Wall clock time and date at job start Tue Mar 31 2020 14:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38688 * 119.27531 * 2 1 4 4 C 1.38003 * 119.62563 * 179.97438 * 3 2 1 5 5 C 1.41004 * 118.28598 * 359.75428 * 4 3 2 6 6 C 1.41019 * 120.70766 * 180.24700 * 5 4 3 7 7 H 1.07998 * 119.99819 * 154.92323 * 6 5 4 8 8 C 1.39947 * 119.99933 * 334.91287 * 6 5 4 9 9 N 1.30861 * 119.99962 * 343.59135 * 8 6 5 10 10 Si 1.86799 * 119.99758 * 163.58557 * 8 6 5 11 11 H 1.48505 * 109.47172 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47221 * 120.00267 * 10 8 6 13 13 H 1.48498 * 109.47280 * 240.00493 * 10 8 6 14 14 C 1.41705 * 118.58361 * 0.48538 * 5 4 3 15 15 N 1.38100 * 119.90562 * 179.78131 * 14 5 4 16 16 C 1.46494 * 119.99933 * 179.72546 * 15 14 5 17 17 C 1.53001 * 109.46769 * 179.97438 * 16 15 14 18 18 H 1.09004 * 110.56772 * 52.32308 * 17 16 15 19 19 C 1.51139 * 110.51018 * 175.00094 * 17 16 15 20 20 C 1.37685 * 132.84953 * 298.62159 * 19 17 16 21 21 C 1.38393 * 119.91495 * 180.02562 * 20 19 17 22 22 C 1.38304 * 119.82282 * 359.97438 * 21 20 19 23 23 C 1.37938 * 120.37876 * 0.02562 * 22 21 20 24 24 C 1.38901 * 106.34325 * 118.65050 * 19 17 16 25 25 N 1.39529 * 110.22803 * 359.97438 * 24 19 17 26 26 C 1.34366 * 112.24902 * 0.02562 * 25 24 19 27 27 O 1.21283 * 126.44623 * 179.97438 * 26 25 24 28 28 N 1.31973 * 119.28237 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.46762 * 270.01559 * 1 2 3 30 30 H 1.08998 * 109.47231 * 30.02190 * 1 2 3 31 31 H 1.09006 * 109.46865 * 150.02516 * 1 2 3 32 32 H 1.08000 * 120.18507 * 0.02562 * 3 2 1 33 33 H 1.08007 * 120.85643 * 180.02562 * 4 3 2 34 34 H 0.97003 * 119.99912 * 180.02562 * 9 8 6 35 35 H 0.96998 * 119.99666 * 359.72199 * 15 14 5 36 36 H 1.08995 * 109.47552 * 59.99950 * 16 15 14 37 37 H 1.08994 * 109.47350 * 299.99646 * 16 15 14 38 38 H 1.08002 * 120.04139 * 0.02562 * 20 19 17 39 39 H 1.07996 * 120.08642 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.81001 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.93499 * 179.97438 * 23 22 21 42 42 H 0.97005 * 123.87438 * 179.73771 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 0.0005 5 6 4.2409 -0.0194 0.0064 6 6 5.6502 -0.0703 0.0124 7 1 6.1575 -0.9355 0.4131 8 6 6.3913 1.0001 -0.5009 9 7 5.8120 1.8896 -1.2662 10 14 8.2074 1.1591 -0.0936 11 1 8.6185 0.0332 0.7831 12 1 9.0010 1.1242 -1.3483 13 1 8.4465 2.4460 0.6077 14 6 3.4738 -1.2108 0.0009 15 7 4.1075 -2.4378 0.0019 16 6 3.3164 -3.6707 0.0023 17 6 4.2551 -4.8789 0.0027 18 1 4.9826 -4.7983 0.8104 19 6 3.4665 -6.1623 0.1265 20 6 2.6277 -6.6556 1.1005 21 6 2.0318 -7.8938 0.9358 22 6 2.2812 -8.6305 -0.2077 23 6 3.1211 -8.1386 -1.1851 24 6 3.7254 -6.8929 -1.0261 25 7 4.5984 -6.1898 -1.8570 26 6 4.9568 -5.0057 -1.3329 27 8 5.7024 -4.1915 -1.8350 28 7 2.1525 -1.1511 0.0005 29 1 -0.3633 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6364 2.1399 0.0004 33 1 4.1134 2.1487 0.0010 34 1 6.3257 2.6313 -1.6224 35 1 5.0764 -2.4832 0.0022 36 1 2.6880 -3.6996 -0.8879 37 1 2.6874 -3.6986 0.8920 38 1 2.4351 -6.0771 1.9919 39 1 1.3737 -8.2836 1.6983 40 1 1.8157 -9.5965 -0.3362 41 1 3.3112 -8.7201 -2.0751 42 1 4.9140 -6.5200 -2.7129 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162614997.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:56 Heat of formation + Delta-G solvation = 30.605047 kcal Electronic energy + Delta-G solvation = -26328.953120 eV Core-core repulsion = 22659.361580 eV Total energy + Delta-G solvation = -3669.591539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.62206 -38.57766 -38.36084 -35.70643 -35.23718 -34.05195 -32.54472 -30.76376 -30.14132 -29.41772 -28.27485 -27.40654 -24.72964 -23.53674 -22.71572 -21.62330 -21.00499 -20.62681 -20.13941 -17.96760 -17.16639 -16.86508 -16.17638 -16.13574 -15.65860 -15.29229 -14.83622 -14.50829 -14.25625 -14.02439 -13.77935 -13.48811 -13.34352 -13.08624 -13.00531 -12.62464 -12.45478 -12.07751 -11.85846 -11.69984 -11.57333 -11.39215 -11.32698 -11.11979 -10.97816 -10.92302 -10.77591 -10.42447 -9.98491 -9.69341 -9.19471 -9.06324 -8.80740 -8.16269 -8.01962 -7.80611 -6.73433 -6.42967 -4.13303 1.02953 1.14073 2.50973 2.77307 2.92645 3.12353 3.15834 3.17545 3.28919 3.61152 3.99791 4.04226 4.12445 4.59644 4.72474 4.78588 4.81182 5.06578 5.12097 5.21897 5.26547 5.53470 5.70775 5.73686 5.87504 5.94623 6.11419 6.18718 6.23403 6.25496 6.31240 6.47827 6.48427 6.50195 6.62076 6.71392 6.87060 6.87590 7.00048 7.20803 7.28352 7.71315 7.85639 7.99300 8.08929 8.34363 8.59134 8.73147 8.86444 9.06526 9.84635 10.27937 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.003925 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.477219 B = 7131.241926 C = 8824.427821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.023 3.977 3 C -0.185 4.185 4 C -0.124 4.124 5 C 0.032 3.968 6 C -0.451 4.451 7 H 0.075 0.925 8 C 0.076 3.924 9 N -0.798 5.798 10 Si 0.906 3.094 11 H -0.261 1.261 12 H -0.276 1.276 13 H -0.273 1.273 14 C 0.309 3.691 15 N -0.728 5.728 16 C 0.176 3.824 17 C -0.097 4.097 18 H 0.127 0.873 19 C -0.129 4.129 20 C -0.059 4.059 21 C -0.144 4.144 22 C -0.086 4.086 23 C -0.144 4.144 24 C 0.149 3.851 25 N -0.665 5.665 26 C 0.530 3.470 27 O -0.475 6.475 28 N -0.530 5.530 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.278 0.722 35 H 0.408 0.592 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 -17.495 2.615 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.151 4.151 5 C 0.025 3.975 6 C -0.482 4.482 7 H 0.093 0.907 8 C -0.141 4.141 9 N -0.425 5.425 10 Si 0.731 3.269 11 H -0.185 1.185 12 H -0.201 1.201 13 H -0.199 1.199 14 C 0.071 3.929 15 N -0.369 5.369 16 C 0.050 3.950 17 C -0.118 4.118 18 H 0.145 0.855 19 C -0.132 4.132 20 C -0.077 4.077 21 C -0.163 4.163 22 C -0.105 4.105 23 C -0.166 4.166 24 C 0.051 3.949 25 N -0.309 5.309 26 C 0.316 3.684 27 O -0.346 6.346 28 N -0.248 5.248 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.660 -17.520 2.245 18.268 hybrid contribution 1.872 0.698 -0.520 2.065 sum -2.787 -16.822 1.726 17.139 Atomic orbital electron populations 1.20272 0.91887 1.00670 1.00202 1.19925 0.94210 0.88008 1.08987 1.21211 0.95349 0.96595 1.07582 1.21326 0.92091 0.98153 1.03509 1.17904 0.93890 0.90030 0.95641 1.19175 0.90770 1.02739 1.35542 0.90698 1.25795 1.00720 0.94885 0.92701 1.69824 1.38336 1.11270 1.23031 0.86293 0.82337 0.79127 0.79154 1.18484 1.20116 1.19878 1.18357 0.87873 0.85387 1.01298 1.43676 1.07684 1.00836 1.84690 1.20546 0.91551 0.81078 1.01865 1.21046 0.98726 0.94778 0.97250 0.85529 1.19693 1.01897 0.95872 0.95753 1.20356 0.94246 0.95313 0.97823 1.21053 1.01744 0.94939 0.98555 1.20854 0.96796 0.99623 0.93227 1.20334 1.00882 0.94081 1.01267 1.18190 0.92518 0.93388 0.90760 1.43802 1.45577 1.19316 1.22216 1.20601 0.80517 0.80111 0.87141 1.90895 1.34522 1.42714 1.66463 1.66321 1.08313 1.29909 1.20248 0.93312 0.92978 0.92874 0.88847 0.85727 0.91099 0.75457 0.92947 0.91628 0.85107 0.85370 0.85399 0.85796 0.75142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.15 36.00 0.37 -0.99 16 2 C 0.02 0.54 6.79 -82.37 -0.56 -0.02 16 3 C -0.18 -4.50 9.69 -39.50 -0.38 -4.89 16 4 C -0.12 -3.32 8.79 -38.62 -0.34 -3.66 16 5 C 0.03 0.88 5.59 -106.47 -0.60 0.28 16 6 C -0.45 -12.02 8.52 -37.89 -0.32 -12.34 16 7 H 0.07 1.91 6.70 -52.49 -0.35 1.56 16 8 C 0.08 1.94 5.19 -17.33 -0.09 1.85 16 9 N -0.80 -21.17 10.95 55.55 0.61 -20.57 16 10 Si 0.91 19.28 29.59 -169.99 -5.03 14.25 16 11 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 14 C 0.31 7.83 7.52 -155.02 -1.17 6.66 16 15 N -0.73 -15.83 5.37 -59.98 -0.32 -16.15 16 16 C 0.18 3.11 5.12 -4.04 -0.02 3.09 16 17 C -0.10 -1.38 3.02 -92.37 -0.28 -1.66 16 18 H 0.13 1.67 8.14 -51.93 -0.42 1.25 16 19 C -0.13 -1.54 5.67 -104.36 -0.59 -2.13 16 20 C -0.06 -0.59 10.04 -39.73 -0.40 -0.99 16 21 C -0.14 -1.19 10.07 -39.50 -0.40 -1.58 16 22 C -0.09 -0.67 10.01 -39.67 -0.40 -1.07 16 23 C -0.14 -1.28 10.07 -39.27 -0.40 -1.67 16 24 C 0.15 1.68 7.11 -83.69 -0.60 1.08 16 25 N -0.67 -8.10 5.88 -9.70 -0.06 -8.16 16 26 C 0.53 8.38 7.93 -10.83 -0.09 8.29 16 27 O -0.48 -9.47 17.36 5.55 0.10 -9.37 16 28 N -0.53 -13.09 9.44 -8.11 -0.08 -13.17 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.12 3.40 6.26 -52.48 -0.33 3.07 16 34 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 35 H 0.41 8.94 6.14 -40.82 -0.25 8.69 16 36 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.41 4.03 8.96 -40.82 -0.37 3.67 16 LS Contribution 356.61 15.07 5.37 5.37 Total: -1.00 -31.98 356.61 -10.74 -42.71 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -5.08 Total: 14.83 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -6.25 Total: -9.74 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.15 Total: -58.04 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.10 Total: -9.37 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.98 -10.74 -42.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162614997.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.319 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds