11 10 38 38 H 1.07999 * 120.18789 * 179.74406 * 13 11 10 39 39 H 1.07995 * 120.86190 * 180.22243 * 14 13 11 40 40 H 0.97000 * 120.00032 * 179.97438 * 19 18 16 41 41 H 1.07998 * 119.76263 * 179.73851 * 24 6 5 42 42 H 1.08007 * 120.06147 * 180.25338 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2494 1.0660 0.0000 4 6 3.5569 0.6897 0.0006 5 6 4.7642 1.3905 0.0013 6 6 5.9549 0.6993 0.0023 7 6 7.2590 1.4546 0.0025 8 7 7.6809 1.7001 1.3837 9 6 8.8554 2.3811 1.6363 10 7 9.5982 2.8104 0.6295 11 6 10.7268 3.4654 0.8263 12 6 11.5278 3.9275 -0.3636 13 6 11.1950 3.7327 2.1040 14 6 10.4649 3.3169 3.1990 15 6 9.2611 2.6184 2.9730 16 6 8.4778 2.1651 4.0545 17 1 7.4177 2.0052 3.9238 18 6 9.0741 1.9224 5.2972 19 7 10.3734 1.7938 5.3855 20 14 8.0153 1.7820 6.8297 21 1 7.7066 0.3527 7.0888 22 1 8.7474 2.3486 7.9908 23 1 6.7501 2.5328 6.6279 24 6 5.9619 -0.6879 -0.0027 25 6 4.7769 -1.3933 0.0019 26 6 3.5683 -0.7134 0.0010 27 8 2.2741 -1.1014 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 4.7642 2.4705 0.0019 32 1 7.1275 2.4065 -0.5120 33 1 8.0197 0.8662 -0.5107 34 1 7.1350 1.3850 2.1209 35 1 11.2054 4.9279 -0.6523 36 1 12.5861 3.9478 -0.1035 37 1 11.3713 3.2410 -1.1957 38 1 12.1235 4.2668 2.2415 39 1 10.8090 3.5175 4.2028 40 1 10.7867 1.6260 6.2468 41 1 6.9021 -1.2193 -0.0061 42 1 4.7901 -2.4733 0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156934533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:53 Heat of formation + Delta-G solvation = 63.206051 kcal Electronic energy + Delta-G solvation = -25653.535064 eV Core-core repulsion = 21985.357210 eV Total energy + Delta-G solvation = -3668.177854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.31494 -38.85679 -38.22785 -35.04882 -34.74757 -34.09635 -31.98468 -31.28283 -30.62739 -29.49247 -28.32890 -27.57362 -25.44714 -23.75702 -22.55884 -22.10165 -21.63531 -20.73365 -20.53703 -17.82533 -17.25726 -17.17383 -16.95423 -16.15564 -15.59981 -15.33542 -14.69015 -14.25037 -14.21523 -13.84441 -13.64438 -13.56203 -13.39449 -13.22546 -13.01650 -12.65891 -12.59161 -12.32472 -11.96348 -11.78812 -11.60838 -11.45201 -11.42623 -11.31845 -11.27403 -11.12149 -10.81789 -10.52366 -10.49725 -9.78089 -9.25186 -8.87358 -8.77059 -8.49301 -8.05201 -7.87153 -6.80943 -6.49420 -4.20940 0.63314 1.12366 2.31010 2.36275 2.72025 3.06389 3.08434 3.12551 3.23159 3.53199 3.64241 3.92594 4.44728 4.54972 4.66902 4.74380 4.83212 4.98744 4.99728 5.12373 5.23849 5.31697 5.37642 5.65503 5.75779 5.85368 5.91894 6.01386 6.15310 6.15642 6.20651 6.23227 6.45009 6.46237 6.56798 6.59083 6.63191 6.81205 6.94623 7.13180 7.22704 7.51461 7.65408 7.79594 8.01791 8.28053 8.51275 8.66082 8.79237 8.99922 9.78855 10.20295 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.003452 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.739749 B = 8108.546580 C = 9912.302268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.238 3.762 3 N -0.477 5.477 4 C 0.019 3.981 5 C -0.042 4.042 6 C -0.092 4.092 7 C 0.188 3.812 8 N -0.727 5.727 9 C 0.307 3.693 10 N -0.528 5.528 11 C 0.025 3.975 12 C -0.073 4.073 13 C -0.184 4.184 14 C -0.124 4.124 15 C 0.032 3.968 16 C -0.455 4.455 17 H 0.074 0.926 18 C 0.077 3.923 19 N -0.798 5.798 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.070 4.070 25 C -0.098 4.098 26 C 0.007 3.993 27 O -0.218 6.218 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.138 0.862 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.404 0.596 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.279 0.721 41 H 0.144 0.856 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.952 -5.232 -8.064 16.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.026 3.974 3 N -0.208 5.208 4 C -0.092 4.092 5 C -0.062 4.062 6 C -0.094 4.094 7 C 0.063 3.937 8 N -0.367 5.367 9 C 0.070 3.930 10 N -0.246 5.246 11 C -0.109 4.109 12 C -0.131 4.131 13 C -0.207 4.207 14 C -0.150 4.150 15 C 0.025 3.975 16 C -0.487 4.487 17 H 0.092 0.908 18 C -0.140 4.140 19 N -0.424 5.424 20 Si 0.728 3.272 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.089 4.089 25 C -0.116 4.116 26 C -0.043 4.043 27 O -0.110 6.110 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.156 0.844 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.241 0.759 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.090 0.910 41 H 0.162 0.838 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.185 -4.799 -8.935 16.634 hybrid contribution -0.080 -0.814 2.023 2.182 sum -13.264 -5.614 -6.912 15.976 Atomic orbital electron populations 1.20380 0.81028 1.05500 1.05001 1.26417 0.96579 0.78418 0.95975 1.70597 1.01120 1.28999 1.20056 1.19795 0.91969 0.91302 1.06171 1.20270 0.87988 1.00472 0.97444 1.20057 0.95229 0.93780 1.00326 1.19771 0.89746 0.97948 0.86250 1.43688 1.23738 1.64285 1.04985 1.18372 0.88797 0.96678 0.89187 1.66322 1.07444 1.15900 1.34974 1.19945 0.93913 1.04078 0.93005 1.20282 0.97385 0.99658 0.95803 1.21224 1.00618 1.05262 0.93563 1.21341 0.96499 0.99286 0.97903 1.17895 0.94639 0.94527 0.90459 1.19135 0.95524 1.40015 0.93989 0.90804 1.25786 0.95045 0.92734 1.00460 1.69811 1.10788 1.35034 1.26748 0.86372 0.80959 0.79138 0.80718 1.19704 1.20075 1.18545 1.21051 0.97317 0.93525 0.96965 1.19837 0.87185 1.00199 1.04428 1.20325 0.83664 0.94589 1.05708 1.84451 1.15484 1.36215 1.74842 0.88504 0.89004 0.87730 0.84438 0.92086 0.91890 0.75933 0.93265 0.92933 0.92775 0.88788 0.85724 0.90983 0.83813 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.01 0.38 0.00 16 2 C 0.24 2.82 8.24 -13.09 -0.11 2.71 16 3 N -0.48 -7.08 11.34 -8.70 -0.10 -7.17 16 4 C 0.02 0.29 7.24 -84.71 -0.61 -0.33 16 5 C -0.04 -0.64 9.73 -39.28 -0.38 -1.02 16 6 C -0.09 -1.34 5.24 -104.65 -0.55 -1.89 16 7 C 0.19 3.16 5.79 -5.20 -0.03 3.13 16 8 N -0.73 -14.84 5.60 -61.15 -0.34 -15.18 16 9 C 0.31 7.44 7.52 -155.03 -1.17 6.27 16 10 N -0.53 -12.60 9.44 -8.11 -0.08 -12.68 16 11 C 0.03 0.57 6.79 -82.37 -0.56 0.01 16 12 C -0.07 -1.33 10.15 36.00 0.37 -0.97 16 13 C -0.18 -4.36 9.69 -39.50 -0.38 -4.74 16 14 C -0.12 -3.21 8.79 -38.62 -0.34 -3.55 16 15 C 0.03 0.83 5.60 -106.47 -0.60 0.23 16 16 C -0.46 -11.61 8.53 -37.89 -0.32 -11.93 16 17 H 0.07 1.79 6.68 -52.49 -0.35 1.44 16 18 C 0.08 1.89 5.18 -17.32 -0.09 1.80 16 19 N -0.80 -20.32 10.96 55.55 0.61 -19.71 16 20 Si 0.90 18.51 29.59 -169.99 -5.03 13.48 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 C -0.07 -0.91 9.67 -39.52 -0.38 -1.29 16 25 C -0.10 -1.22 10.06 -39.54 -0.40 -1.61 16 26 C 0.01 0.10 7.43 -38.64 -0.29 -0.19 16 27 O -0.22 -2.88 10.77 3.63 0.04 -2.84 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.40 8.17 6.66 -40.82 -0.27 7.90 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.98 8.06 -52.49 -0.42 1.56 16 39 H 0.13 3.31 6.26 -52.49 -0.33 2.98 16 40 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 41 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -30.70 360.25 -10.08 -40.78 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.15 Total: 11.24 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -5.46 Total: -13.35 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.09 Total: -54.75 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.70 -10.08 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156934533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.988 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds