Wall clock time and date at job start Tue Mar 31 2020 14:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29744 * 126.28876 * 2 1 4 4 O 1.41359 * 109.73774 * 179.97438 * 3 2 1 5 5 C 1.34826 * 109.32940 * 359.97438 * 4 3 2 6 6 C 1.38975 * 133.44800 * 180.02562 * 5 4 3 7 7 C 1.37805 * 119.79357 * 179.97438 * 6 5 4 8 8 C 1.38783 * 120.59823 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.74032 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47201 * 90.00176 * 9 8 7 11 11 C 1.38086 * 120.00014 * 180.02562 * 10 9 8 12 12 N 1.32270 * 119.90784 * 0.02562 * 11 10 9 13 13 C 1.31965 * 121.86619 * 180.02562 * 12 11 10 14 14 C 1.50699 * 119.27445 * 180.02562 * 13 12 11 15 15 C 1.38676 * 121.45022 * 359.97438 * 13 12 11 16 16 C 1.38016 * 119.62634 * 359.72670 * 15 13 12 17 17 C 1.41003 * 118.27850 * 0.50920 * 16 15 13 18 18 C 1.41019 * 120.70643 * 179.78409 * 17 16 15 19 19 H 1.07999 * 120.00296 * 154.72404 * 18 17 16 20 20 C 1.39951 * 119.99490 * 334.44432 * 18 17 16 21 21 N 1.30867 * 120.00623 * 343.98424 * 20 18 17 22 22 Si 1.86801 * 119.99750 * 163.98629 * 20 18 17 23 23 H 1.48499 * 109.47090 * 89.99886 * 22 20 18 24 24 H 1.48495 * 109.47257 * 210.00008 * 22 20 18 25 25 H 1.48501 * 109.47328 * 330.00096 * 22 20 18 26 26 C 1.36620 * 120.51834 * 0.27442 * 8 7 6 27 27 C 1.39688 * 119.78798 * 359.45861 * 26 8 7 28 28 H 1.09003 * 109.46891 * 270.00478 * 1 2 3 29 29 H 1.09000 * 109.46831 * 30.00703 * 1 2 3 30 30 H 1.08999 * 109.46860 * 150.00556 * 1 2 3 31 31 H 1.07997 * 120.10801 * 359.97438 * 6 5 4 32 32 H 1.08006 * 119.69912 * 180.02562 * 7 6 5 33 33 H 1.09006 * 109.47159 * 330.00083 * 9 8 7 34 34 H 1.08995 * 109.47095 * 210.00513 * 9 8 7 35 35 H 0.97007 * 119.99892 * 359.97438 * 10 9 8 36 36 H 1.08999 * 109.47341 * 89.99621 * 14 13 12 37 37 H 1.08997 * 109.47259 * 210.00031 * 14 13 12 38 38 H 1.09005 * 109.46963 * 329.99971 * 14 13 12 39 39 H 1.07996 * 120.18936 * 180.02562 * 15 13 12 40 40 H 1.07995 * 120.85986 * 180.29507 * 16 15 13 41 41 H 0.96996 * 120.00483 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.10698 * 179.70298 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2750 1.0458 0.0000 4 8 3.6300 0.6431 0.0006 5 6 3.6953 -0.7036 0.0015 6 6 4.7494 -1.6093 0.0029 7 6 4.4894 -2.9626 0.0041 8 6 3.1830 -3.4309 0.0046 9 6 2.9208 -4.9149 0.0054 10 7 2.8361 -5.3952 1.3869 11 6 2.6005 -6.7320 1.6400 12 7 2.4521 -7.5775 0.6337 13 6 2.2252 -8.8625 0.8310 14 6 2.0659 -9.7739 -0.3585 15 6 2.1311 -9.3927 2.1090 16 6 2.2825 -8.5658 3.2036 17 6 2.5193 -7.1944 2.9771 18 6 2.6772 -6.3027 4.0581 19 1 3.2401 -5.3903 3.9278 20 6 2.0995 -6.5975 5.2983 21 7 1.1684 -7.5129 5.3855 22 14 2.6575 -5.6841 6.8292 23 1 1.8259 -4.4672 7.0103 24 1 2.5082 -6.5666 8.0142 25 1 4.0822 -5.2923 6.6803 26 6 2.1328 -2.5571 -0.0018 27 6 2.3746 -1.1814 0.0026 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8900 -0.5137 31 1 5.7692 -1.2537 0.0029 32 1 5.3098 -3.6651 0.0056 33 1 3.7340 -5.4279 -0.5083 34 1 1.9812 -5.1182 -0.5082 35 1 2.9463 -4.7741 2.1239 36 1 3.0395 -10.1721 -0.6441 37 1 1.3988 -10.5960 -0.0996 38 1 1.6442 -9.2126 -1.1924 39 1 1.9452 -10.4476 2.2469 40 1 2.2178 -8.9584 4.2075 41 1 0.7678 -7.7169 6.2450 42 1 1.1188 -2.9289 -0.0062 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160868098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:38 Heat of formation + Delta-G solvation = 86.166957 kcal Electronic energy + Delta-G solvation = -25792.385920 eV Core-core repulsion = 22125.203726 eV Total energy + Delta-G solvation = -3667.182194 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.86005 -38.81168 -38.11927 -34.82226 -34.79157 -34.12157 -31.53285 -30.69512 -30.51389 -29.27539 -28.87519 -27.68662 -25.44243 -23.76767 -23.40362 -21.84623 -20.77227 -20.63753 -20.46195 -17.40108 -17.25744 -17.11692 -16.19085 -16.12406 -15.62423 -15.35936 -14.76126 -14.33341 -13.89405 -13.75752 -13.69696 -13.54604 -13.47844 -13.25726 -12.99083 -12.68075 -12.59741 -12.27586 -11.94970 -11.80868 -11.65524 -11.50526 -11.43677 -11.33499 -11.15312 -11.08598 -10.93622 -10.84483 -10.52888 -9.81740 -9.28817 -9.05600 -8.91031 -8.64748 -8.08814 -7.90373 -6.83746 -6.53235 -4.24850 0.50962 1.12207 1.90014 2.39320 2.69029 3.04098 3.05286 3.09217 3.19790 3.41936 3.87154 3.89591 4.08390 4.41986 4.52252 4.64579 4.78921 5.00730 5.06994 5.14836 5.15604 5.24269 5.37414 5.60762 5.67935 5.73810 5.80967 5.95498 5.97494 6.06650 6.11854 6.16134 6.41374 6.42711 6.51952 6.55005 6.56071 6.77491 6.90915 7.09701 7.11036 7.19059 7.61828 7.76000 7.97931 8.24108 8.47043 8.62462 8.75921 8.95952 9.74715 10.17450 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.003694 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.053374 B = 7577.868753 C = 9172.904780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.136 3.864 3 N -0.298 5.298 4 O -0.098 6.098 5 C 0.084 3.916 6 C -0.131 4.131 7 C -0.039 4.039 8 C -0.122 4.122 9 C 0.189 3.811 10 N -0.727 5.727 11 C 0.306 3.694 12 N -0.528 5.528 13 C 0.026 3.974 14 C -0.074 4.074 15 C -0.184 4.184 16 C -0.123 4.123 17 C 0.032 3.968 18 C -0.456 4.456 19 H 0.074 0.926 20 C 0.077 3.923 21 N -0.798 5.798 22 Si 0.904 3.096 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.262 1.262 26 C -0.019 4.019 27 C -0.201 4.201 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.404 0.596 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.280 0.720 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 8.370 -8.038 11.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 N -0.044 5.044 4 O -0.107 6.107 5 C 0.030 3.970 6 C -0.150 4.150 7 C -0.058 4.058 8 C -0.123 4.123 9 C 0.064 3.936 10 N -0.368 5.368 11 C 0.069 3.931 12 N -0.247 5.247 13 C -0.109 4.109 14 C -0.131 4.131 15 C -0.207 4.207 16 C -0.149 4.149 17 C 0.025 3.975 18 C -0.487 4.487 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.424 5.424 22 Si 0.728 3.272 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.186 1.186 26 C -0.039 4.039 27 C -0.204 4.204 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.240 0.760 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.142 0.858 41 H 0.091 0.909 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.752 9.856 -8.911 13.308 hybrid contribution 0.113 -0.433 2.042 2.090 sum 0.865 9.423 -6.869 11.693 Atomic orbital electron populations 1.20481 0.84530 1.04814 1.04719 1.24608 0.98079 0.89731 0.91992 1.79823 0.85290 1.18411 1.20837 1.89120 1.22420 1.17541 1.81649 1.20295 0.95351 0.84689 0.96654 1.20020 0.97169 0.90860 1.06975 1.21171 0.97119 0.94038 0.93521 1.19815 0.92660 0.96786 1.02994 1.19757 1.01417 0.86289 0.86165 1.43711 1.82442 1.05593 1.05017 1.18382 1.01126 0.84443 0.89187 1.66321 1.19608 1.03735 1.34994 1.19939 1.08030 0.89928 0.92991 1.20285 1.00099 0.96961 0.95803 1.21230 1.07152 0.98730 0.93577 1.21339 1.03518 0.92181 0.97887 1.17895 0.95894 0.93245 0.90452 1.19118 1.29622 1.05835 0.94114 0.90822 1.25785 0.92991 0.94836 1.00431 1.69801 1.18256 1.27501 1.26850 0.86382 0.80363 0.79806 0.80620 1.19638 1.20122 1.18563 1.20404 1.00176 0.89520 0.93816 1.20674 0.91041 0.95056 1.13659 0.88599 0.89549 0.88943 0.84373 0.83952 0.92098 0.92204 0.75962 0.93258 0.92924 0.92781 0.88782 0.85751 0.90950 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.48 36.01 0.38 -0.31 16 2 C 0.14 1.65 7.46 -80.11 -0.60 1.05 16 3 N -0.30 -4.25 12.81 34.91 0.45 -3.81 16 4 O -0.10 -1.47 12.06 7.66 0.09 -1.38 16 5 C 0.08 1.16 7.48 -38.48 -0.29 0.87 16 6 C -0.13 -1.54 10.07 -39.47 -0.40 -1.93 16 7 C -0.04 -0.46 9.66 -39.54 -0.38 -0.84 16 8 C -0.12 -1.60 5.21 -105.00 -0.55 -2.15 16 9 C 0.19 2.96 5.79 -5.19 -0.03 2.93 16 10 N -0.73 -14.09 5.60 -61.15 -0.34 -14.43 16 11 C 0.31 7.15 7.52 -155.03 -1.17 5.99 16 12 N -0.53 -12.21 9.44 -8.11 -0.08 -12.28 16 13 C 0.03 0.57 6.79 -82.37 -0.56 0.01 16 14 C -0.07 -1.30 10.15 36.01 0.37 -0.93 16 15 C -0.18 -4.26 9.69 -39.50 -0.38 -4.64 16 16 C -0.12 -3.11 8.79 -38.62 -0.34 -3.45 16 17 C 0.03 0.81 5.59 -106.47 -0.60 0.22 16 18 C -0.46 -11.28 8.52 -37.89 -0.32 -11.61 16 19 H 0.07 1.72 6.68 -52.49 -0.35 1.37 16 20 C 0.08 1.84 5.19 -17.32 -0.09 1.75 16 21 N -0.80 -19.95 10.96 55.55 0.61 -19.34 16 22 Si 0.90 18.12 29.59 -169.99 -5.03 13.09 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 26 C -0.02 -0.24 9.67 -39.62 -0.38 -0.62 16 27 C -0.20 -2.63 6.33 -105.16 -0.67 -3.30 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.14 1.46 8.06 -52.48 -0.42 1.03 16 33 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.40 7.73 6.66 -40.82 -0.27 7.46 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.94 8.06 -52.49 -0.42 1.51 16 40 H 0.12 3.24 6.28 -52.49 -0.33 2.91 16 41 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 42 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -29.30 361.28 -10.01 -39.31 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.15 Total: 10.36 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -6.00 Total: -16.96 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.64 Total: -49.87 kcal Atomic # 8 Polarization: -1.47 SS G_CDS: 0.09 Total: -1.38 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.30 -10.01 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160868098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.473 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds