Wall clock time and date at job start Tue Mar 31 2020 14:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38680 * 119.27863 * 2 1 4 4 C 1.38006 * 119.62674 * 179.97438 * 3 2 1 5 5 C 1.41010 * 118.27929 * 359.97438 * 4 3 2 6 6 C 1.41019 * 120.70156 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99918 * 204.90946 * 6 5 4 8 8 C 1.39955 * 120.00207 * 24.91520 * 6 5 4 9 9 N 1.30868 * 119.99929 * 14.50345 * 8 6 5 10 10 Si 1.86801 * 119.99991 * 194.51167 * 8 6 5 11 11 H 1.48502 * 109.46953 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47381 * 119.99604 * 10 8 6 13 13 H 1.48501 * 109.46698 * 239.99557 * 10 8 6 14 14 C 1.41704 * 118.59217 * 0.02562 * 5 4 3 15 15 N 1.38088 * 119.90875 * 179.97438 * 14 5 4 16 16 C 1.46496 * 120.00098 * 179.97438 * 15 14 5 17 17 H 1.09001 * 109.09466 * 35.81597 * 16 15 14 18 18 C 1.50398 * 109.14425 * 154.99850 * 16 15 14 19 19 C 1.38666 * 118.73067 * 279.66887 * 18 16 15 20 20 C 1.38029 * 120.33655 * 180.11203 * 19 18 16 21 21 C 1.38267 * 119.82297 * 0.02562 * 20 19 18 22 22 C 1.38019 * 119.87884 * 359.97438 * 21 20 19 23 23 C 1.37824 * 121.38580 * 99.76124 * 18 16 15 24 24 C 1.50275 * 121.65225 * 359.86464 * 23 18 16 25 25 N 1.45270 * 111.93999 * 21.55988 * 24 23 18 26 26 C 1.33368 * 123.63030 * 337.84624 * 25 24 23 27 27 O 1.21280 * 118.61144 * 180.66708 * 26 25 24 28 28 N 1.31972 * 119.27380 * 180.24321 * 2 1 3 29 29 H 1.09008 * 109.46954 * 89.99872 * 1 2 3 30 30 H 1.08994 * 109.47669 * 210.00114 * 1 2 3 31 31 H 1.09008 * 109.46918 * 330.00485 * 1 2 3 32 32 H 1.08003 * 120.18524 * 0.02562 * 3 2 1 33 33 H 1.07997 * 120.85813 * 180.02562 * 4 3 2 34 34 H 0.96992 * 119.99793 * 180.02562 * 9 8 6 35 35 H 0.97004 * 119.99399 * 0.02562 * 15 14 5 36 36 H 1.08003 * 119.83008 * 0.12183 * 19 18 16 37 37 H 1.08004 * 120.09552 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.06302 * 179.97438 * 21 20 19 39 39 H 1.07994 * 119.81364 * 179.97438 * 22 21 20 40 40 H 1.09000 * 108.97592 * 142.16871 * 24 23 18 41 41 H 1.09001 * 108.96878 * 260.95007 * 24 23 18 42 42 H 0.96991 * 118.22204 * 157.94383 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5652 1.2180 0.0005 5 6 4.2408 -0.0197 0.0016 6 6 5.6501 -0.0707 0.0017 7 1 6.1590 -0.9384 -0.3915 8 6 6.3892 1.0029 0.5113 9 7 5.7989 1.9174 1.2378 10 14 8.2184 1.1306 0.1544 11 1 8.6409 -0.0209 -0.6828 12 1 8.4942 2.3973 -0.5698 13 1 8.9742 1.1165 1.4326 14 6 3.4736 -1.2111 0.0016 15 7 4.1072 -2.4380 0.0021 16 6 3.3160 -3.6710 0.0026 17 1 2.4205 -3.5202 -0.6003 18 6 4.1334 -4.7818 -0.5974 19 6 4.2245 -4.8713 -1.9782 20 6 4.9639 -5.8789 -2.5642 21 6 5.6164 -6.8038 -1.7701 22 6 5.5262 -6.7154 -0.3957 23 6 4.7842 -5.7027 0.1949 24 6 4.7132 -5.6426 1.6948 25 7 3.5546 -4.8962 2.1538 26 6 2.9132 -3.9956 1.4081 27 8 1.9620 -3.4158 1.8877 28 7 2.1523 -1.1512 -0.0049 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 1.6364 2.1399 0.0004 33 1 4.1135 2.1485 0.0010 34 1 6.3111 2.6617 1.5907 35 1 5.0762 -2.4834 0.0029 36 1 3.7146 -4.1489 -2.5983 37 1 5.0319 -5.9452 -3.6400 38 1 6.1956 -7.5941 -2.2245 39 1 6.0359 -7.4387 0.2234 40 1 4.6595 -6.6578 2.0880 41 1 5.6162 -5.1636 2.0733 42 1 3.2298 -5.0606 3.0529 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158903761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:24 Heat of formation + Delta-G solvation = 6.531609 kcal Electronic energy + Delta-G solvation = -27131.525417 eV Core-core repulsion = 23460.889975 eV Total energy + Delta-G solvation = -3670.635442 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.85959 -40.29289 -39.62782 -36.58191 -36.40889 -35.96298 -33.22031 -32.41907 -32.14947 -30.88017 -29.54476 -28.40064 -26.39891 -25.56445 -23.62590 -23.18703 -22.67437 -22.46770 -20.01479 -19.15352 -18.52760 -18.11994 -17.74785 -17.71955 -16.82125 -16.37836 -16.15604 -15.69454 -15.57767 -15.30718 -15.10731 -14.98134 -14.60039 -14.37399 -14.25444 -13.92531 -13.87746 -13.48268 -13.39614 -13.17261 -13.10124 -12.98051 -12.87378 -12.55063 -12.23413 -12.15644 -11.90579 -11.61562 -11.44582 -11.12390 -10.49104 -10.26705 -10.01603 -9.82139 -9.64426 -9.52706 -8.64870 -8.37586 -6.16037 0.25755 0.42534 0.88715 1.20222 1.38924 1.50671 1.53658 1.54344 2.21225 2.31435 2.66277 2.81718 3.03832 3.43775 3.61829 3.67522 3.84276 3.96302 4.16543 4.26215 4.36948 4.43849 4.50531 4.60775 4.63165 4.71477 4.72820 4.91349 4.95576 4.98276 5.03843 5.09315 5.15597 5.24833 5.40920 5.48385 5.52816 5.59897 5.75425 5.87758 5.91146 6.05366 6.12042 6.23857 6.35284 6.69420 6.75030 6.88586 7.07881 7.24921 7.94388 8.39234 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009864 B = 0.005331 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.825291 B = 5250.957448 C = 6794.446601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.018 3.982 3 C -0.195 4.195 4 C -0.145 4.145 5 C 0.001 3.999 6 C -0.477 4.477 7 H 0.080 0.920 8 C 0.031 3.969 9 N -0.835 5.835 10 Si 0.983 3.017 11 H -0.253 1.253 12 H -0.269 1.269 13 H -0.270 1.270 14 C 0.290 3.710 15 N -0.701 5.701 16 C 0.206 3.794 17 H 0.087 0.913 18 C -0.113 4.113 19 C -0.109 4.109 20 C -0.121 4.121 21 C -0.105 4.105 22 C -0.106 4.106 23 C -0.095 4.095 24 C 0.147 3.853 25 N -0.711 5.711 26 C 0.501 3.499 27 O -0.575 6.575 28 N -0.520 5.520 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.285 0.715 35 H 0.407 0.593 36 H 0.110 0.890 37 H 0.145 0.855 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.132 0.868 41 H 0.088 0.912 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 -17.539 -3.530 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.118 4.118 3 C -0.217 4.217 4 C -0.171 4.171 5 C -0.006 4.006 6 C -0.508 4.508 7 H 0.098 0.902 8 C -0.182 4.182 9 N -0.462 5.462 10 Si 0.804 3.196 11 H -0.176 1.176 12 H -0.194 1.194 13 H -0.195 1.195 14 C 0.053 3.947 15 N -0.342 5.342 16 C 0.097 3.903 17 H 0.105 0.895 18 C -0.114 4.114 19 C -0.127 4.127 20 C -0.139 4.139 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.096 4.096 24 C 0.024 3.976 25 N -0.364 5.364 26 C 0.285 3.715 27 O -0.452 6.452 28 N -0.237 5.237 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.245 0.755 36 H 0.128 0.872 37 H 0.163 0.837 38 H 0.177 0.823 39 H 0.182 0.818 40 H 0.150 0.850 41 H 0.106 0.894 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.394 -17.812 -3.372 18.443 hybrid contribution 1.101 1.611 0.441 2.001 sum 4.495 -16.201 -2.931 17.067 Atomic orbital electron populations 1.20313 0.88726 1.01680 1.01746 1.20764 0.96651 0.87587 1.06755 1.21504 0.94926 0.97932 1.07343 1.21442 0.93103 0.97971 1.04632 1.18249 0.94888 0.90594 0.96852 1.19386 0.90703 1.03683 1.37051 0.90171 1.26711 1.05543 0.94038 0.91896 1.69891 1.40248 1.11119 1.24975 0.85142 0.76054 0.79482 0.78937 1.17600 1.19360 1.19493 1.18641 0.88370 0.86113 1.01594 1.43549 1.07080 0.99717 1.83807 1.19077 0.95414 0.84419 0.91421 0.89484 1.19501 1.00808 0.96295 0.94805 1.21160 0.99371 0.98757 0.93435 1.21418 0.96773 0.94341 1.01389 1.21554 0.98209 0.98916 0.93584 1.21336 0.98111 0.97206 0.95756 1.19848 0.98476 0.96012 0.95221 1.20345 0.88055 0.98655 0.90527 1.45302 1.32170 1.40783 1.18155 1.20957 0.82243 0.78464 0.89839 1.90737 1.30152 1.50906 1.73434 1.66514 1.08145 1.30240 1.18839 0.91205 0.93165 0.90741 0.86456 0.86711 0.90454 0.75529 0.87157 0.83724 0.82283 0.81812 0.84982 0.89448 0.75761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.67 10.15 71.23 0.72 -1.94 16 2 C 0.02 0.88 6.79 42.64 0.29 1.17 16 3 C -0.19 -9.90 9.69 22.32 0.22 -9.68 16 4 C -0.14 -8.07 8.79 22.89 0.20 -7.87 16 5 C 0.00 0.06 5.60 -21.06 -0.12 -0.06 16 6 C -0.48 -25.23 8.54 23.37 0.20 -25.03 16 7 H 0.08 3.96 6.67 -2.91 -0.02 3.94 16 8 C 0.03 1.58 5.23 85.25 0.45 2.02 16 9 N -0.84 -44.52 10.83 21.83 0.24 -44.28 16 10 Si 0.98 37.92 29.58 68.60 2.03 39.94 16 11 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 12 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 13 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 14 C 0.29 15.35 7.46 134.05 1.00 16.35 16 15 N -0.70 -31.11 5.08 -332.16 -1.69 -32.79 16 16 C 0.21 7.96 2.50 43.12 0.11 8.07 16 17 H 0.09 3.81 7.50 -2.39 -0.02 3.79 16 18 C -0.11 -3.30 5.17 -19.96 -0.10 -3.40 16 19 C -0.11 -2.89 9.65 22.32 0.22 -2.68 16 20 C -0.12 -2.33 10.05 22.23 0.22 -2.11 16 21 C -0.10 -1.54 10.05 22.22 0.22 -1.31 16 22 C -0.11 -1.59 9.64 22.34 0.22 -1.37 16 23 C -0.09 -2.07 5.81 -19.97 -0.12 -2.18 16 24 C 0.15 2.76 6.99 85.73 0.60 3.36 16 25 N -0.71 -19.84 5.44 -473.10 -2.58 -22.42 16 26 C 0.50 19.81 7.27 87.59 0.64 20.44 16 27 O -0.57 -28.44 17.27 -3.03 -0.05 -28.49 16 28 N -0.52 -27.62 8.53 -179.58 -1.53 -29.15 16 29 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 2.58 8.07 -2.38 -0.02 2.57 16 32 H 0.12 5.22 8.06 -2.91 -0.02 5.20 16 33 H 0.12 6.56 6.17 -2.91 -0.02 6.54 16 34 H 0.28 13.79 8.30 -92.71 -0.77 13.02 16 35 H 0.41 17.37 6.78 -92.71 -0.63 16.75 16 36 H 0.11 3.19 8.06 -2.91 -0.02 3.16 16 37 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 39 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.13 1.32 8.10 -2.39 -0.02 1.30 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.41 9.96 8.82 -92.71 -0.82 9.14 16 Total: -1.00 -75.91 352.56 1.01 -74.90 By element: Atomic # 1 Polarization: 48.89 SS G_CDS: -0.36 Total: 48.52 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 4.96 Total: -6.23 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -5.56 Total: -128.65 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.05 Total: -28.49 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.94 kcal Total: -75.91 1.01 -74.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158903761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.430 kcal (2) G-P(sol) polarization free energy of solvation -75.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds