Wall clock time and date at job start Tue Mar 31 2020 15:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21270 * 119.99636 * 2 1 4 4 N 1.34774 * 120.00069 * 179.97438 * 2 1 3 5 5 C 1.38928 * 119.99791 * 180.02562 * 4 2 1 6 6 N 1.32412 * 119.16607 * 359.97438 * 5 4 2 7 7 C 1.32481 * 120.94323 * 180.02562 * 6 5 4 8 8 C 1.50705 * 120.36311 * 179.97438 * 7 6 5 9 9 C 1.38135 * 119.28103 * 359.97438 * 7 6 5 10 10 N 1.48018 * 120.76885 * 179.72511 * 9 7 6 11 11 O 1.21808 * 120.00124 * 90.00156 * 10 9 7 12 12 O 1.21801 * 120.00388 * 269.99712 * 10 9 7 13 13 C 1.39651 * 118.46940 * 0.02562 * 9 7 6 14 14 N 1.38535 * 120.49841 * 180.02562 * 13 9 7 15 15 C 1.46501 * 120.00330 * 179.97438 * 14 13 9 16 16 C 1.52997 * 109.47076 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47657 * 179.97438 * 17 16 15 19 19 H 1.08008 * 119.99574 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00413 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99824 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00163 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47216 * 89.99863 * 22 20 18 24 24 H 1.48498 * 109.47130 * 210.00130 * 22 20 18 25 25 H 1.48499 * 109.46997 * 330.00090 * 22 20 18 26 26 N 1.32357 * 119.16570 * 180.02562 * 5 4 2 27 27 H 1.09003 * 109.47466 * 270.00525 * 1 2 3 28 28 H 1.08996 * 109.47629 * 30.00568 * 1 2 3 29 29 H 1.09001 * 109.47159 * 150.00337 * 1 2 3 30 30 H 0.96993 * 120.00110 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.46499 * 270.02510 * 8 7 6 32 32 H 1.09002 * 109.46738 * 30.01599 * 8 7 6 33 33 H 1.08995 * 109.47183 * 150.02310 * 8 7 6 34 34 H 0.97003 * 119.99555 * 359.97438 * 14 13 9 35 35 H 1.09002 * 109.46438 * 299.99625 * 15 14 13 36 36 H 1.08995 * 109.46793 * 59.99776 * 15 14 13 37 37 H 1.09004 * 109.46770 * 299.99784 * 16 15 14 38 38 H 1.09000 * 109.47388 * 59.99786 * 16 15 14 39 39 H 1.09007 * 109.46630 * 300.00003 * 17 16 15 40 40 H 1.09000 * 109.47142 * 59.99541 * 17 16 15 41 41 H 0.96995 * 119.99604 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5701 -1.1671 0.0011 6 7 4.2154 -0.0108 0.0005 7 6 5.5395 0.0303 0.0005 8 6 6.2606 1.3537 -0.0007 9 6 6.2523 -1.1530 0.0016 10 7 7.7324 -1.1454 -0.0045 11 8 8.3458 -1.1388 1.0478 12 8 8.3371 -1.1459 -1.0618 13 6 5.5441 -2.3566 0.0021 14 7 6.2164 -3.5679 0.0037 15 6 5.4627 -4.8241 0.0048 16 6 6.4372 -6.0036 0.0059 17 6 5.6500 -7.3155 0.0064 18 6 6.6098 -8.4773 0.0068 19 1 7.6749 -8.2978 0.0063 20 6 6.1285 -9.7693 0.0078 21 7 4.8315 -9.9878 0.0089 22 14 7.3183 -11.2093 0.0090 23 1 7.6335 -11.5898 1.4094 24 1 6.6989 -12.3638 -0.6901 25 1 8.5683 -10.8192 -0.6913 26 7 4.2152 -2.3228 0.0011 27 1 -0.3634 0.0001 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6959 -2.0072 0.0013 31 1 6.4340 1.6719 -1.0287 32 1 5.6530 2.0989 0.5128 33 1 7.2161 1.2473 0.5129 34 1 7.1863 -3.5842 0.0041 35 1 4.8349 -4.8702 0.8947 36 1 4.8355 -4.8722 -0.8853 37 1 7.0647 -5.9571 -0.8842 38 1 7.0648 -5.9556 0.8958 39 1 5.0222 -7.3621 0.8963 40 1 5.0228 -7.3632 -0.8838 41 1 4.4929 -10.8967 0.0093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157643487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:50 Heat of formation + Delta-G solvation = -0.985029 kcal Electronic energy + Delta-G solvation = -26743.306515 eV Core-core repulsion = 22661.495864 eV Total energy + Delta-G solvation = -4081.810651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.63007 -42.52673 -40.75453 -38.58713 -37.70286 -36.72947 -36.07746 -34.74631 -33.80200 -32.34899 -30.79025 -30.46429 -28.63630 -27.08511 -25.23102 -24.80544 -23.52905 -22.41755 -22.04282 -20.61346 -20.11836 -20.01131 -19.29621 -18.53761 -18.36005 -17.43686 -17.39340 -17.32746 -16.56637 -16.54945 -16.06771 -15.93299 -15.15318 -14.74272 -14.65867 -14.37287 -14.09657 -13.90038 -13.81625 -13.57168 -13.38608 -13.22972 -12.93352 -12.88051 -12.65667 -12.59795 -12.44223 -12.37491 -12.22121 -12.03743 -11.70160 -11.58368 -11.30084 -11.24820 -10.59961 -10.57705 -10.57454 -9.83617 -8.23098 -6.33566 -0.85174 -0.74866 -0.26298 0.13282 1.02975 1.33456 1.40400 1.40555 1.51479 1.58777 2.27125 2.39219 2.45994 2.79551 3.11193 3.15873 3.41366 3.68573 3.90934 4.06028 4.07754 4.25633 4.34211 4.41632 4.50472 4.65040 4.70773 4.79203 4.81858 4.92075 4.95814 5.06389 5.09550 5.15279 5.43280 5.48956 5.64429 5.75959 5.79631 5.96802 6.19562 6.34180 6.67733 6.82243 6.94895 7.35912 8.88548 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.002899 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.055716 B = 9656.601731 C =11734.058607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.505 3.495 3 O -0.512 6.512 4 N -0.625 5.625 5 C 0.599 3.401 6 N -0.545 5.545 7 C 0.292 3.708 8 C -0.117 4.117 9 C -0.260 4.260 10 N 0.043 4.957 11 O -0.149 6.149 12 O -0.144 6.144 13 C 0.512 3.488 14 N -0.687 5.687 15 C 0.139 3.861 16 C -0.110 4.110 17 C 0.031 3.969 18 C -0.546 4.546 19 H 0.060 0.940 20 C 0.003 3.997 21 N -0.929 5.929 22 Si 0.962 3.038 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.265 1.265 26 N -0.594 5.594 27 H 0.121 0.879 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.443 0.557 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.415 0.585 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.000 1.000 40 H 0.000 1.000 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.353 22.550 -0.078 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.294 3.706 3 O -0.382 6.382 4 N -0.277 5.277 5 C 0.243 3.757 6 N -0.272 5.272 7 C 0.144 3.856 8 C -0.173 4.173 9 C -0.354 4.354 10 N 0.571 4.429 11 O -0.369 6.369 12 O -0.366 6.366 13 C 0.262 3.738 14 N -0.315 5.315 15 C 0.016 3.984 16 C -0.148 4.148 17 C -0.006 4.006 18 C -0.584 4.584 19 H 0.078 0.922 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.786 3.214 23 H -0.199 1.199 24 H -0.207 1.207 25 H -0.189 1.189 26 N -0.329 5.329 27 H 0.139 0.861 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.285 0.715 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.253 0.747 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.068 22.986 -0.071 24.710 hybrid contribution 1.873 -1.699 0.023 2.528 sum -7.196 21.287 -0.048 22.471 Atomic orbital electron populations 1.21980 0.84759 1.07430 1.07278 1.22353 0.92783 0.81526 0.73938 1.90846 1.71038 1.31605 1.44688 1.43819 1.00127 1.13508 1.70234 1.19770 0.88196 0.83545 0.84224 1.68805 1.06487 1.26442 1.25463 1.21652 0.88483 0.94275 0.81228 1.21109 0.99559 0.90573 1.06106 1.21739 0.80633 0.97602 1.35471 1.43101 1.02638 0.97167 1.00042 1.94571 1.68897 1.52159 1.21289 1.94567 1.69567 1.51885 1.20585 1.17653 0.87493 0.84621 0.84048 1.45107 1.09346 1.02935 1.74073 1.21549 0.94319 0.79791 1.02712 1.21679 0.97922 0.93462 1.01755 1.18863 0.94912 0.91188 0.95675 1.21648 0.93742 0.92121 1.50843 0.92216 1.25907 0.96846 1.02075 0.94692 1.70071 1.13747 1.21708 1.51422 0.85497 0.79015 0.78389 0.78469 1.19853 1.20729 1.18930 1.67618 1.05521 1.28752 1.30991 0.86090 0.87397 0.86727 0.71515 0.86494 0.86887 0.89760 0.74704 0.90882 0.90877 0.92004 0.91992 0.98176 0.98163 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 10.30 71.24 0.73 0.01 16 2 C 0.50 8.18 7.90 87.66 0.69 8.88 16 3 O -0.51 -13.07 15.29 -3.00 -0.05 -13.12 16 4 N -0.62 -10.67 5.40 -313.70 -1.69 -12.36 16 5 C 0.60 15.17 8.38 261.32 2.19 17.36 16 6 N -0.54 -14.71 7.80 -185.99 -1.45 -16.16 16 7 C 0.29 7.36 6.81 42.44 0.29 7.65 16 8 C -0.12 -2.13 9.99 71.24 0.71 -1.42 16 9 C -0.26 -7.14 6.20 36.69 0.23 -6.92 16 10 N 0.04 1.19 2.65 -45.71 -0.12 1.07 16 11 O -0.15 -4.28 19.20 18.88 0.36 -3.91 16 12 O -0.14 -4.12 19.26 18.89 0.36 -3.76 16 13 C 0.51 14.79 7.51 133.19 1.00 15.79 16 14 N -0.69 -19.88 5.69 -344.63 -1.96 -21.84 16 15 C 0.14 4.39 5.73 86.38 0.49 4.88 16 16 C -0.11 -4.14 5.27 30.59 0.16 -3.98 16 17 C 0.03 1.54 4.97 29.84 0.15 1.69 16 18 C -0.55 -29.91 9.11 25.60 0.23 -29.67 16 19 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 20 C 0.00 0.17 5.46 84.65 0.46 0.63 16 21 N -0.93 -54.69 13.29 21.45 0.28 -54.41 16 22 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 26 N -0.59 -16.29 9.72 -195.25 -1.90 -18.19 16 27 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.44 4.73 8.81 -92.71 -0.82 3.91 16 31 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.08 1.49 7.46 -2.39 -0.02 1.47 16 34 H 0.42 11.61 7.81 -92.71 -0.72 10.89 16 35 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 40 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -72.40 366.48 2.77 -69.64 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -0.44 Total: 12.87 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 7.34 Total: 14.92 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -6.84 Total: -121.89 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.68 Total: -20.79 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -72.40 2.77 -69.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157643487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.651 kcal (2) G-P(sol) polarization free energy of solvation -72.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds