Wall clock time and date at job start Tue Mar 31 2020 14:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29743 * 126.29163 * 2 1 4 4 O 1.41351 * 109.73752 * 179.97438 * 3 2 1 5 5 C 1.34826 * 109.33688 * 0.02562 * 4 3 2 6 6 C 1.38972 * 133.45211 * 180.02562 * 5 4 3 7 7 C 1.37805 * 119.79133 * 179.97438 * 6 5 4 8 8 C 1.38782 * 120.60056 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.74152 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.46693 * 90.00161 * 9 8 7 11 11 C 1.38367 * 119.99933 * 179.97438 * 10 9 8 12 12 C 1.39710 * 119.43206 * 0.02562 * 11 10 9 13 13 C 1.36558 * 119.49569 * 179.97438 * 12 11 10 14 14 C 1.41331 * 118.40923 * 359.97438 * 13 12 11 15 15 C 1.41199 * 120.57013 * 180.27645 * 14 13 12 16 16 H 1.08005 * 119.99655 * 154.59933 * 15 14 13 17 17 C 1.39873 * 120.00071 * 334.59455 * 15 14 13 18 18 N 1.30906 * 119.99751 * 344.03440 * 17 15 14 19 19 Si 1.86796 * 119.99856 * 164.02997 * 17 15 14 20 20 H 1.48508 * 109.46783 * 60.00485 * 19 17 15 21 21 H 1.48501 * 109.46756 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47382 * 300.00447 * 19 17 15 23 23 C 1.40751 * 118.85610 * 359.97438 * 14 13 12 24 24 C 1.50700 * 119.81525 * 180.02562 * 23 14 13 25 25 N 1.31484 * 120.37162 * 0.02562 * 23 14 13 26 26 C 1.36621 * 120.51452 * 0.27941 * 8 7 6 27 27 C 1.39687 * 119.79400 * 359.45481 * 26 8 7 28 28 H 1.08994 * 109.47203 * 270.00214 * 1 2 3 29 29 H 1.09003 * 109.46372 * 30.00358 * 1 2 3 30 30 H 1.09003 * 109.46846 * 149.99542 * 1 2 3 31 31 H 1.07998 * 120.10454 * 359.96685 * 6 5 4 32 32 H 1.08000 * 119.69780 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.47221 * 330.01056 * 9 8 7 34 34 H 1.09000 * 109.47285 * 210.00135 * 9 8 7 35 35 H 0.97003 * 119.99948 * 0.02562 * 10 9 8 36 36 H 1.08000 * 120.25242 * 359.95681 * 12 11 10 37 37 H 1.07998 * 120.79988 * 180.02562 * 13 12 11 38 38 H 0.96996 * 119.99679 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.47600 * 90.00165 * 24 23 14 40 40 H 1.08998 * 109.47181 * 209.99902 * 24 23 14 41 41 H 1.08996 * 109.47303 * 329.99963 * 24 23 14 42 42 H 1.08000 * 120.10282 * 179.70768 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2750 1.0457 0.0000 4 8 3.6299 0.6430 0.0006 5 6 3.6954 -0.7037 0.0004 6 6 4.7494 -1.6093 0.0012 7 6 4.4894 -2.9626 0.0013 8 6 3.1830 -3.4310 0.0010 9 6 2.9208 -4.9150 0.0005 10 7 2.8357 -5.3963 1.3816 11 6 2.5985 -6.7359 1.6340 12 6 2.4425 -7.6192 0.5629 13 6 2.2089 -8.9416 0.8106 14 6 2.1336 -9.3709 2.1550 15 6 1.8996 -10.7288 2.4633 16 1 2.2360 -11.1342 3.4061 17 6 1.2322 -11.5489 1.5476 18 7 0.5554 -11.0147 0.5627 19 14 1.3069 -13.4065 1.7302 20 1 0.7367 -13.7979 3.0444 21 1 0.5235 -14.0427 0.6408 22 1 2.7201 -13.8554 1.6502 23 6 2.3022 -8.4226 3.1813 24 6 2.2266 -8.8567 4.6225 25 7 2.5252 -7.1600 2.8898 26 6 2.1328 -2.5571 -0.0050 27 6 2.3745 -1.1813 0.0006 28 1 -0.3633 0.0000 1.0276 29 1 -0.3632 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 5.7692 -1.2537 0.0017 32 1 5.3097 -3.6651 0.0023 33 1 3.7341 -5.4275 -0.5133 34 1 1.9812 -5.1178 -0.5135 35 1 2.9450 -4.7756 2.1191 36 1 2.5059 -7.2588 -0.4532 37 1 2.0854 -9.6429 -0.0014 38 1 0.0929 -11.5834 -0.0725 39 1 3.2204 -9.1403 4.9691 40 1 1.8509 -8.0339 5.2306 41 1 1.5541 -9.7099 4.7102 42 1 1.1188 -2.9289 -0.0099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160868990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:42 Heat of formation + Delta-G solvation = 89.222957 kcal Electronic energy + Delta-G solvation = -25228.141694 eV Core-core repulsion = 21561.092018 eV Total energy + Delta-G solvation = -3667.049676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.00305 -38.93193 -38.25191 -35.29196 -34.92412 -33.64767 -31.61507 -30.89381 -30.70419 -29.60082 -29.02144 -26.90283 -25.72601 -24.05645 -23.56394 -21.99559 -21.24352 -20.71078 -19.93508 -17.55100 -17.30214 -17.22881 -16.46266 -16.27743 -15.58547 -15.29818 -14.97061 -14.48289 -14.03171 -13.81337 -13.68069 -13.63973 -13.61365 -13.46761 -13.06658 -12.70210 -12.62961 -12.37017 -12.01723 -11.80164 -11.61402 -11.51622 -11.41287 -11.27172 -11.17995 -11.12151 -11.06371 -10.84452 -10.56871 -9.72674 -9.38000 -9.20095 -8.77243 -8.67367 -8.16829 -8.01805 -6.83370 -6.60446 -4.19701 0.36647 0.95397 1.76518 2.26054 2.72681 2.96687 3.07048 3.10139 3.24723 3.28361 3.73851 3.94522 3.94783 4.22644 4.31408 4.59363 4.68436 4.85864 4.91570 5.01356 5.04512 5.09825 5.22099 5.50684 5.54766 5.65428 5.74147 5.75241 5.84152 5.90095 5.99573 6.31577 6.35443 6.37821 6.47818 6.52507 6.68178 6.79860 6.97733 7.04157 7.21110 7.37059 7.45372 7.72304 7.89319 8.23848 8.41711 8.63213 8.83954 8.90725 9.72140 10.22877 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025195 B = 0.002253 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.050049 B =12422.352932 C =12547.485098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.136 3.864 3 N -0.296 5.296 4 O -0.097 6.097 5 C 0.086 3.914 6 C -0.130 4.130 7 C -0.038 4.038 8 C -0.123 4.123 9 C 0.187 3.813 10 N -0.742 5.742 11 C 0.283 3.717 12 C -0.208 4.208 13 C -0.092 4.092 14 C 0.034 3.966 15 C -0.453 4.453 16 H 0.079 0.921 17 C 0.073 3.927 18 N -0.807 5.807 19 Si 0.907 3.093 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.265 1.265 23 C 0.037 3.963 24 C -0.070 4.070 25 N -0.520 5.520 26 C -0.018 4.018 27 C -0.201 4.201 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.390 0.610 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.279 0.721 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.744 14.165 -4.187 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 N -0.041 5.041 4 O -0.106 6.106 5 C 0.032 3.968 6 C -0.150 4.150 7 C -0.058 4.058 8 C -0.124 4.124 9 C 0.062 3.938 10 N -0.382 5.382 11 C 0.050 3.950 12 C -0.232 4.232 13 C -0.118 4.118 14 C 0.029 3.971 15 C -0.484 4.484 16 H 0.098 0.902 17 C -0.143 4.143 18 N -0.433 5.433 19 Si 0.732 3.268 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.190 1.190 23 C -0.102 4.102 24 C -0.128 4.128 25 N -0.236 5.236 26 C -0.038 4.038 27 C -0.205 4.205 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.223 0.777 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.848 15.977 -3.903 16.550 hybrid contribution -0.135 -1.917 -0.546 1.998 sum 1.714 14.060 -4.449 14.846 Atomic orbital electron populations 1.20487 0.84440 1.04928 1.04711 1.24624 0.98128 0.89667 0.92032 1.79846 0.85246 1.18372 1.20682 1.89133 1.22470 1.17482 1.81529 1.20314 0.95324 0.84759 0.96374 1.20036 0.97274 0.90833 1.06813 1.21165 0.97044 0.94112 0.93459 1.19657 0.92771 0.96235 1.03689 1.19864 1.01200 0.87308 0.85443 1.43601 1.84117 1.05807 1.04676 1.17645 1.03685 0.84386 0.89243 1.20786 1.10818 0.94957 0.96638 1.21284 0.98968 0.93886 0.97675 1.18163 0.93677 0.93938 0.91316 1.19316 1.32454 0.93657 1.02992 0.90246 1.25859 0.93023 1.01082 0.94304 1.69805 1.22986 1.37690 1.12860 0.86385 0.79303 0.82322 0.78798 1.19058 1.20513 1.18981 1.20726 1.07184 0.87151 0.95145 1.20251 1.00523 1.00177 0.91858 1.66293 1.18653 1.18834 1.19840 1.20398 1.00138 0.89573 0.93719 1.20679 0.91079 0.95049 1.13666 0.88603 0.89454 0.88915 0.84247 0.83867 0.92020 0.92110 0.77690 0.88531 0.85523 0.91016 0.93431 0.93447 0.91342 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.48 36.01 0.38 -0.19 16 2 C 0.14 1.45 7.46 -80.12 -0.60 0.85 16 3 N -0.30 -3.84 12.81 34.91 0.45 -3.40 16 4 O -0.10 -1.32 12.06 7.67 0.09 -1.23 16 5 C 0.09 1.05 7.48 -38.47 -0.29 0.77 16 6 C -0.13 -1.32 10.07 -39.47 -0.40 -1.72 16 7 C -0.04 -0.38 9.66 -39.54 -0.38 -0.76 16 8 C -0.12 -1.37 5.21 -105.00 -0.55 -1.91 16 9 C 0.19 2.47 4.98 -5.19 -0.03 2.44 16 10 N -0.74 -12.60 5.70 -61.53 -0.35 -12.95 16 11 C 0.28 6.16 7.64 -155.12 -1.19 4.98 16 12 C -0.21 -4.64 9.24 -39.64 -0.37 -5.00 16 13 C -0.09 -2.29 8.73 -39.01 -0.34 -2.63 16 14 C 0.03 0.88 5.58 -106.65 -0.59 0.29 16 15 C -0.45 -11.54 8.14 -37.85 -0.31 -11.85 16 16 H 0.08 1.93 6.86 -52.48 -0.36 1.57 16 17 C 0.07 1.78 5.19 -17.33 -0.09 1.69 16 18 N -0.81 -20.27 10.94 55.54 0.61 -19.66 16 19 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 23 C 0.04 0.90 6.86 -81.79 -0.56 0.34 16 24 C -0.07 -1.48 9.57 36.01 0.34 -1.13 16 25 N -0.52 -12.40 10.29 -8.05 -0.08 -12.48 16 26 C -0.02 -0.19 9.67 -39.62 -0.38 -0.57 16 27 C -0.20 -2.31 6.33 -105.16 -0.67 -2.98 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.06 0.80 7.84 -51.93 -0.41 0.39 16 34 H 0.06 0.80 7.83 -51.93 -0.41 0.40 16 35 H 0.39 6.42 8.58 -40.82 -0.35 6.07 16 36 H 0.10 1.88 6.64 -52.49 -0.35 1.53 16 37 H 0.13 3.24 6.25 -52.49 -0.33 2.91 16 38 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.41 6.77 -51.93 -0.35 1.06 16 42 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -29.89 358.97 -9.99 -39.87 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.07 Total: 8.61 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -6.01 Total: -17.38 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.62 Total: -48.50 kcal Atomic # 8 Polarization: -1.32 SS G_CDS: 0.09 Total: -1.23 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.89 -9.99 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160868990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.097 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds