Wall clock time and date at job start Tue Mar 31 2020 14:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38680 * 119.27863 * 2 1 4 4 C 1.38006 * 119.62674 * 179.97438 * 3 2 1 5 5 C 1.41010 * 118.27929 * 359.97438 * 4 3 2 6 6 C 1.41019 * 120.70156 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99918 * 204.90946 * 6 5 4 8 8 C 1.39955 * 120.00207 * 24.91520 * 6 5 4 9 9 N 1.30868 * 119.99929 * 14.50345 * 8 6 5 10 10 Si 1.86801 * 119.99991 * 194.51167 * 8 6 5 11 11 H 1.48502 * 109.46953 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47381 * 119.99604 * 10 8 6 13 13 H 1.48501 * 109.46698 * 239.99557 * 10 8 6 14 14 C 1.41704 * 118.59217 * 0.02562 * 5 4 3 15 15 N 1.38088 * 119.90875 * 179.97438 * 14 5 4 16 16 C 1.46496 * 120.00098 * 179.97438 * 15 14 5 17 17 H 1.09001 * 109.09466 * 35.81597 * 16 15 14 18 18 C 1.50398 * 109.14425 * 154.99850 * 16 15 14 19 19 C 1.38666 * 118.73067 * 279.66887 * 18 16 15 20 20 C 1.38029 * 120.33655 * 180.11203 * 19 18 16 21 21 C 1.38267 * 119.82297 * 0.02562 * 20 19 18 22 22 C 1.38019 * 119.87884 * 359.97438 * 21 20 19 23 23 C 1.37824 * 121.38580 * 99.76124 * 18 16 15 24 24 C 1.50275 * 121.65225 * 359.86464 * 23 18 16 25 25 N 1.45270 * 111.93999 * 21.55988 * 24 23 18 26 26 C 1.33368 * 123.63030 * 337.84624 * 25 24 23 27 27 O 1.21280 * 118.61144 * 180.66708 * 26 25 24 28 28 N 1.31972 * 119.27380 * 180.24321 * 2 1 3 29 29 H 1.09008 * 109.46954 * 89.99872 * 1 2 3 30 30 H 1.08994 * 109.47669 * 210.00114 * 1 2 3 31 31 H 1.09008 * 109.46918 * 330.00485 * 1 2 3 32 32 H 1.08003 * 120.18524 * 0.02562 * 3 2 1 33 33 H 1.07997 * 120.85813 * 180.02562 * 4 3 2 34 34 H 0.96992 * 119.99793 * 180.02562 * 9 8 6 35 35 H 0.97004 * 119.99399 * 0.02562 * 15 14 5 36 36 H 1.08003 * 119.83008 * 0.12183 * 19 18 16 37 37 H 1.08004 * 120.09552 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.06302 * 179.97438 * 21 20 19 39 39 H 1.07994 * 119.81364 * 179.97438 * 22 21 20 40 40 H 1.09000 * 108.97592 * 142.16871 * 24 23 18 41 41 H 1.09001 * 108.96878 * 260.95007 * 24 23 18 42 42 H 0.96991 * 118.22204 * 157.94383 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5652 1.2180 0.0005 5 6 4.2408 -0.0197 0.0016 6 6 5.6501 -0.0707 0.0017 7 1 6.1590 -0.9384 -0.3915 8 6 6.3892 1.0029 0.5113 9 7 5.7989 1.9174 1.2378 10 14 8.2184 1.1306 0.1544 11 1 8.6409 -0.0209 -0.6828 12 1 8.4942 2.3973 -0.5698 13 1 8.9742 1.1165 1.4326 14 6 3.4736 -1.2111 0.0016 15 7 4.1072 -2.4380 0.0021 16 6 3.3160 -3.6710 0.0026 17 1 2.4205 -3.5202 -0.6003 18 6 4.1334 -4.7818 -0.5974 19 6 4.2245 -4.8713 -1.9782 20 6 4.9639 -5.8789 -2.5642 21 6 5.6164 -6.8038 -1.7701 22 6 5.5262 -6.7154 -0.3957 23 6 4.7842 -5.7027 0.1949 24 6 4.7132 -5.6426 1.6948 25 7 3.5546 -4.8962 2.1538 26 6 2.9132 -3.9956 1.4081 27 8 1.9620 -3.4158 1.8877 28 7 2.1523 -1.1512 -0.0049 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 1.6364 2.1399 0.0004 33 1 4.1135 2.1485 0.0010 34 1 6.3111 2.6617 1.5907 35 1 5.0762 -2.4834 0.0029 36 1 3.7146 -4.1489 -2.5983 37 1 5.0319 -5.9452 -3.6400 38 1 6.1956 -7.5941 -2.2245 39 1 6.0359 -7.4387 0.2234 40 1 4.6595 -6.6578 2.0880 41 1 5.6162 -5.1636 2.0733 42 1 3.2298 -5.0606 3.0529 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158903761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:25 Heat of formation + Delta-G solvation = 27.097859 kcal Electronic energy + Delta-G solvation = -27130.633598 eV Core-core repulsion = 23460.889975 eV Total energy + Delta-G solvation = -3669.743623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.62551 -38.59467 -38.28856 -35.20412 -34.97591 -34.08284 -31.79525 -31.16310 -30.57505 -29.34771 -27.86663 -26.97374 -25.20563 -23.78936 -22.48176 -22.12933 -20.87896 -20.66975 -18.79751 -17.33699 -17.17734 -16.90706 -16.18527 -16.08218 -15.39242 -15.06042 -14.91792 -14.35971 -14.27611 -13.80814 -13.68269 -13.47209 -13.16326 -13.02489 -12.86756 -12.71333 -12.41258 -11.99652 -11.82550 -11.62821 -11.42725 -11.38725 -11.26171 -11.19421 -10.95426 -10.74363 -10.48481 -9.84495 -9.73287 -9.26402 -9.09187 -8.89378 -8.78482 -8.60430 -8.00594 -7.74469 -6.77811 -6.52139 -4.21088 1.19039 1.29451 2.72864 2.98872 3.06338 3.10226 3.13399 3.26607 3.49956 3.70961 3.92681 4.44132 4.54346 4.66922 4.72887 4.83639 4.87292 5.09809 5.18662 5.34888 5.45897 5.60441 5.70337 5.78943 5.89014 5.94135 6.00536 6.24661 6.32613 6.41833 6.51319 6.52760 6.54310 6.70676 6.82447 6.88946 6.97736 7.05774 7.15158 7.26596 7.55453 7.65519 7.82256 8.03518 8.26961 8.43964 8.63342 8.67148 8.81334 8.98774 9.84593 10.23415 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009864 B = 0.005331 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.825291 B = 5250.957448 C = 6794.446601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.032 3.968 3 C -0.184 4.184 4 C -0.121 4.121 5 C 0.033 3.967 6 C -0.456 4.456 7 H 0.073 0.927 8 C 0.074 3.926 9 N -0.800 5.800 10 Si 0.906 3.094 11 H -0.262 1.262 12 H -0.273 1.273 13 H -0.276 1.276 14 C 0.297 3.703 15 N -0.708 5.708 16 C 0.200 3.800 17 H 0.118 0.882 18 C -0.087 4.087 19 C -0.089 4.089 20 C -0.121 4.121 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.087 4.087 24 C 0.155 3.845 25 N -0.727 5.727 26 C 0.507 3.493 27 O -0.517 6.517 28 N -0.504 5.504 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.278 0.722 35 H 0.406 0.594 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.058 -14.575 -3.246 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C -0.206 4.206 4 C -0.147 4.147 5 C 0.027 3.973 6 C -0.487 4.487 7 H 0.091 0.909 8 C -0.142 4.142 9 N -0.427 5.427 10 Si 0.731 3.269 11 H -0.185 1.185 12 H -0.198 1.198 13 H -0.202 1.202 14 C 0.061 3.939 15 N -0.349 5.349 16 C 0.090 3.910 17 H 0.135 0.865 18 C -0.088 4.088 19 C -0.108 4.108 20 C -0.139 4.139 21 C -0.132 4.132 22 C -0.135 4.135 23 C -0.088 4.088 24 C 0.031 3.969 25 N -0.382 5.382 26 C 0.291 3.709 27 O -0.389 6.389 28 N -0.220 5.220 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.146 0.854 34 H 0.089 0.911 35 H 0.244 0.756 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.988 -14.780 -3.092 15.132 hybrid contribution 1.855 0.827 0.365 2.063 sum 2.843 -13.953 -2.727 14.499 Atomic orbital electron populations 1.20292 0.91816 1.00966 1.00153 1.19983 0.94387 0.87856 1.08089 1.21275 0.95383 0.96704 1.07283 1.21414 0.92100 0.98289 1.02904 1.17874 0.93824 0.89909 0.95740 1.19146 0.90752 1.02597 1.36235 0.90866 1.25799 1.00710 0.94918 0.92776 1.69812 1.38136 1.10442 1.24270 0.86298 0.82368 0.79283 0.78971 1.18548 1.19816 1.20165 1.18327 0.88181 0.84874 1.02556 1.43533 1.06997 0.99733 1.84635 1.19204 0.95989 0.84162 0.91634 0.86472 1.19750 0.98901 0.96158 0.94020 1.21175 0.98056 0.97646 0.93899 1.21139 0.97653 0.95120 0.99980 1.21075 0.99460 0.99114 0.93600 1.20920 0.99512 0.97906 0.95117 1.19639 0.98389 0.95945 0.94806 1.19912 0.89434 0.96683 0.90897 1.45401 1.32103 1.42359 1.18299 1.20873 0.82508 0.78115 0.89426 1.90778 1.27499 1.48335 1.72314 1.66339 1.07965 1.29684 1.18059 0.93350 0.92425 0.93015 0.88744 0.85383 0.91074 0.75586 0.85401 0.85814 0.85915 0.85772 0.89695 0.90584 0.76834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 10.15 36.00 0.37 -1.11 16 2 C 0.03 0.79 6.79 -82.37 -0.56 0.23 16 3 C -0.18 -4.51 9.69 -39.50 -0.38 -4.90 16 4 C -0.12 -3.19 8.79 -38.62 -0.34 -3.53 16 5 C 0.03 0.88 5.60 -106.47 -0.60 0.29 16 6 C -0.46 -11.66 8.54 -37.89 -0.32 -11.98 16 7 H 0.07 1.76 6.67 -52.49 -0.35 1.41 16 8 C 0.07 1.84 5.23 -17.32 -0.09 1.75 16 9 N -0.80 -20.70 10.83 55.55 0.60 -20.10 16 10 Si 0.91 18.45 29.58 -169.99 -5.03 13.43 16 11 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 14 C 0.30 7.44 7.46 -155.03 -1.16 6.28 16 15 N -0.71 -14.93 5.08 -56.34 -0.29 -15.21 16 16 C 0.20 3.68 2.50 -70.83 -0.18 3.50 16 17 H 0.12 2.35 7.50 -51.93 -0.39 1.96 16 18 C -0.09 -1.27 5.17 -104.76 -0.54 -1.82 16 19 C -0.09 -1.18 9.65 -39.50 -0.38 -1.56 16 20 C -0.12 -1.31 10.05 -39.65 -0.40 -1.70 16 21 C -0.11 -1.10 10.05 -39.65 -0.40 -1.50 16 22 C -0.12 -1.15 9.64 -39.47 -0.38 -1.53 16 23 C -0.09 -1.06 5.81 -104.79 -0.61 -1.67 16 24 C 0.16 1.70 6.99 -6.06 -0.04 1.66 16 25 N -0.73 -10.44 5.44 -63.22 -0.34 -10.78 16 26 C 0.51 9.69 7.27 -12.06 -0.09 9.60 16 27 O -0.52 -12.14 17.27 5.56 0.10 -12.04 16 28 N -0.50 -12.72 8.53 -8.11 -0.07 -12.79 16 29 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.92 8.07 -51.92 -0.42 0.50 16 32 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 33 H 0.13 3.46 6.17 -52.49 -0.32 3.14 16 34 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 35 H 0.41 8.33 6.78 -40.82 -0.28 8.05 16 36 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 37 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.40 5.06 8.82 -40.82 -0.36 4.70 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -32.19 352.56 -10.87 -43.07 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -5.06 Total: 17.12 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -6.10 Total: -8.00 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.10 Total: -58.88 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.10 Total: -12.04 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.19 -10.87 -43.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158903761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.164 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds