Wall clock time and date at job start Tue Mar 31 2020 14:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38685 * 119.27898 * 2 1 4 4 C 1.38009 * 119.62803 * 180.02562 * 3 2 1 5 5 C 1.41000 * 118.27988 * 359.74676 * 4 3 2 6 6 C 1.41021 * 120.70489 * 180.24578 * 5 4 3 7 7 H 1.07998 * 120.00050 * 154.91634 * 6 5 4 8 8 C 1.39944 * 120.00171 * 334.92241 * 6 5 4 9 9 N 1.30875 * 119.99482 * 343.58034 * 8 6 5 10 10 Si 1.86799 * 120.00413 * 163.58343 * 8 6 5 11 11 H 1.48502 * 109.46935 * 89.99677 * 10 8 6 12 12 H 1.48501 * 109.47403 * 210.00008 * 10 8 6 13 13 H 1.48497 * 109.47036 * 329.99913 * 10 8 6 14 14 C 1.41707 * 118.59023 * 0.48758 * 5 4 3 15 15 N 1.38091 * 119.90424 * 179.77174 * 14 5 4 16 16 C 1.46504 * 119.99894 * 179.72392 * 15 14 5 17 17 H 1.08997 * 109.14021 * 324.21800 * 16 15 14 18 18 C 1.50401 * 109.14561 * 205.00514 * 16 15 14 19 19 C 1.38664 * 118.72883 * 38.95921 * 18 16 15 20 20 C 1.38042 * 120.33486 * 179.83877 * 19 18 16 21 21 C 1.38266 * 119.81601 * 0.52910 * 20 19 18 22 22 C 1.38008 * 119.88151 * 359.42401 * 21 20 19 23 23 C 1.37824 * 121.38557 * 218.99919 * 18 16 15 24 24 C 1.50268 * 121.66208 * 359.80257 * 23 18 16 25 25 N 1.45272 * 112.00454 * 21.52047 * 24 23 18 26 26 C 1.33448 * 123.56123 * 338.01427 * 25 24 23 27 27 O 1.21277 * 118.57617 * 180.62262 * 26 25 24 28 28 N 1.31967 * 119.27563 * 180.02562 * 2 1 3 29 29 H 1.09008 * 109.46774 * 269.97970 * 1 2 3 30 30 H 1.09002 * 109.46851 * 29.98115 * 1 2 3 31 31 H 1.09001 * 109.47141 * 149.98251 * 1 2 3 32 32 H 1.07997 * 120.18206 * 0.04403 * 3 2 1 33 33 H 1.07992 * 120.85692 * 180.02562 * 4 3 2 34 34 H 0.97004 * 119.99802 * 179.97438 * 9 8 6 35 35 H 0.96998 * 120.00360 * 359.73979 * 15 14 5 36 36 H 1.07997 * 119.83511 * 0.09182 * 19 18 16 37 37 H 1.07998 * 120.09256 * 180.25862 * 20 19 18 38 38 H 1.08001 * 120.05708 * 179.70997 * 21 20 19 39 39 H 1.07996 * 119.81248 * 180.26961 * 22 21 20 40 40 H 1.09006 * 108.97025 * 142.16906 * 24 23 18 41 41 H 1.09004 * 108.97514 * 260.86749 * 24 23 18 42 42 H 0.97001 * 118.22440 * 157.99168 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2097 0.0000 4 6 3.5653 1.2181 -0.0005 5 6 4.2409 -0.0195 0.0044 6 6 5.6502 -0.0706 0.0093 7 1 6.1578 -0.9358 0.4094 8 6 6.3910 0.9999 -0.5041 9 7 5.8111 1.8898 -1.2688 10 14 8.2074 1.1588 -0.0982 11 1 9.0079 0.4380 -1.1205 12 1 8.5896 2.5938 -0.0916 13 1 8.4688 0.5708 1.2401 14 6 3.4737 -1.2109 -0.0009 15 7 4.1074 -2.4378 -0.0010 16 6 3.3163 -3.6709 -0.0004 17 1 2.4205 -3.5205 0.6022 18 6 4.1339 -4.7813 0.6000 19 6 4.9436 -4.4987 1.6896 20 6 5.7055 -5.4936 2.2687 21 6 5.6692 -6.7757 1.7525 22 6 4.8628 -7.0580 0.6687 23 6 4.0920 -6.0607 0.0891 24 6 3.2263 -6.4120 -1.0879 25 7 2.8842 -5.2432 -1.8800 26 6 2.9128 -3.9963 -1.4056 27 8 2.5980 -3.0873 -2.1441 28 7 2.1523 -1.1511 -0.0005 29 1 -0.3633 -0.0004 1.0278 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6365 2.1398 0.0007 33 1 4.1135 2.1485 -0.0001 34 1 6.3244 2.6321 -1.6244 35 1 5.0763 -2.4833 -0.0013 36 1 4.9752 -3.4961 2.0898 37 1 6.3316 -5.2700 3.1198 38 1 6.2673 -7.5560 2.1996 39 1 4.8320 -8.0609 0.2692 40 1 3.7580 -7.1244 -1.7187 41 1 2.3087 -6.8765 -0.7269 42 1 2.6209 -5.3764 -2.8041 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158903762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:29 Heat of formation + Delta-G solvation = 30.478379 kcal Electronic energy + Delta-G solvation = -27129.971839 eV Core-core repulsion = 23460.374807 eV Total energy + Delta-G solvation = -3669.597032 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.63023 -38.57912 -38.26268 -35.36924 -34.86138 -34.04069 -31.71474 -31.15553 -30.54427 -29.24342 -27.89948 -27.03081 -25.23903 -23.83954 -22.42186 -22.03811 -20.69566 -20.67716 -18.84813 -17.35321 -17.16825 -16.88078 -16.31166 -15.76679 -15.59556 -15.01330 -14.83669 -14.48790 -14.26552 -13.79293 -13.56919 -13.47235 -13.26886 -13.01726 -12.97808 -12.66979 -12.39382 -11.90343 -11.82556 -11.59129 -11.44743 -11.35840 -11.22090 -11.17576 -10.96393 -10.73902 -10.47651 -9.73537 -9.71369 -9.20024 -9.08415 -9.02979 -8.69858 -8.54909 -7.99333 -7.73406 -6.74983 -6.48057 -4.15892 1.20888 1.31548 2.77482 3.04093 3.08590 3.11327 3.17164 3.29272 3.48900 3.73743 3.95981 4.32034 4.52270 4.67344 4.73884 4.84151 4.89701 5.11053 5.20159 5.34484 5.41175 5.62831 5.72270 5.82223 5.88181 5.98751 6.00582 6.23093 6.33426 6.42761 6.48952 6.51250 6.54497 6.67304 6.85785 6.90748 7.00752 7.05564 7.17932 7.28727 7.51878 7.69054 7.85147 8.06622 8.29736 8.45977 8.68143 8.69639 8.85001 9.03008 9.87340 10.27182 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010358 B = 0.005226 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.453342 B = 5356.345996 C = 7039.759142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.030 3.970 3 C -0.184 4.184 4 C -0.122 4.122 5 C 0.035 3.965 6 C -0.458 4.458 7 H 0.072 0.928 8 C 0.076 3.924 9 N -0.798 5.798 10 Si 0.904 3.096 11 H -0.272 1.272 12 H -0.277 1.277 13 H -0.262 1.262 14 C 0.312 3.688 15 N -0.706 5.706 16 C 0.199 3.801 17 H 0.120 0.880 18 C -0.082 4.082 19 C -0.096 4.096 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.094 4.094 24 C 0.157 3.843 25 N -0.732 5.732 26 C 0.501 3.499 27 O -0.506 6.506 28 N -0.512 5.512 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.279 0.721 35 H 0.407 0.593 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 -15.724 4.381 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 C -0.207 4.207 4 C -0.148 4.148 5 C 0.028 3.972 6 C -0.489 4.489 7 H 0.090 0.910 8 C -0.141 4.141 9 N -0.424 5.424 10 Si 0.729 3.271 11 H -0.197 1.197 12 H -0.202 1.202 13 H -0.186 1.186 14 C 0.076 3.924 15 N -0.346 5.346 16 C 0.088 3.912 17 H 0.137 0.863 18 C -0.083 4.083 19 C -0.114 4.114 20 C -0.136 4.136 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.095 4.095 24 C 0.032 3.968 25 N -0.388 5.388 26 C 0.284 3.716 27 O -0.377 6.377 28 N -0.229 5.229 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.245 0.755 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -1.199 -15.733 4.076 16.297 hybrid contribution 1.715 0.730 -0.374 1.901 sum 0.516 -15.004 3.702 15.462 Atomic orbital electron populations 1.20279 0.91945 1.00799 1.00075 1.19927 0.94235 0.87952 1.08416 1.21226 0.95354 0.96626 1.07446 1.21319 0.92096 0.98118 1.03261 1.17842 0.93789 0.89933 0.95648 1.19075 0.90742 1.02826 1.36277 0.90952 1.25784 1.00571 0.94976 0.92752 1.69828 1.38333 1.11271 1.22953 0.86384 0.82523 0.78271 0.79949 1.19711 1.20187 1.18594 1.18186 0.87995 0.84826 1.01435 1.43479 1.06911 0.99881 1.84298 1.18901 0.95965 0.84451 0.91846 0.86269 1.19735 0.98468 0.93560 0.96565 1.21252 0.95111 1.00234 0.94812 1.21177 0.99277 0.93091 1.00035 1.21073 0.99031 0.96892 0.96619 1.20886 0.96909 0.98457 0.97038 1.19555 0.98912 0.93609 0.97390 1.19884 0.97759 0.88033 0.91080 1.45464 1.71376 1.06314 1.15598 1.20952 0.77361 0.81897 0.91354 1.90812 1.45438 1.44078 1.57418 1.66241 1.08240 1.29756 1.18616 0.93371 0.92971 0.92786 0.88835 0.85725 0.91042 0.75526 0.84793 0.85760 0.85955 0.85815 0.89781 0.90829 0.76766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 10.15 36.01 0.37 -1.06 16 2 C 0.03 0.72 6.79 -82.37 -0.56 0.16 16 3 C -0.18 -4.55 9.69 -39.50 -0.38 -4.93 16 4 C -0.12 -3.25 8.79 -38.62 -0.34 -3.59 16 5 C 0.03 0.93 5.59 -106.47 -0.60 0.34 16 6 C -0.46 -11.87 8.52 -37.89 -0.32 -12.19 16 7 H 0.07 1.75 6.70 -52.49 -0.35 1.39 16 8 C 0.08 1.91 5.19 -17.32 -0.09 1.82 16 9 N -0.80 -21.02 10.95 55.55 0.61 -20.41 16 10 Si 0.90 18.70 29.59 -169.99 -5.03 13.67 16 11 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 12 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 13 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 14 C 0.31 7.89 6.88 -155.02 -1.07 6.82 16 15 N -0.71 -15.10 4.24 -56.33 -0.24 -15.33 16 16 C 0.20 3.64 2.76 -70.82 -0.20 3.44 16 17 H 0.12 2.31 7.54 -51.93 -0.39 1.92 16 18 C -0.08 -1.20 5.51 -104.76 -0.58 -1.78 16 19 C -0.10 -1.32 8.94 -39.50 -0.35 -1.67 16 20 C -0.12 -1.32 10.05 -39.64 -0.40 -1.72 16 21 C -0.12 -1.15 10.05 -39.66 -0.40 -1.55 16 22 C -0.11 -1.11 9.64 -39.48 -0.38 -1.49 16 23 C -0.09 -1.11 5.81 -104.80 -0.61 -1.72 16 24 C 0.16 1.58 6.99 -6.06 -0.04 1.54 16 25 N -0.73 -10.07 5.45 -63.20 -0.34 -10.41 16 26 C 0.50 9.49 7.52 -12.02 -0.09 9.40 16 27 O -0.51 -12.19 16.37 5.56 0.09 -12.10 16 28 N -0.51 -12.88 8.54 -8.11 -0.07 -12.95 16 29 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.09 2.06 8.06 -52.49 -0.42 1.63 16 33 H 0.13 3.40 6.26 -52.49 -0.33 3.07 16 34 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 35 H 0.41 8.48 6.33 -40.82 -0.26 8.23 16 36 H 0.13 1.97 7.54 -52.49 -0.40 1.58 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.40 4.87 8.82 -40.82 -0.36 4.51 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -32.78 349.65 -10.77 -43.55 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -6.04 Total: -8.18 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.04 Total: -59.11 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.78 -10.77 -43.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158903762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.029 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds