Wall clock time and date at job start Tue Mar 31 2020 14:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31485 * 119.81526 * 2 1 4 4 C 1.32741 * 121.73331 * 180.02562 * 3 2 1 5 5 N 1.38375 * 119.43328 * 179.97438 * 4 3 2 6 6 C 1.46497 * 119.99984 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.09998 * 35.81166 * 6 5 4 8 8 C 1.50397 * 109.14696 * 154.99746 * 6 5 4 9 9 C 1.38661 * 118.73182 * 279.66690 * 8 6 5 10 10 C 1.38033 * 120.33973 * 180.10931 * 9 8 6 11 11 C 1.38262 * 119.81816 * 359.97438 * 10 9 8 12 12 C 1.38014 * 119.88268 * 359.97438 * 11 10 9 13 13 C 1.37827 * 121.38341 * 99.76018 * 8 6 5 14 14 C 1.50268 * 121.65825 * 359.85669 * 13 8 6 15 15 N 1.45283 * 111.93164 * 21.56953 * 14 13 8 16 16 C 1.33354 * 123.63302 * 337.84041 * 15 14 13 17 17 O 1.21287 * 118.61658 * 180.67296 * 16 15 14 18 18 C 1.39707 * 121.13694 * 0.25013 * 4 3 2 19 19 C 1.36560 * 119.49503 * 359.49206 * 18 4 3 20 20 C 1.40751 * 119.81626 * 180.02562 * 2 1 3 21 21 C 1.41197 * 120.57103 * 359.95735 * 20 2 1 22 22 H 1.08003 * 120.00214 * 329.70850 * 21 20 2 23 23 C 1.39872 * 120.00247 * 149.71146 * 21 20 2 24 24 N 1.30892 * 120.00566 * 162.33644 * 23 21 20 25 25 Si 1.86809 * 119.99751 * 342.33582 * 23 21 20 26 26 H 1.48504 * 109.46643 * 95.35827 * 25 23 21 27 27 H 1.48492 * 109.46879 * 215.35835 * 25 23 21 28 28 H 1.48500 * 109.46853 * 335.36075 * 25 23 21 29 29 H 1.08996 * 109.46949 * 90.00128 * 1 2 3 30 30 H 1.08998 * 109.46991 * 210.00559 * 1 2 3 31 31 H 1.09004 * 109.46950 * 330.00031 * 1 2 3 32 32 H 0.96996 * 119.99513 * 359.97438 * 5 4 3 33 33 H 1.08007 * 119.82849 * 0.12141 * 9 8 6 34 34 H 1.08003 * 120.09264 * 179.97438 * 10 9 8 35 35 H 1.08005 * 120.05794 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.81472 * 179.97438 * 12 11 10 37 37 H 1.08998 * 108.97604 * 142.16985 * 14 13 8 38 38 H 1.08997 * 108.98052 * 260.96514 * 14 13 8 39 39 H 0.96996 * 118.21542 * 157.93975 * 15 14 13 40 40 H 1.08003 * 120.25341 * 179.72510 * 18 4 3 41 41 H 1.07997 * 120.80245 * 180.26602 * 19 18 4 42 42 H 0.96995 * 120.00896 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4874 1.1852 -0.0005 5 7 4.1267 2.4125 -0.0010 6 6 5.5903 2.4760 -0.0010 7 1 5.9828 1.6567 -0.6033 8 6 6.0273 3.7835 -0.6021 9 6 6.0477 3.9087 -1.9829 10 6 6.4452 5.0930 -2.5698 11 6 6.8246 6.1601 -1.7766 12 6 6.8036 6.0368 -0.4021 13 6 6.4054 4.8466 0.1895 14 6 6.3975 4.7551 1.6894 15 7 6.4550 3.3783 2.1494 16 6 6.0881 2.3347 1.4045 17 8 6.1621 1.2235 1.8849 18 6 4.2495 0.0143 -0.0063 19 6 3.6200 -1.1976 -0.0010 20 6 2.2069 -1.2212 -0.0005 21 6 1.5092 -2.4487 -0.0002 22 1 0.5405 -2.5192 0.4722 23 6 2.0725 -3.5736 -0.6116 24 7 1.6197 -4.7685 -0.3279 25 14 3.4712 -3.3706 -1.8331 26 1 4.7690 -3.5493 -1.1336 27 1 3.3429 -4.3888 -2.9062 28 1 3.4136 -2.0121 -2.4301 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 3.6057 3.2306 -0.0014 33 1 5.7507 3.0752 -2.6023 34 1 6.4600 5.1860 -3.6457 35 1 7.1367 7.0885 -2.2318 36 1 7.1005 6.8708 0.2164 37 1 7.2584 5.2962 2.0820 38 1 5.4858 5.2174 2.0679 39 1 6.7767 3.2082 3.0485 40 1 5.3282 0.0671 -0.0111 41 1 4.1883 -2.1159 -0.0010 42 1 2.0105 -5.5486 -0.7515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158903460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:18 Heat of formation + Delta-G solvation = 32.800142 kcal Electronic energy + Delta-G solvation = -26710.872186 eV Core-core repulsion = 23041.375833 eV Total energy + Delta-G solvation = -3669.496353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.00088 -38.96301 -38.62218 -35.64860 -35.48021 -33.62095 -31.97700 -31.47273 -31.42625 -30.01721 -27.70184 -27.04973 -25.51821 -23.99207 -22.76660 -22.42575 -21.65319 -20.39269 -18.95352 -17.76623 -17.39008 -17.22466 -16.64056 -16.31504 -15.66321 -15.25377 -14.98115 -14.83923 -14.55881 -14.13413 -13.90660 -13.51320 -13.43516 -13.23959 -13.12165 -12.97259 -12.64403 -12.38887 -12.19992 -11.82179 -11.64150 -11.49717 -11.40186 -11.18031 -11.08831 -10.66681 -10.41967 -10.03884 -9.71428 -9.39764 -9.37827 -9.13010 -8.87529 -8.82690 -8.29951 -8.13312 -6.87312 -6.82883 -4.24605 0.92801 1.05372 2.53653 2.59212 2.78695 3.13701 3.18169 3.23949 3.35476 3.42817 4.03941 4.04860 4.23739 4.35599 4.45205 4.61819 4.68649 4.84625 4.93711 5.08323 5.19759 5.28323 5.35981 5.48822 5.63477 5.70300 5.84062 6.08696 6.11681 6.18057 6.23943 6.29261 6.40008 6.63928 6.67619 6.70625 6.72511 6.84933 7.00478 7.16524 7.19243 7.30881 7.54025 7.73862 8.04175 8.20872 8.29397 8.44498 8.66987 8.86929 9.51587 10.19025 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.003544 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.147824 B = 7899.195109 C = 7985.130593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.055 3.945 3 N -0.505 5.505 4 C 0.270 3.730 5 N -0.720 5.720 6 C 0.200 3.800 7 H 0.114 0.886 8 C -0.090 4.090 9 C -0.088 4.088 10 C -0.119 4.119 11 C -0.110 4.110 12 C -0.115 4.115 13 C -0.086 4.086 14 C 0.154 3.846 15 N -0.721 5.721 16 C 0.505 3.495 17 O -0.525 6.525 18 C -0.164 4.164 19 C -0.167 4.167 20 C 0.021 3.979 21 C -0.440 4.440 22 H 0.095 0.905 23 C 0.084 3.916 24 N -0.816 5.816 25 Si 0.903 3.097 26 H -0.271 1.271 27 H -0.290 1.290 28 H -0.248 1.248 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.396 0.604 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.400 0.600 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.488 20.597 -1.902 23.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 N -0.219 5.219 4 C 0.040 3.960 5 N -0.360 5.360 6 C 0.089 3.911 7 H 0.131 0.869 8 C -0.091 4.091 9 C -0.107 4.107 10 C -0.137 4.137 11 C -0.128 4.128 12 C -0.134 4.134 13 C -0.087 4.087 14 C 0.029 3.971 15 N -0.375 5.375 16 C 0.288 3.712 17 O -0.399 6.399 18 C -0.188 4.188 19 C -0.193 4.193 20 C 0.016 3.984 21 C -0.470 4.470 22 H 0.113 0.887 23 C -0.133 4.133 24 N -0.441 5.441 25 Si 0.730 3.270 26 H -0.197 1.197 27 H -0.217 1.217 28 H -0.171 1.171 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.231 0.769 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.236 0.764 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.069 20.382 -1.886 23.270 hybrid contribution 1.173 -0.509 -0.147 1.286 sum 12.242 19.873 -2.032 23.429 Atomic orbital electron populations 1.20284 0.90483 1.01108 1.00985 1.20775 0.94967 0.86859 1.06033 1.66284 1.07189 1.31346 1.17117 1.17509 0.88182 0.84497 1.05787 1.43338 1.00982 1.05678 1.86009 1.19266 0.83959 0.96061 0.91816 0.86859 1.19552 1.00930 0.94582 0.94041 1.21188 0.97406 0.98333 0.93763 1.21173 0.99229 0.93147 1.00182 1.21129 0.99279 0.98841 0.93591 1.20944 1.00621 0.96624 0.95165 1.19622 1.00167 0.94137 0.94733 1.19963 1.02809 0.83382 0.90903 1.45325 1.67615 1.06154 1.18392 1.20877 0.76612 0.84269 0.89402 1.90812 1.52244 1.24360 1.72483 1.20774 0.98878 0.92336 1.06768 1.20977 0.94717 0.96260 1.07318 1.18319 0.91607 0.94278 0.94196 1.19253 1.05558 0.90984 1.31251 0.88701 1.26044 0.96599 0.94315 0.96360 1.69711 1.39146 0.99037 1.36204 0.86434 0.80792 0.79501 0.80234 1.19672 1.21743 1.17140 0.92613 0.91145 0.93320 0.76937 0.85278 0.85584 0.85675 0.85555 0.89309 0.90362 0.76371 0.87372 0.87331 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 9.79 36.01 0.35 -1.15 16 2 C 0.06 1.36 6.86 -81.79 -0.56 0.80 16 3 N -0.50 -12.01 10.29 -8.04 -0.08 -12.10 16 4 C 0.27 6.04 7.59 -155.12 -1.18 4.86 16 5 N -0.72 -12.72 5.18 -56.72 -0.29 -13.02 16 6 C 0.20 3.02 2.33 -70.83 -0.17 2.86 16 7 H 0.11 1.82 6.40 -51.93 -0.33 1.48 16 8 C -0.09 -1.06 5.17 -104.76 -0.54 -1.60 16 9 C -0.09 -0.96 9.65 -39.50 -0.38 -1.34 16 10 C -0.12 -1.03 10.05 -39.65 -0.40 -1.43 16 11 C -0.11 -0.83 10.05 -39.65 -0.40 -1.22 16 12 C -0.12 -0.87 9.64 -39.47 -0.38 -1.25 16 13 C -0.09 -0.82 5.81 -104.79 -0.61 -1.42 16 14 C 0.15 1.26 6.99 -6.06 -0.04 1.21 16 15 N -0.72 -8.28 5.44 -63.22 -0.34 -8.62 16 16 C 0.50 8.06 7.26 -12.06 -0.09 7.97 16 17 O -0.53 -10.70 16.01 5.55 0.09 -10.61 16 18 C -0.16 -3.87 8.37 -39.64 -0.33 -4.20 16 19 C -0.17 -4.27 7.21 -39.01 -0.28 -4.55 16 20 C 0.02 0.57 5.10 -106.65 -0.54 0.02 16 21 C -0.44 -12.03 8.91 -37.85 -0.34 -12.37 16 22 H 0.10 2.66 6.55 -52.48 -0.34 2.31 16 23 C 0.08 2.25 5.42 -17.34 -0.09 2.16 16 24 N -0.82 -22.18 13.93 55.54 0.77 -21.40 16 25 Si 0.90 21.34 24.53 -169.99 -4.17 17.17 16 26 H -0.27 -6.27 6.71 56.52 0.38 -5.89 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 28 H -0.25 -6.01 6.85 56.52 0.39 -5.63 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.49 6.31 -51.93 -0.33 1.16 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.40 6.54 8.70 -40.82 -0.36 6.19 16 33 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 35 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 36 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.09 0.46 8.10 -51.93 -0.42 0.04 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.40 4.03 8.82 -40.82 -0.36 3.67 16 40 H 0.11 2.39 5.23 -52.48 -0.27 2.12 16 41 H 0.11 2.77 4.84 -52.49 -0.25 2.52 16 42 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -32.79 342.12 -9.65 -42.44 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -4.80 Total: 11.64 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -5.98 Total: -10.66 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.05 Total: -55.14 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.17 Total: 17.17 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.79 -9.65 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158903460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.240 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds