Wall clock time and date at job start Tue Mar 31 2020 14:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31485 * 119.81526 * 2 1 4 4 C 1.32741 * 121.73331 * 180.02562 * 3 2 1 5 5 N 1.38375 * 119.43328 * 179.97438 * 4 3 2 6 6 C 1.46497 * 119.99984 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.09998 * 35.81166 * 6 5 4 8 8 C 1.50397 * 109.14696 * 154.99746 * 6 5 4 9 9 C 1.38661 * 118.73182 * 279.66690 * 8 6 5 10 10 C 1.38033 * 120.33973 * 180.10931 * 9 8 6 11 11 C 1.38262 * 119.81816 * 359.97438 * 10 9 8 12 12 C 1.38014 * 119.88268 * 359.97438 * 11 10 9 13 13 C 1.37827 * 121.38341 * 99.76018 * 8 6 5 14 14 C 1.50268 * 121.65825 * 359.85669 * 13 8 6 15 15 N 1.45283 * 111.93164 * 21.56953 * 14 13 8 16 16 C 1.33354 * 123.63302 * 337.84041 * 15 14 13 17 17 O 1.21287 * 118.61658 * 180.67296 * 16 15 14 18 18 C 1.39707 * 121.13694 * 0.25013 * 4 3 2 19 19 C 1.36560 * 119.49503 * 359.49206 * 18 4 3 20 20 C 1.40751 * 119.81626 * 180.02562 * 2 1 3 21 21 C 1.41197 * 120.57103 * 359.95735 * 20 2 1 22 22 H 1.08003 * 120.00214 * 329.70850 * 21 20 2 23 23 C 1.39872 * 120.00247 * 149.71146 * 21 20 2 24 24 N 1.30892 * 120.00566 * 162.33644 * 23 21 20 25 25 Si 1.86809 * 119.99751 * 342.33582 * 23 21 20 26 26 H 1.48504 * 109.46643 * 95.35827 * 25 23 21 27 27 H 1.48492 * 109.46879 * 215.35835 * 25 23 21 28 28 H 1.48500 * 109.46853 * 335.36075 * 25 23 21 29 29 H 1.08996 * 109.46949 * 90.00128 * 1 2 3 30 30 H 1.08998 * 109.46991 * 210.00559 * 1 2 3 31 31 H 1.09004 * 109.46950 * 330.00031 * 1 2 3 32 32 H 0.96996 * 119.99513 * 359.97438 * 5 4 3 33 33 H 1.08007 * 119.82849 * 0.12141 * 9 8 6 34 34 H 1.08003 * 120.09264 * 179.97438 * 10 9 8 35 35 H 1.08005 * 120.05794 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.81472 * 179.97438 * 12 11 10 37 37 H 1.08998 * 108.97604 * 142.16985 * 14 13 8 38 38 H 1.08997 * 108.98052 * 260.96514 * 14 13 8 39 39 H 0.96996 * 118.21542 * 157.93975 * 15 14 13 40 40 H 1.08003 * 120.25341 * 179.72510 * 18 4 3 41 41 H 1.07997 * 120.80245 * 180.26602 * 19 18 4 42 42 H 0.96995 * 120.00896 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4874 1.1852 -0.0005 5 7 4.1267 2.4125 -0.0010 6 6 5.5903 2.4760 -0.0010 7 1 5.9828 1.6567 -0.6033 8 6 6.0273 3.7835 -0.6021 9 6 6.0477 3.9087 -1.9829 10 6 6.4452 5.0930 -2.5698 11 6 6.8246 6.1601 -1.7766 12 6 6.8036 6.0368 -0.4021 13 6 6.4054 4.8466 0.1895 14 6 6.3975 4.7551 1.6894 15 7 6.4550 3.3783 2.1494 16 6 6.0881 2.3347 1.4045 17 8 6.1621 1.2235 1.8849 18 6 4.2495 0.0143 -0.0063 19 6 3.6200 -1.1976 -0.0010 20 6 2.2069 -1.2212 -0.0005 21 6 1.5092 -2.4487 -0.0002 22 1 0.5405 -2.5192 0.4722 23 6 2.0725 -3.5736 -0.6116 24 7 1.6197 -4.7685 -0.3279 25 14 3.4712 -3.3706 -1.8331 26 1 4.7690 -3.5493 -1.1336 27 1 3.3429 -4.3888 -2.9062 28 1 3.4136 -2.0121 -2.4301 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 3.6057 3.2306 -0.0014 33 1 5.7507 3.0752 -2.6023 34 1 6.4600 5.1860 -3.6457 35 1 7.1367 7.0885 -2.2318 36 1 7.1005 6.8708 0.2164 37 1 7.2584 5.2962 2.0820 38 1 5.4858 5.2174 2.0679 39 1 6.7767 3.2082 3.0485 40 1 5.3282 0.0671 -0.0111 41 1 4.1883 -2.1159 -0.0010 42 1 2.0105 -5.5486 -0.7515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158903460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:17 Heat of formation + Delta-G solvation = 9.899051 kcal Electronic energy + Delta-G solvation = -26711.865252 eV Core-core repulsion = 23041.375833 eV Total energy + Delta-G solvation = -3670.489419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.05648 -40.62328 -39.74106 -37.11028 -36.51857 -35.48005 -33.45096 -33.29949 -32.22674 -31.38332 -29.09139 -28.59255 -26.48002 -25.79958 -23.70255 -23.65177 -23.11829 -22.06065 -20.02050 -19.47205 -18.80669 -18.22806 -18.10149 -17.68849 -16.99683 -16.54866 -16.39115 -15.91901 -15.55403 -15.42631 -15.23344 -14.97998 -14.83230 -14.55589 -14.48273 -14.40418 -13.92033 -13.78507 -13.47324 -13.37185 -13.34502 -13.03642 -12.87606 -12.57933 -12.29897 -12.17057 -11.96963 -11.68002 -11.60456 -11.24440 -10.52395 -10.34941 -10.21024 -10.06354 -9.84664 -9.59259 -8.84154 -8.67350 -6.27268 0.18667 0.38869 0.62135 0.80231 1.23524 1.32193 1.36301 1.43954 2.11234 2.19284 2.47766 2.66911 2.90237 3.29746 3.42398 3.57157 3.59806 3.84785 3.98545 4.17662 4.21893 4.25843 4.42190 4.48269 4.52953 4.55982 4.60618 4.68369 4.91824 4.93559 4.97860 5.02070 5.05620 5.12527 5.30590 5.41900 5.46736 5.48258 5.57399 5.69216 5.76662 5.80414 6.00790 6.13054 6.24352 6.36348 6.51194 6.82477 6.88500 7.10014 7.61216 8.23939 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.003544 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.147824 B = 7899.195109 C = 7985.130593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.051 3.949 3 N -0.515 5.515 4 C 0.290 3.710 5 N -0.707 5.707 6 C 0.200 3.800 7 H 0.095 0.905 8 C -0.112 4.112 9 C -0.107 4.107 10 C -0.123 4.123 11 C -0.103 4.103 12 C -0.106 4.106 13 C -0.090 4.090 14 C 0.146 3.854 15 N -0.705 5.705 16 C 0.500 3.500 17 O -0.582 6.582 18 C -0.178 4.178 19 C -0.174 4.174 20 C -0.006 4.006 21 C -0.465 4.465 22 H 0.074 0.926 23 C 0.051 3.949 24 N -0.852 5.852 25 Si 0.951 3.049 26 H -0.266 1.266 27 H -0.272 1.272 28 H -0.261 1.261 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.404 0.596 33 H 0.115 0.885 34 H 0.143 0.857 35 H 0.157 0.843 36 H 0.164 0.836 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.409 0.591 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.387 25.172 -2.283 28.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.090 4.090 3 N -0.231 5.231 4 C 0.058 3.942 5 N -0.347 5.347 6 C 0.090 3.910 7 H 0.113 0.887 8 C -0.113 4.113 9 C -0.125 4.125 10 C -0.141 4.141 11 C -0.121 4.121 12 C -0.124 4.124 13 C -0.091 4.091 14 C 0.023 3.977 15 N -0.357 5.357 16 C 0.284 3.716 17 O -0.461 6.461 18 C -0.202 4.202 19 C -0.201 4.201 20 C -0.011 4.011 21 C -0.496 4.496 22 H 0.092 0.908 23 C -0.162 4.162 24 N -0.480 5.480 25 Si 0.776 3.224 26 H -0.192 1.192 27 H -0.198 1.198 28 H -0.185 1.185 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.240 0.760 33 H 0.133 0.867 34 H 0.161 0.839 35 H 0.175 0.825 36 H 0.181 0.819 37 H 0.150 0.850 38 H 0.113 0.887 39 H 0.246 0.754 40 H 0.137 0.863 41 H 0.122 0.878 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.990 25.041 -2.259 28.301 hybrid contribution 0.714 -1.550 0.007 1.707 sum 13.705 23.491 -2.251 27.290 Atomic orbital electron populations 1.20294 0.88280 1.01757 1.02026 1.21327 0.96724 0.86639 1.04277 1.66486 1.07576 1.30719 1.18320 1.17887 0.88036 0.86040 1.02211 1.43421 1.02445 1.04211 1.84602 1.19283 0.81925 0.98006 0.91757 0.88697 1.19303 1.03695 0.93713 0.94611 1.21192 0.98713 0.99155 0.93460 1.21426 0.98635 0.92614 1.01404 1.21570 0.97428 0.99387 0.93715 1.21339 0.98902 0.96545 0.95644 1.19829 0.99867 0.94195 0.95244 1.20394 1.05581 0.81364 0.90362 1.45268 1.65327 1.06834 1.18241 1.20905 0.76608 0.84438 0.89685 1.90788 1.55073 1.26658 1.73537 1.20921 0.99642 0.92238 1.07409 1.21099 0.94744 0.96912 1.07313 1.18444 0.92025 0.94674 0.95952 1.19204 1.05320 0.92123 1.32966 0.90797 1.26570 0.98363 0.93985 0.97324 1.69728 1.40858 0.99624 1.37753 0.85704 0.78802 0.78979 0.78933 1.19238 1.19807 1.18532 0.91270 0.91795 0.91253 0.75976 0.86720 0.83903 0.82525 0.81850 0.85037 0.88719 0.75359 0.86291 0.87850 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.80 9.79 71.24 0.70 -2.10 16 2 C 0.05 2.54 6.86 43.23 0.30 2.84 16 3 N -0.52 -24.45 10.29 -179.36 -1.85 -26.30 16 4 C 0.29 13.05 7.59 133.31 1.01 14.06 16 5 N -0.71 -24.64 5.18 -333.35 -1.73 -26.37 16 6 C 0.20 6.00 2.33 43.12 0.10 6.10 16 7 H 0.10 3.16 6.40 -2.39 -0.02 3.14 16 8 C -0.11 -2.46 5.17 -19.96 -0.10 -2.56 16 9 C -0.11 -2.17 9.65 22.32 0.22 -1.95 16 10 C -0.12 -1.76 10.05 22.23 0.22 -1.54 16 11 C -0.10 -1.04 10.05 22.22 0.22 -0.82 16 12 C -0.11 -1.03 9.64 22.34 0.22 -0.82 16 13 C -0.09 -1.38 5.81 -19.97 -0.12 -1.50 16 14 C 0.15 1.75 6.99 85.73 0.60 2.34 16 15 N -0.70 -14.57 5.44 -473.09 -2.58 -17.15 16 16 C 0.50 15.70 7.26 87.59 0.64 16.34 16 17 O -0.58 -24.17 16.01 -3.05 -0.05 -24.22 16 18 C -0.18 -8.61 8.37 22.23 0.19 -8.42 16 19 C -0.17 -9.21 7.21 22.64 0.16 -9.05 16 20 C -0.01 -0.31 5.10 -21.18 -0.11 -0.41 16 21 C -0.47 -26.59 8.91 23.39 0.21 -26.38 16 22 H 0.07 4.39 6.55 -2.91 -0.02 4.38 16 23 C 0.05 2.84 5.42 85.23 0.46 3.30 16 24 N -0.85 -47.98 13.93 21.82 0.30 -47.68 16 25 Si 0.95 45.17 24.53 68.60 1.68 46.85 16 26 H -0.27 -12.33 6.71 99.48 0.67 -11.67 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 28 H -0.26 -12.81 6.85 99.48 0.68 -12.13 16 29 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.06 2.78 6.31 -2.39 -0.02 2.76 16 31 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.40 12.83 8.70 -92.71 -0.81 12.03 16 33 H 0.11 2.55 8.06 -2.91 -0.02 2.52 16 34 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 36 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 37 H 0.13 0.56 8.10 -2.39 -0.02 0.54 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.41 7.33 8.82 -92.71 -0.82 6.52 16 40 H 0.12 5.44 5.23 -2.91 -0.02 5.42 16 41 H 0.10 5.47 4.84 -2.91 -0.01 5.45 16 42 H 0.29 14.84 8.30 -92.71 -0.77 14.07 16 Total: -1.00 -75.09 342.12 0.11 -74.98 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: -0.59 Total: 30.46 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 4.91 Total: -10.58 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -5.84 Total: -117.49 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.68 Total: 46.85 kcal Total: -75.09 0.11 -74.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158903460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.879 kcal (2) G-P(sol) polarization free energy of solvation -75.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds