Wall clock time and date at job start Tue Mar 31 2020 14:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38688 * 119.27531 * 2 1 4 4 C 1.38003 * 119.62563 * 179.97438 * 3 2 1 5 5 C 1.41004 * 118.28598 * 359.75428 * 4 3 2 6 6 C 1.41019 * 120.70766 * 180.24700 * 5 4 3 7 7 H 1.07998 * 119.99819 * 154.92323 * 6 5 4 8 8 C 1.39947 * 119.99933 * 334.91287 * 6 5 4 9 9 N 1.30861 * 119.99962 * 343.59135 * 8 6 5 10 10 Si 1.86799 * 119.99758 * 163.58557 * 8 6 5 11 11 H 1.48505 * 109.47172 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47221 * 120.00267 * 10 8 6 13 13 H 1.48498 * 109.47280 * 240.00493 * 10 8 6 14 14 C 1.41705 * 118.58361 * 0.48538 * 5 4 3 15 15 N 1.38100 * 119.90562 * 179.78131 * 14 5 4 16 16 C 1.46494 * 119.99933 * 179.72546 * 15 14 5 17 17 C 1.53001 * 109.46769 * 179.97438 * 16 15 14 18 18 H 1.09004 * 110.56772 * 52.32308 * 17 16 15 19 19 C 1.51139 * 110.51018 * 175.00094 * 17 16 15 20 20 C 1.37685 * 132.84953 * 298.62159 * 19 17 16 21 21 C 1.38393 * 119.91495 * 180.02562 * 20 19 17 22 22 C 1.38304 * 119.82282 * 359.97438 * 21 20 19 23 23 C 1.37938 * 120.37876 * 0.02562 * 22 21 20 24 24 C 1.38901 * 106.34325 * 118.65050 * 19 17 16 25 25 N 1.39529 * 110.22803 * 359.97438 * 24 19 17 26 26 C 1.34366 * 112.24902 * 0.02562 * 25 24 19 27 27 O 1.21283 * 126.44623 * 179.97438 * 26 25 24 28 28 N 1.31973 * 119.28237 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.46762 * 270.01559 * 1 2 3 30 30 H 1.08998 * 109.47231 * 30.02190 * 1 2 3 31 31 H 1.09006 * 109.46865 * 150.02516 * 1 2 3 32 32 H 1.08000 * 120.18507 * 0.02562 * 3 2 1 33 33 H 1.08007 * 120.85643 * 180.02562 * 4 3 2 34 34 H 0.97003 * 119.99912 * 180.02562 * 9 8 6 35 35 H 0.96998 * 119.99666 * 359.72199 * 15 14 5 36 36 H 1.08995 * 109.47552 * 59.99950 * 16 15 14 37 37 H 1.08994 * 109.47350 * 299.99646 * 16 15 14 38 38 H 1.08002 * 120.04139 * 0.02562 * 20 19 17 39 39 H 1.07996 * 120.08642 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.81001 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.93499 * 179.97438 * 23 22 21 42 42 H 0.97005 * 123.87438 * 179.73771 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 0.0005 5 6 4.2409 -0.0194 0.0064 6 6 5.6502 -0.0703 0.0124 7 1 6.1575 -0.9355 0.4131 8 6 6.3913 1.0001 -0.5009 9 7 5.8120 1.8896 -1.2662 10 14 8.2074 1.1591 -0.0936 11 1 8.6185 0.0332 0.7831 12 1 9.0010 1.1242 -1.3483 13 1 8.4465 2.4460 0.6077 14 6 3.4738 -1.2108 0.0009 15 7 4.1075 -2.4378 0.0019 16 6 3.3164 -3.6707 0.0023 17 6 4.2551 -4.8789 0.0027 18 1 4.9826 -4.7983 0.8104 19 6 3.4665 -6.1623 0.1265 20 6 2.6277 -6.6556 1.1005 21 6 2.0318 -7.8938 0.9358 22 6 2.2812 -8.6305 -0.2077 23 6 3.1211 -8.1386 -1.1851 24 6 3.7254 -6.8929 -1.0261 25 7 4.5984 -6.1898 -1.8570 26 6 4.9568 -5.0057 -1.3329 27 8 5.7024 -4.1915 -1.8350 28 7 2.1525 -1.1511 0.0005 29 1 -0.3633 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6364 2.1399 0.0004 33 1 4.1134 2.1487 0.0010 34 1 6.3257 2.6313 -1.6224 35 1 5.0764 -2.4832 0.0022 36 1 2.6880 -3.6996 -0.8879 37 1 2.6874 -3.6986 0.8920 38 1 2.4351 -6.0771 1.9919 39 1 1.3737 -8.2836 1.6983 40 1 1.8157 -9.5965 -0.3362 41 1 3.3112 -8.7201 -2.0751 42 1 4.9140 -6.5200 -2.7129 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162614997.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:55 Heat of formation + Delta-G solvation = 11.158026 kcal Electronic energy + Delta-G solvation = -26329.796406 eV Core-core repulsion = 22659.361580 eV Total energy + Delta-G solvation = -3670.434826 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.64295 -40.40459 -39.45637 -36.93071 -36.61646 -35.96635 -33.82615 -32.56622 -31.51793 -30.47427 -29.64406 -28.99810 -26.26764 -25.22879 -23.54083 -22.73612 -22.64831 -22.26131 -21.52805 -19.14368 -18.89174 -17.94854 -17.77840 -17.47766 -16.99731 -16.68130 -16.38104 -15.78464 -15.58200 -15.28790 -15.06041 -14.95750 -14.77742 -14.37211 -14.16877 -14.01991 -13.96509 -13.51978 -13.34527 -13.22996 -13.10676 -12.93337 -12.82981 -12.64623 -12.54572 -12.15519 -11.86237 -11.82996 -11.60424 -11.27154 -11.10604 -10.59709 -9.97406 -9.81769 -9.76065 -9.02395 -8.65492 -8.31124 -6.12831 0.18055 0.41306 0.90243 1.21349 1.36488 1.37939 1.48355 1.51171 1.95157 2.21427 2.62727 2.80678 2.88454 3.00626 3.44001 3.76450 3.77530 3.94000 4.08098 4.20542 4.23393 4.45889 4.52634 4.55157 4.64485 4.71232 4.73972 4.78601 4.97237 5.00819 5.06023 5.07865 5.15884 5.19093 5.26039 5.43497 5.48617 5.59628 5.64329 5.76103 5.79990 5.89544 6.08795 6.14646 6.40351 6.75732 6.79037 6.88944 6.90917 7.13297 7.91490 8.38596 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.003925 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.477219 B = 7131.241926 C = 8824.427821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.022 3.978 3 C -0.200 4.200 4 C -0.143 4.143 5 C -0.004 4.004 6 C -0.479 4.479 7 H 0.074 0.926 8 C 0.033 3.967 9 N -0.833 5.833 10 Si 0.978 3.022 11 H -0.258 1.258 12 H -0.272 1.272 13 H -0.262 1.262 14 C 0.299 3.701 15 N -0.726 5.726 16 C 0.184 3.816 17 C -0.089 4.089 18 H 0.133 0.867 19 C -0.146 4.146 20 C -0.069 4.069 21 C -0.135 4.135 22 C -0.081 4.081 23 C -0.138 4.138 24 C 0.125 3.875 25 N -0.652 5.652 26 C 0.522 3.478 27 O -0.531 6.531 28 N -0.538 5.538 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.285 0.715 35 H 0.404 0.596 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.139 0.861 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.149 0.851 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.080 -20.152 3.380 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C -0.222 4.222 4 C -0.170 4.170 5 C -0.011 4.011 6 C -0.511 4.511 7 H 0.092 0.908 8 C -0.180 4.180 9 N -0.461 5.461 10 Si 0.799 3.201 11 H -0.181 1.181 12 H -0.198 1.198 13 H -0.187 1.187 14 C 0.060 3.940 15 N -0.365 5.365 16 C 0.059 3.941 17 C -0.110 4.110 18 H 0.151 0.849 19 C -0.149 4.149 20 C -0.088 4.088 21 C -0.154 4.154 22 C -0.099 4.099 23 C -0.158 4.158 24 C 0.028 3.972 25 N -0.296 5.296 26 C 0.310 3.690 27 O -0.406 6.406 28 N -0.258 5.258 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.241 0.759 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.175 0.825 40 H 0.181 0.819 41 H 0.166 0.834 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -6.269 -20.258 3.020 21.420 hybrid contribution 2.139 1.356 -0.741 2.639 sum -4.130 -18.901 2.279 19.481 Atomic orbital electron populations 1.20339 0.87981 1.02118 1.02036 1.20828 0.96840 0.87402 1.06158 1.21490 0.94644 0.98229 1.07816 1.21363 0.93349 0.97609 1.04678 1.18246 0.94688 0.91010 0.97196 1.19369 0.91141 1.03669 1.36901 0.90806 1.26631 1.05190 0.94173 0.92027 1.69883 1.40240 1.12008 1.23925 0.85221 0.76527 0.79417 0.78927 1.18115 1.19763 1.18704 1.18660 0.88370 0.86306 1.00618 1.43816 1.07788 1.01218 1.83656 1.20549 0.91771 0.80776 1.01025 1.20874 0.98547 0.94727 0.96864 0.84935 1.19623 1.03219 0.94802 0.97239 1.20591 0.94084 0.96394 0.97687 1.21458 1.00863 0.93799 0.99281 1.21330 0.95618 1.00706 0.92234 1.20716 0.99827 0.92882 1.02400 1.18446 0.93551 0.94649 0.90512 1.43598 1.45114 1.18260 1.22600 1.20811 0.80026 0.80544 0.87638 1.90856 1.37125 1.44739 1.67884 1.66508 1.07832 1.30448 1.20975 0.91127 0.90744 0.92219 0.86333 0.87247 0.90479 0.75919 0.94901 0.90908 0.84351 0.82511 0.81902 0.83373 0.73958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.34 10.15 71.24 0.72 -1.62 16 2 C 0.02 1.04 6.79 42.64 0.29 1.33 16 3 C -0.20 -9.79 9.69 22.32 0.22 -9.57 16 4 C -0.14 -7.97 8.79 22.89 0.20 -7.77 16 5 C 0.00 -0.25 5.59 -21.06 -0.12 -0.37 16 6 C -0.48 -26.82 8.52 23.37 0.20 -26.62 16 7 H 0.07 3.98 6.70 -2.91 -0.02 3.96 16 8 C 0.03 1.76 5.19 85.25 0.44 2.20 16 9 N -0.83 -45.96 10.95 21.83 0.24 -45.72 16 10 Si 0.98 40.73 29.59 68.60 2.03 42.76 16 11 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 13 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 14 C 0.30 15.72 7.52 134.05 1.01 16.72 16 15 N -0.73 -33.03 5.37 -343.67 -1.84 -34.88 16 16 C 0.18 6.70 5.12 86.38 0.44 7.14 16 17 C -0.09 -2.60 3.02 -11.93 -0.04 -2.64 16 18 H 0.13 3.64 8.14 -2.39 -0.02 3.62 16 19 C -0.15 -3.35 5.67 -19.70 -0.11 -3.46 16 20 C -0.07 -1.24 10.04 22.18 0.22 -1.01 16 21 C -0.14 -1.70 10.07 22.32 0.22 -1.48 16 22 C -0.08 -0.89 10.01 22.21 0.22 -0.67 16 23 C -0.14 -1.98 10.07 22.47 0.23 -1.75 16 24 C 0.12 2.63 7.11 38.35 0.27 2.91 16 25 N -0.65 -15.87 5.88 -303.22 -1.78 -17.66 16 26 C 0.52 17.23 7.93 87.94 0.70 17.93 16 27 O -0.53 -22.49 17.36 -3.04 -0.05 -22.55 16 28 N -0.54 -26.90 9.44 -179.56 -1.70 -28.59 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 31 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 33 H 0.11 6.29 6.26 -2.91 -0.02 6.27 16 34 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 35 H 0.40 18.83 6.14 -92.71 -0.57 18.26 16 36 H 0.03 1.32 8.12 -2.39 -0.02 1.30 16 37 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 40 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 41 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.42 8.21 8.96 -92.70 -0.83 7.38 16 Total: -1.00 -73.36 356.61 1.69 -71.67 By element: Atomic # 1 Polarization: 44.01 SS G_CDS: -0.32 Total: 43.69 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 5.12 Total: -8.73 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -5.08 Total: -126.85 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -73.36 1.69 -71.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162614997.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.826 kcal (2) G-P(sol) polarization free energy of solvation -73.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds