Wall clock time and date at job start Tue Mar 31 2020 14:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29902 * 124.85604 * 2 1 4 4 C 1.36057 * 108.80172 * 179.97438 * 3 2 1 5 5 C 1.39592 * 133.81124 * 180.02562 * 4 3 2 6 6 C 1.37679 * 119.73309 * 179.97438 * 5 4 3 7 7 C 1.50696 * 119.79086 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47195 * 90.00180 * 7 6 5 9 9 C 1.38087 * 120.00134 * 180.02562 * 8 7 6 10 10 N 1.32274 * 119.90311 * 359.97438 * 9 8 7 11 11 C 1.31963 * 121.86595 * 179.97438 * 10 9 8 12 12 C 1.50696 * 119.28022 * 179.97438 * 11 10 9 13 13 C 1.38684 * 121.44879 * 0.26005 * 11 10 9 14 14 C 1.38017 * 119.62573 * 359.48709 * 13 11 10 15 15 C 1.41003 * 118.27532 * 0.49427 * 14 13 11 16 16 C 1.41023 * 120.70207 * 179.72767 * 15 14 13 17 17 H 1.08001 * 119.99710 * 155.10201 * 16 15 14 18 18 C 1.39951 * 119.99941 * 335.10606 * 16 15 14 19 19 N 1.30863 * 120.00021 * 343.24658 * 18 16 15 20 20 Si 1.86802 * 119.99913 * 163.25052 * 18 16 15 21 21 H 1.48504 * 109.47000 * 94.67545 * 20 18 16 22 22 H 1.48493 * 109.47260 * 214.67602 * 20 18 16 23 23 H 1.48496 * 109.47204 * 334.67984 * 20 18 16 24 24 C 1.38729 * 120.42020 * 0.25191 * 6 5 4 25 25 C 1.37907 * 120.47250 * 359.48898 * 24 6 5 26 26 C 1.38666 * 119.87705 * 0.50645 * 25 24 6 27 27 O 1.34224 * 124.85471 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47081 * 89.99850 * 1 2 3 29 29 H 1.09000 * 109.47524 * 209.99449 * 1 2 3 30 30 H 1.09003 * 109.47267 * 330.00039 * 1 2 3 31 31 H 1.07999 * 120.13363 * 0.02562 * 5 4 3 32 32 H 1.08999 * 109.46680 * 330.00112 * 7 6 5 33 33 H 1.09002 * 109.47045 * 210.00449 * 7 6 5 34 34 H 0.96996 * 120.00092 * 359.97438 * 8 7 6 35 35 H 1.08996 * 109.47446 * 89.99828 * 12 11 10 36 36 H 1.09000 * 109.47498 * 210.00369 * 12 11 10 37 37 H 1.09003 * 109.47003 * 330.00017 * 12 11 10 38 38 H 1.07999 * 120.18789 * 179.74406 * 13 11 10 39 39 H 1.07995 * 120.86190 * 180.22243 * 14 13 11 40 40 H 0.97000 * 120.00032 * 179.97438 * 19 18 16 41 41 H 1.07998 * 119.76263 * 179.73851 * 24 6 5 42 42 H 1.08007 * 120.06147 * 180.25338 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2494 1.0660 0.0000 4 6 3.5569 0.6897 0.0006 5 6 4.7642 1.3905 0.0013 6 6 5.9549 0.6993 0.0023 7 6 7.2590 1.4546 0.0025 8 7 7.6809 1.7001 1.3837 9 6 8.8554 2.3811 1.6363 10 7 9.5982 2.8104 0.6295 11 6 10.7268 3.4654 0.8263 12 6 11.5278 3.9275 -0.3636 13 6 11.1950 3.7327 2.1040 14 6 10.4649 3.3169 3.1990 15 6 9.2611 2.6184 2.9730 16 6 8.4778 2.1651 4.0545 17 1 7.4177 2.0052 3.9238 18 6 9.0741 1.9224 5.2972 19 7 10.3734 1.7938 5.3855 20 14 8.0153 1.7820 6.8297 21 1 7.7066 0.3527 7.0888 22 1 8.7474 2.3486 7.9908 23 1 6.7501 2.5328 6.6279 24 6 5.9619 -0.6879 -0.0027 25 6 4.7769 -1.3933 0.0019 26 6 3.5683 -0.7134 0.0010 27 8 2.2741 -1.1014 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 4.7642 2.4705 0.0019 32 1 7.1275 2.4065 -0.5120 33 1 8.0197 0.8662 -0.5107 34 1 7.1350 1.3850 2.1209 35 1 11.2054 4.9279 -0.6523 36 1 12.5861 3.9478 -0.1035 37 1 11.3713 3.2410 -1.1957 38 1 12.1235 4.2668 2.2415 39 1 10.8090 3.5175 4.2028 40 1 10.7867 1.6260 6.2468 41 1 6.9021 -1.2193 -0.0061 42 1 4.7901 -2.4733 0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156934533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:51 Heat of formation + Delta-G solvation = 44.622015 kcal Electronic energy + Delta-G solvation = -25654.340928 eV Core-core repulsion = 21985.357210 eV Total energy + Delta-G solvation = -3668.983718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -44.32092 -40.49875 -39.52678 -36.45841 -35.97058 -35.86061 -33.19208 -32.50356 -32.18758 -30.96949 -29.59669 -29.05626 -26.83734 -25.45954 -23.56126 -23.39043 -22.61255 -22.52605 -22.24266 -19.13882 -18.89774 -18.30600 -17.95524 -17.68112 -17.28264 -16.78194 -16.18342 -15.59334 -15.42035 -15.24048 -15.03995 -14.87435 -14.46228 -14.29298 -14.08061 -13.98781 -13.84028 -13.53827 -13.37016 -13.30229 -13.17870 -12.99061 -12.86502 -12.76690 -12.54049 -12.47690 -12.27121 -12.15700 -11.63157 -11.55892 -11.08221 -10.59885 -10.02444 -9.83391 -9.70488 -9.52529 -8.64834 -8.29192 -6.11732 -0.36924 0.00231 0.92171 1.23415 1.32736 1.38517 1.43425 1.47673 1.53122 2.21146 2.37989 2.76398 2.80887 3.01816 3.41102 3.62629 3.78584 3.96053 3.99222 4.13666 4.20608 4.24564 4.54394 4.58189 4.60860 4.61110 4.70862 4.75929 4.77972 4.92800 4.95568 4.99107 5.02341 5.08937 5.12947 5.20358 5.26997 5.27573 5.43295 5.44970 5.54029 5.80536 5.91577 6.15170 6.41752 6.51582 6.77086 6.82504 6.91331 7.15449 7.94200 8.38915 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.003452 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.739749 B = 8108.546580 C = 9912.302268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.250 3.750 3 N -0.518 5.518 4 C -0.001 4.001 5 C -0.057 4.057 6 C -0.093 4.093 7 C 0.196 3.804 8 N -0.721 5.721 9 C 0.302 3.698 10 N -0.538 5.538 11 C 0.022 3.978 12 C -0.069 4.069 13 C -0.199 4.199 14 C -0.146 4.146 15 C -0.003 4.003 16 C -0.481 4.481 17 H 0.076 0.924 18 C 0.037 3.963 19 N -0.830 5.830 20 Si 0.974 3.026 21 H -0.264 1.264 22 H -0.269 1.269 23 H -0.263 1.263 24 C -0.073 4.073 25 C -0.086 4.086 26 C -0.008 4.008 27 O -0.220 6.220 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.403 0.597 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.285 0.715 41 H 0.162 0.838 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 -6.446 -8.666 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.039 3.961 3 N -0.249 5.249 4 C -0.112 4.112 5 C -0.077 4.077 6 C -0.094 4.094 7 C 0.072 3.928 8 N -0.360 5.360 9 C 0.064 3.936 10 N -0.257 5.257 11 C -0.112 4.112 12 C -0.126 4.126 13 C -0.221 4.221 14 C -0.172 4.172 15 C -0.010 4.010 16 C -0.512 4.512 17 H 0.094 0.906 18 C -0.176 4.176 19 N -0.457 5.457 20 Si 0.796 3.204 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.187 1.187 24 C -0.091 4.091 25 C -0.104 4.104 26 C -0.058 4.058 27 O -0.112 6.112 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.148 0.852 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.239 0.761 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.179 0.821 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -14.587 -6.018 -9.561 18.450 hybrid contribution 0.282 -0.431 2.085 2.148 sum -14.305 -6.449 -7.476 17.381 Atomic orbital electron populations 1.20766 0.76969 1.07138 1.06973 1.27632 0.98337 0.77405 0.92721 1.70611 1.01185 1.30494 1.22578 1.19995 0.92370 0.92205 1.06594 1.20234 0.88476 1.00272 0.98680 1.19824 0.93782 0.94476 1.01351 1.19752 0.90957 0.97997 0.84136 1.43798 1.22516 1.63197 1.06534 1.18636 0.89676 0.96379 0.88933 1.66506 1.08000 1.16617 1.34609 1.20789 0.93626 1.02316 0.94509 1.20343 0.97871 1.00495 0.93902 1.21477 1.01452 1.05735 0.93422 1.21371 0.97408 1.00475 0.97982 1.18229 0.95418 0.95671 0.91691 1.19334 0.95663 1.41267 0.94942 0.90638 1.26564 0.96137 0.91962 1.02982 1.69872 1.12287 1.35831 1.27747 0.85309 0.78965 0.79273 0.76889 1.18902 1.19362 1.18656 1.21224 0.98435 0.92722 0.96720 1.20160 0.86160 1.01659 1.02426 1.20627 0.84643 0.94332 1.06189 1.84474 1.15115 1.36706 1.74917 0.86109 0.86558 0.86777 0.85190 0.92772 0.91680 0.76072 0.91514 0.90738 0.92006 0.86548 0.87331 0.90419 0.82083 0.81618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.51 71.24 0.75 0.18 16 2 C 0.25 5.56 8.24 88.39 0.73 6.29 16 3 N -0.52 -15.23 11.34 -296.28 -3.36 -18.59 16 4 C 0.00 -0.04 7.24 39.32 0.28 0.25 16 5 C -0.06 -1.76 9.73 22.46 0.22 -1.54 16 6 C -0.09 -2.71 5.24 -19.88 -0.10 -2.81 16 7 C 0.20 6.66 5.79 85.63 0.50 7.16 16 8 N -0.72 -30.07 5.60 -347.39 -1.95 -32.02 16 9 C 0.30 14.93 7.52 134.05 1.01 15.93 16 10 N -0.54 -25.71 9.44 -179.58 -1.70 -27.41 16 11 C 0.02 1.00 6.79 42.64 0.29 1.29 16 12 C -0.07 -2.33 10.15 71.23 0.72 -1.61 16 13 C -0.20 -9.44 9.69 22.32 0.22 -9.22 16 14 C -0.15 -7.80 8.79 22.90 0.20 -7.60 16 15 C 0.00 -0.17 5.60 -21.06 -0.12 -0.29 16 16 C -0.48 -25.25 8.53 23.37 0.20 -25.06 16 17 H 0.08 3.78 6.68 -2.91 -0.02 3.76 16 18 C 0.04 1.87 5.18 85.25 0.44 2.32 16 19 N -0.83 -43.39 10.96 21.83 0.24 -43.15 16 20 Si 0.97 38.40 29.59 68.60 2.03 40.43 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 22 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 24 C -0.07 -1.79 9.67 22.31 0.22 -1.58 16 25 C -0.09 -1.98 10.06 22.29 0.22 -1.75 16 26 C -0.01 -0.21 7.43 22.88 0.17 -0.04 16 27 O -0.22 -5.43 10.77 -9.92 -0.11 -5.54 16 28 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 32 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 33 H 0.07 2.20 8.08 -2.39 -0.02 2.18 16 34 H 0.40 16.75 6.66 -92.71 -0.62 16.13 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.11 6.03 6.26 -2.91 -0.02 6.02 16 40 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 41 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 42 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -68.41 360.25 1.55 -66.86 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: 0.45 Total: 37.51 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 5.94 Total: -18.10 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -6.76 Total: -121.16 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.11 Total: -5.54 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -68.41 1.55 -66.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156934533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.478 kcal (2) G-P(sol) polarization free energy of solvation -68.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds