Wall clock time and date at job start Tue Mar 31 2020 14:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29744 * 126.28876 * 2 1 4 4 O 1.41359 * 109.73774 * 179.97438 * 3 2 1 5 5 C 1.34826 * 109.32940 * 359.97438 * 4 3 2 6 6 C 1.38975 * 133.44800 * 180.02562 * 5 4 3 7 7 C 1.37805 * 119.79357 * 179.97438 * 6 5 4 8 8 C 1.38783 * 120.59823 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.74032 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47201 * 90.00176 * 9 8 7 11 11 C 1.38086 * 120.00014 * 180.02562 * 10 9 8 12 12 N 1.32270 * 119.90784 * 0.02562 * 11 10 9 13 13 C 1.31965 * 121.86619 * 180.02562 * 12 11 10 14 14 C 1.50699 * 119.27445 * 180.02562 * 13 12 11 15 15 C 1.38676 * 121.45022 * 359.97438 * 13 12 11 16 16 C 1.38016 * 119.62634 * 359.72670 * 15 13 12 17 17 C 1.41003 * 118.27850 * 0.50920 * 16 15 13 18 18 C 1.41019 * 120.70643 * 179.78409 * 17 16 15 19 19 H 1.07999 * 120.00296 * 154.72404 * 18 17 16 20 20 C 1.39951 * 119.99490 * 334.44432 * 18 17 16 21 21 N 1.30867 * 120.00623 * 343.98424 * 20 18 17 22 22 Si 1.86801 * 119.99750 * 163.98629 * 20 18 17 23 23 H 1.48499 * 109.47090 * 89.99886 * 22 20 18 24 24 H 1.48495 * 109.47257 * 210.00008 * 22 20 18 25 25 H 1.48501 * 109.47328 * 330.00096 * 22 20 18 26 26 C 1.36620 * 120.51834 * 0.27442 * 8 7 6 27 27 C 1.39688 * 119.78798 * 359.45861 * 26 8 7 28 28 H 1.09003 * 109.46891 * 270.00478 * 1 2 3 29 29 H 1.09000 * 109.46831 * 30.00703 * 1 2 3 30 30 H 1.08999 * 109.46860 * 150.00556 * 1 2 3 31 31 H 1.07997 * 120.10801 * 359.97438 * 6 5 4 32 32 H 1.08006 * 119.69912 * 180.02562 * 7 6 5 33 33 H 1.09006 * 109.47159 * 330.00083 * 9 8 7 34 34 H 1.08995 * 109.47095 * 210.00513 * 9 8 7 35 35 H 0.97007 * 119.99892 * 359.97438 * 10 9 8 36 36 H 1.08999 * 109.47341 * 89.99621 * 14 13 12 37 37 H 1.08997 * 109.47259 * 210.00031 * 14 13 12 38 38 H 1.09005 * 109.46963 * 329.99971 * 14 13 12 39 39 H 1.07996 * 120.18936 * 180.02562 * 15 13 12 40 40 H 1.07995 * 120.85986 * 180.29507 * 16 15 13 41 41 H 0.96996 * 120.00483 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.10698 * 179.70298 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2750 1.0458 0.0000 4 8 3.6300 0.6431 0.0006 5 6 3.6953 -0.7036 0.0015 6 6 4.7494 -1.6093 0.0029 7 6 4.4894 -2.9626 0.0041 8 6 3.1830 -3.4309 0.0046 9 6 2.9208 -4.9149 0.0054 10 7 2.8361 -5.3952 1.3869 11 6 2.6005 -6.7320 1.6400 12 7 2.4521 -7.5775 0.6337 13 6 2.2252 -8.8625 0.8310 14 6 2.0659 -9.7739 -0.3585 15 6 2.1311 -9.3927 2.1090 16 6 2.2825 -8.5658 3.2036 17 6 2.5193 -7.1944 2.9771 18 6 2.6772 -6.3027 4.0581 19 1 3.2401 -5.3903 3.9278 20 6 2.0995 -6.5975 5.2983 21 7 1.1684 -7.5129 5.3855 22 14 2.6575 -5.6841 6.8292 23 1 1.8259 -4.4672 7.0103 24 1 2.5082 -6.5666 8.0142 25 1 4.0822 -5.2923 6.6803 26 6 2.1328 -2.5571 -0.0018 27 6 2.3746 -1.1814 0.0026 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8900 -0.5137 31 1 5.7692 -1.2537 0.0029 32 1 5.3098 -3.6651 0.0056 33 1 3.7340 -5.4279 -0.5083 34 1 1.9812 -5.1182 -0.5082 35 1 2.9463 -4.7741 2.1239 36 1 3.0395 -10.1721 -0.6441 37 1 1.3988 -10.5960 -0.0996 38 1 1.6442 -9.2126 -1.1924 39 1 1.9452 -10.4476 2.2469 40 1 2.2178 -8.9584 4.2075 41 1 0.7678 -7.7169 6.2450 42 1 1.1188 -2.9289 -0.0062 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160868098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:37 Heat of formation + Delta-G solvation = 71.556779 kcal Electronic energy + Delta-G solvation = -25793.019465 eV Core-core repulsion = 22125.203726 eV Total energy + Delta-G solvation = -3667.815739 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.85170 -40.44633 -39.29603 -36.31862 -35.88776 -35.72509 -32.95469 -32.31194 -31.57798 -30.64567 -29.71894 -29.33674 -26.81567 -25.40547 -24.37752 -23.11757 -22.49772 -22.12557 -21.47994 -19.10327 -18.44985 -18.16607 -17.62270 -17.30271 -17.10553 -16.72420 -16.20847 -15.56998 -15.28795 -15.15371 -15.04157 -14.53145 -14.37601 -14.32202 -14.25343 -14.07486 -13.81913 -13.58026 -13.30672 -13.16003 -13.12320 -12.96967 -12.91542 -12.74818 -12.51515 -12.29227 -12.18079 -12.07266 -11.83923 -11.59765 -11.06664 -10.56434 -10.05402 -9.94623 -9.75474 -9.58042 -8.62021 -8.25981 -6.09386 -0.45390 0.09042 0.94431 0.96377 1.25972 1.40516 1.40697 1.49008 1.54418 2.22345 2.36918 2.83483 3.00202 3.05428 3.14825 3.47416 3.70095 3.82025 4.10860 4.11847 4.22496 4.26961 4.45472 4.53462 4.56607 4.60101 4.73237 4.77933 4.81000 4.89508 4.95189 5.01763 5.04321 5.06939 5.11302 5.16480 5.23100 5.29405 5.47048 5.47459 5.54529 5.83331 5.94442 6.12675 6.17195 6.44244 6.80220 6.86744 6.94473 7.18562 7.96945 8.41092 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.003694 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.053374 B = 7577.868753 C = 9172.904780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.145 3.855 3 N -0.326 5.326 4 O -0.121 6.121 5 C 0.067 3.933 6 C -0.128 4.128 7 C -0.034 4.034 8 C -0.129 4.129 9 C 0.196 3.804 10 N -0.721 5.721 11 C 0.304 3.696 12 N -0.538 5.538 13 C 0.024 3.976 14 C -0.069 4.069 15 C -0.201 4.201 16 C -0.145 4.145 17 C -0.003 4.003 18 C -0.479 4.479 19 H 0.079 0.921 20 C 0.037 3.963 21 N -0.832 5.832 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.272 1.272 25 H -0.260 1.260 26 C -0.015 4.015 27 C -0.213 4.213 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.403 0.597 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.284 0.716 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 8.694 -8.809 12.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.035 4.035 3 N -0.074 5.074 4 O -0.129 6.129 5 C 0.013 3.987 6 C -0.147 4.147 7 C -0.054 4.054 8 C -0.129 4.129 9 C 0.072 3.928 10 N -0.360 5.360 11 C 0.066 3.934 12 N -0.257 5.257 13 C -0.110 4.110 14 C -0.127 4.127 15 C -0.223 4.223 16 C -0.172 4.172 17 C -0.010 4.010 18 C -0.510 4.510 19 H 0.097 0.903 20 C -0.177 4.177 21 N -0.459 5.459 22 Si 0.794 3.206 23 H -0.191 1.191 24 H -0.197 1.197 25 H -0.184 1.184 26 C -0.036 4.036 27 C -0.217 4.217 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.179 0.821 32 H 0.178 0.822 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.240 0.760 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.770 10.195 -9.708 14.099 hybrid contribution 0.087 -0.576 2.157 2.234 sum 0.857 9.619 -7.551 12.259 Atomic orbital electron populations 1.20731 0.81545 1.06419 1.05928 1.25262 0.99721 0.88725 0.89800 1.79807 0.85105 1.19450 1.22996 1.89076 1.23311 1.18220 1.82267 1.20699 0.96367 0.84600 0.96987 1.20292 0.97971 0.90445 1.05989 1.21351 0.97068 0.94403 0.92537 1.19624 0.93581 0.95268 1.04471 1.19753 1.01229 0.87864 0.83926 1.43834 1.81261 1.04206 1.06701 1.18639 0.99988 0.85987 0.88819 1.66511 1.20433 1.04152 1.34593 1.20753 1.05570 0.90339 0.94368 1.20344 1.01714 0.96643 0.93956 1.21473 1.07658 0.99654 0.93530 1.21356 1.05010 0.92953 0.97863 1.18221 0.97352 0.93633 0.91775 1.19337 1.30459 1.06291 0.94918 0.90324 1.26550 0.92626 0.95548 1.02946 1.69871 1.19324 1.29021 1.27722 0.85346 0.79775 0.78568 0.76912 1.19091 1.19685 1.18360 1.20504 1.00716 0.89264 0.93066 1.20869 0.91257 0.95463 1.14071 0.87337 0.88124 0.87172 0.82061 0.82230 0.92005 0.92552 0.76013 0.91455 0.90918 0.91980 0.86765 0.87538 0.90539 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 10.48 71.24 0.75 -0.44 16 2 C 0.15 3.34 7.46 45.04 0.34 3.67 16 3 N -0.33 -9.15 12.81 -43.47 -0.56 -9.70 16 4 O -0.12 -3.64 12.06 29.81 0.36 -3.28 16 5 C 0.07 1.79 7.48 22.99 0.17 1.96 16 6 C -0.13 -2.80 10.07 22.34 0.23 -2.58 16 7 C -0.03 -0.75 9.66 22.30 0.22 -0.53 16 8 C -0.13 -3.20 5.21 -20.11 -0.10 -3.31 16 9 C 0.20 5.92 5.79 85.63 0.50 6.41 16 10 N -0.72 -27.55 5.60 -347.36 -1.95 -29.50 16 11 C 0.30 14.21 7.52 134.05 1.01 15.22 16 12 N -0.54 -24.39 9.44 -179.58 -1.70 -26.09 16 13 C 0.02 1.04 6.79 42.64 0.29 1.33 16 14 C -0.07 -2.24 10.15 71.24 0.72 -1.52 16 15 C -0.20 -9.25 9.69 22.32 0.22 -9.04 16 16 C -0.15 -7.54 8.79 22.90 0.20 -7.34 16 17 C 0.00 -0.15 5.59 -21.06 -0.12 -0.26 16 18 C -0.48 -24.11 8.52 23.37 0.20 -23.91 16 19 H 0.08 3.72 6.68 -2.91 -0.02 3.70 16 20 C 0.04 1.80 5.19 85.25 0.44 2.24 16 21 N -0.83 -42.59 10.96 21.83 0.24 -42.35 16 22 Si 0.97 37.32 29.59 68.60 2.03 39.35 16 23 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 24 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 25 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 26 C -0.02 -0.36 9.67 22.24 0.22 -0.14 16 27 C -0.21 -5.35 6.33 -20.22 -0.13 -5.48 16 28 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.06 1.88 8.08 -2.38 -0.02 1.86 16 34 H 0.06 1.76 8.07 -2.39 -0.02 1.74 16 35 H 0.40 15.32 6.66 -92.70 -0.62 14.70 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 38 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.11 5.79 6.28 -2.91 -0.02 5.77 16 41 H 0.28 13.31 8.30 -92.71 -0.77 12.54 16 42 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -64.23 361.28 4.01 -60.22 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: 0.45 Total: 35.05 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 5.14 Total: -23.70 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -3.96 Total: -107.64 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: 0.36 Total: -3.28 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Total: -64.23 4.01 -60.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160868098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.775 kcal (2) G-P(sol) polarization free energy of solvation -64.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds