Wall clock time and date at job start Tue Mar 31 2020 14:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31486 * 119.81353 * 2 1 4 4 C 1.32747 * 121.72819 * 180.27294 * 3 2 1 5 5 N 1.38367 * 119.43043 * 179.75020 * 4 3 2 6 6 C 1.46497 * 120.00243 * 179.72000 * 5 4 3 7 7 H 1.09008 * 109.14079 * 324.21553 * 6 5 4 8 8 C 1.50394 * 109.15104 * 205.00259 * 6 5 4 9 9 C 1.38671 * 118.73015 * 38.95271 * 8 6 5 10 10 C 1.38041 * 120.33484 * 179.83963 * 9 8 6 11 11 C 1.38259 * 119.81969 * 0.53626 * 10 9 8 12 12 C 1.38008 * 119.88332 * 359.42316 * 11 10 9 13 13 C 1.37820 * 121.38868 * 219.00347 * 8 6 5 14 14 C 1.50274 * 121.66505 * 359.79353 * 13 8 6 15 15 N 1.45276 * 111.99488 * 21.52521 * 14 13 8 16 16 C 1.33437 * 123.56588 * 338.01013 * 15 14 13 17 17 O 1.21277 * 118.58023 * 180.57957 * 16 15 14 18 18 C 1.39708 * 121.13662 * 359.46674 * 4 3 2 19 19 C 1.36557 * 119.49689 * 0.26469 * 18 4 3 20 20 C 1.40748 * 119.81652 * 179.75204 * 2 1 3 21 21 C 1.41198 * 120.57031 * 359.97124 * 20 2 1 22 22 H 1.08000 * 120.00432 * 334.77502 * 21 20 2 23 23 C 1.39874 * 120.00132 * 154.77945 * 21 20 2 24 24 N 1.30905 * 119.99591 * 343.69297 * 23 21 20 25 25 Si 1.86803 * 120.00350 * 163.70102 * 23 21 20 26 26 H 1.48501 * 109.46768 * 59.99679 * 25 23 21 27 27 H 1.48502 * 109.47042 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46957 * 299.99757 * 25 23 21 29 29 H 1.09004 * 109.47379 * 270.25309 * 1 2 3 30 30 H 1.09006 * 109.47626 * 30.25302 * 1 2 3 31 31 H 1.08999 * 109.47407 * 150.25261 * 1 2 3 32 32 H 0.97004 * 119.99928 * 359.72827 * 5 4 3 33 33 H 1.08000 * 119.82744 * 0.09813 * 9 8 6 34 34 H 1.08005 * 120.08626 * 180.25395 * 10 9 8 35 35 H 1.08002 * 120.05880 * 179.70286 * 11 10 9 36 36 H 1.07997 * 119.81513 * 180.26942 * 12 11 10 37 37 H 1.09001 * 108.97468 * 142.17045 * 14 13 8 38 38 H 1.09001 * 108.97355 * 260.87205 * 14 13 8 39 39 H 0.97005 * 118.21688 * 157.99921 * 15 14 13 40 40 H 1.08000 * 120.24630 * 180.28186 * 18 4 3 41 41 H 1.08000 * 120.80040 * 180.02562 * 19 18 4 42 42 H 0.97004 * 119.99258 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1852 -0.0054 5 7 4.1266 2.4124 -0.0104 6 6 5.5902 2.4759 -0.0101 7 1 5.9833 1.6594 0.5957 8 6 6.0270 3.7863 0.5849 9 6 5.3297 4.2898 1.6727 10 6 5.7042 5.4879 2.2469 11 6 6.7731 6.1947 1.7278 12 6 7.4683 5.6939 0.6459 13 6 7.0969 4.4868 0.0711 14 6 7.8827 3.9769 -1.1040 15 7 7.1242 3.0209 -1.8921 16 6 6.0885 2.3280 -1.4148 17 8 5.5261 1.5447 -2.1504 18 6 4.2494 0.0142 -0.0002 19 6 3.6199 -1.1976 0.0051 20 6 2.2068 -1.2211 0.0053 21 6 1.5091 -2.4487 0.0112 22 1 0.5068 -2.4983 0.4105 23 6 2.1160 -3.6006 -0.4999 24 7 3.1753 -3.4989 -1.2622 25 14 1.4147 -5.2840 -0.0951 26 1 0.0154 -5.3681 -0.5851 27 1 2.2335 -6.3329 -0.7543 28 1 1.4374 -5.4890 1.3755 29 1 -0.3634 0.0045 1.0277 30 1 -0.3634 0.8877 -0.5178 31 1 -0.3634 -0.8922 -0.5099 32 1 3.6056 3.2306 -0.0139 33 1 4.4920 3.7397 2.0751 34 1 5.1608 5.8744 3.0965 35 1 7.0665 7.1349 2.1711 36 1 8.3058 6.2448 0.2440 37 1 8.1587 4.8194 -1.7382 38 1 8.7910 3.4959 -0.7410 39 1 7.3847 2.8787 -2.8157 40 1 5.3281 0.0671 -0.0001 41 1 4.1882 -2.1160 0.0096 42 1 3.5964 -4.2978 -1.6164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158903461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:20 Heat of formation + Delta-G solvation = 12.252917 kcal Electronic energy + Delta-G solvation = -26598.635169 eV Core-core repulsion = 22928.247821 eV Total energy + Delta-G solvation = -3670.387348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.00017 -40.36442 -39.69830 -37.11901 -36.39740 -35.48898 -33.28589 -32.65372 -32.18528 -31.10360 -28.96092 -28.50554 -26.44227 -26.03405 -23.66269 -23.14572 -23.04360 -21.86912 -20.05688 -19.12973 -18.72442 -18.18304 -18.12382 -17.32282 -16.86781 -16.72266 -16.09403 -15.84246 -15.43305 -15.32574 -15.13841 -15.12500 -14.68054 -14.46240 -14.38473 -13.92992 -13.72030 -13.50248 -13.39978 -13.25710 -13.17306 -12.89196 -12.78385 -12.60745 -12.22571 -12.20468 -11.97124 -11.58981 -11.44386 -11.07885 -10.43281 -10.30807 -10.07023 -9.91388 -9.74426 -9.54737 -8.66549 -8.39711 -6.11077 0.24691 0.41122 0.89709 1.12478 1.40352 1.45819 1.52439 1.59296 2.19116 2.25311 2.56116 2.81249 2.84354 3.34468 3.55658 3.64400 3.78799 3.95121 4.08711 4.25138 4.29669 4.45842 4.54139 4.58359 4.63322 4.65891 4.69057 4.72949 4.95895 5.00523 5.05894 5.09182 5.21344 5.35989 5.41545 5.47347 5.53523 5.59610 5.65242 5.83022 5.87052 6.00177 6.03617 6.16444 6.42851 6.56802 6.80822 6.95000 7.06320 7.18430 7.83645 8.42751 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.003258 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.529585 B = 8591.647713 C = 9323.685822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.016 3.984 3 N -0.531 5.531 4 C 0.295 3.705 5 N -0.709 5.709 6 C 0.201 3.799 7 H 0.102 0.898 8 C -0.108 4.108 9 C -0.112 4.112 10 C -0.121 4.121 11 C -0.107 4.107 12 C -0.103 4.103 13 C -0.096 4.096 14 C 0.146 3.854 15 N -0.710 5.710 16 C 0.491 3.509 17 O -0.576 6.576 18 C -0.192 4.192 19 C -0.115 4.115 20 C 0.005 3.995 21 C -0.482 4.482 22 H 0.087 0.913 23 C 0.028 3.972 24 N -0.842 5.842 25 Si 0.984 3.016 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.259 1.259 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.398 0.602 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.129 0.871 38 H 0.103 0.897 39 H 0.409 0.591 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.790 18.201 4.987 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.122 4.122 3 N -0.247 5.247 4 C 0.062 3.938 5 N -0.348 5.348 6 C 0.091 3.909 7 H 0.119 0.881 8 C -0.109 4.109 9 C -0.130 4.130 10 C -0.139 4.139 11 C -0.125 4.125 12 C -0.121 4.121 13 C -0.097 4.097 14 C 0.023 3.977 15 N -0.363 5.363 16 C 0.275 3.725 17 O -0.454 6.454 18 C -0.215 4.215 19 C -0.142 4.142 20 C 0.000 4.000 21 C -0.513 4.513 22 H 0.105 0.895 23 C -0.184 4.184 24 N -0.469 5.469 25 Si 0.805 3.195 26 H -0.181 1.181 27 H -0.199 1.199 28 H -0.184 1.184 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.234 0.766 33 H 0.131 0.869 34 H 0.160 0.840 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.146 0.854 38 H 0.120 0.880 39 H 0.246 0.754 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.269 18.362 4.694 22.577 hybrid contribution 0.146 -1.753 -0.532 1.838 sum 12.415 16.608 4.162 21.149 Atomic orbital electron populations 1.20217 0.88701 1.01489 1.01428 1.21304 0.96569 0.87134 1.07178 1.66388 1.07702 1.31133 1.19516 1.17777 0.88059 0.85823 1.02169 1.43320 1.02476 1.04230 1.84765 1.19004 0.82106 0.98020 0.91821 0.88116 1.19360 0.98492 0.94909 0.98096 1.21148 0.99435 0.97160 0.95298 1.21427 0.98003 0.94112 1.00383 1.21555 0.94557 1.00531 0.95843 1.21329 1.00781 0.93732 0.96295 1.19796 0.96051 0.96064 0.97822 1.20407 0.93124 0.92998 0.91125 1.45330 1.31986 1.42325 1.16637 1.21103 0.80316 0.79869 0.91182 1.90849 1.57368 1.37874 1.59278 1.20752 0.98354 0.92755 1.09677 1.21251 0.95307 0.96265 1.01355 1.18491 0.92503 0.94301 0.94745 1.19569 1.02178 0.92587 1.36939 0.89532 1.26805 0.94595 1.05102 0.91907 1.69940 1.19925 1.32676 1.24371 0.85221 0.79175 0.75525 0.79563 1.18115 1.19859 1.18351 0.91617 0.92295 0.91557 0.76620 0.86919 0.84006 0.82472 0.81678 0.85354 0.87963 0.75438 0.88177 0.87218 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.72 9.58 71.23 0.68 -2.04 16 2 C 0.02 0.88 6.86 43.22 0.30 1.18 16 3 N -0.53 -28.02 10.29 -179.37 -1.85 -29.87 16 4 C 0.30 14.83 7.15 133.31 0.95 15.78 16 5 N -0.71 -28.44 4.33 -333.34 -1.44 -29.88 16 6 C 0.20 6.69 2.52 43.12 0.11 6.80 16 7 H 0.10 3.55 6.44 -2.38 -0.02 3.54 16 8 C -0.11 -2.65 5.51 -19.96 -0.11 -2.76 16 9 C -0.11 -2.60 8.94 22.33 0.20 -2.40 16 10 C -0.12 -2.01 10.05 22.23 0.22 -1.78 16 11 C -0.11 -1.26 10.05 22.22 0.22 -1.04 16 12 C -0.10 -1.16 9.64 22.34 0.22 -0.95 16 13 C -0.10 -1.66 5.81 -19.97 -0.12 -1.77 16 14 C 0.15 1.93 6.99 85.73 0.60 2.52 16 15 N -0.71 -16.23 5.45 -472.99 -2.58 -18.81 16 16 C 0.49 17.15 7.37 87.58 0.65 17.79 16 17 O -0.58 -27.20 15.81 -3.02 -0.05 -27.25 16 18 C -0.19 -10.18 8.13 22.23 0.18 -10.00 16 19 C -0.12 -6.67 8.73 22.64 0.20 -6.48 16 20 C 0.00 0.26 5.58 -21.18 -0.12 0.15 16 21 C -0.48 -26.82 8.14 23.39 0.19 -26.63 16 22 H 0.09 4.51 6.86 -2.91 -0.02 4.49 16 23 C 0.03 1.51 5.19 85.23 0.44 1.95 16 24 N -0.84 -47.33 10.95 21.82 0.24 -47.09 16 25 Si 0.98 39.98 29.59 68.60 2.03 42.01 16 26 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 27 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 28 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 29 H 0.07 2.64 8.14 -2.38 -0.02 2.63 16 30 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.07 2.95 6.76 -2.39 -0.02 2.93 16 32 H 0.40 15.03 8.24 -92.71 -0.76 14.27 16 33 H 0.11 3.00 7.54 -2.91 -0.02 2.98 16 34 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 37 H 0.13 0.76 8.10 -2.39 -0.02 0.74 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.41 8.28 8.82 -92.70 -0.82 7.46 16 40 H 0.10 4.96 5.92 -2.91 -0.02 4.94 16 41 H 0.11 6.56 6.26 -2.91 -0.02 6.54 16 42 H 0.28 14.59 8.30 -92.71 -0.77 13.82 16 Total: -1.00 -79.11 345.79 0.68 -78.43 By element: Atomic # 1 Polarization: 42.62 SS G_CDS: -0.49 Total: 42.13 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 4.81 Total: -9.67 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -5.63 Total: -125.65 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.05 Total: -27.25 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -79.11 0.68 -78.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158903461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.680 kcal (2) G-P(sol) polarization free energy of solvation -79.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds