Wall clock time and date at job start Tue Mar 31 2020 14:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38684 * 119.27782 * 2 1 4 4 C 1.38001 * 119.62463 * 180.02562 * 3 2 1 5 5 C 1.41004 * 118.28606 * 0.24639 * 4 3 2 6 6 C 1.41017 * 120.70852 * 179.74780 * 5 4 3 7 7 H 1.07995 * 119.99804 * 150.04075 * 6 5 4 8 8 C 1.39941 * 120.00282 * 330.04834 * 6 5 4 9 9 N 1.30866 * 120.00601 * 162.11638 * 8 6 5 10 10 Si 1.86800 * 119.99782 * 342.11240 * 8 6 5 11 11 H 1.48502 * 109.47002 * 95.38009 * 10 8 6 12 12 H 1.48508 * 109.47275 * 215.37771 * 10 8 6 13 13 H 1.48496 * 109.47399 * 335.38169 * 10 8 6 14 14 C 1.41707 * 118.58294 * 359.49621 * 5 4 3 15 15 N 1.38096 * 119.90511 * 180.26542 * 14 5 4 16 16 C 1.46495 * 119.99906 * 180.25534 * 15 14 5 17 17 C 1.53004 * 109.46754 * 179.97438 * 16 15 14 18 18 H 1.08999 * 110.45603 * 307.59472 * 17 16 15 19 19 C 1.51134 * 110.50988 * 184.99772 * 17 16 15 20 20 C 1.37685 * 132.84523 * 61.32716 * 19 17 16 21 21 C 1.38398 * 119.90955 * 180.02562 * 20 19 17 22 22 C 1.38304 * 119.82855 * 359.93781 * 21 20 19 23 23 C 1.37939 * 120.37326 * 0.05097 * 22 21 20 24 24 C 1.38894 * 106.34460 * 241.35470 * 19 17 16 25 25 N 1.39529 * 110.23117 * 359.97438 * 24 19 17 26 26 C 1.34380 * 112.24112 * 0.02562 * 25 24 19 27 27 O 1.21288 * 126.44018 * 180.02562 * 26 25 24 28 28 N 1.31966 * 119.27283 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47017 * 89.99556 * 1 2 3 30 30 H 1.08999 * 109.47164 * 210.00117 * 1 2 3 31 31 H 1.08999 * 109.46947 * 330.00306 * 1 2 3 32 32 H 1.07998 * 120.18585 * 0.02637 * 3 2 1 33 33 H 1.08005 * 120.85873 * 179.97438 * 4 3 2 34 34 H 0.96995 * 120.00427 * 179.97438 * 9 8 6 35 35 H 0.96999 * 119.99806 * 0.24806 * 15 14 5 36 36 H 1.08999 * 109.47094 * 299.99415 * 16 15 14 37 37 H 1.09001 * 109.47302 * 59.99549 * 16 15 14 38 38 H 1.07992 * 120.04821 * 0.03351 * 20 19 17 39 39 H 1.08004 * 120.08605 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.81225 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.92918 * 179.97438 * 23 22 21 42 42 H 0.96996 * 123.88180 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.2097 0.0000 4 6 3.5653 1.2180 -0.0005 5 6 4.2410 -0.0196 -0.0064 6 6 5.6502 -0.0706 -0.0126 7 1 6.1624 -0.9011 0.4503 8 6 6.3849 0.9549 -0.6183 9 7 7.6537 1.1059 -0.3355 10 14 5.5546 2.1081 -1.8307 11 1 5.1125 3.3362 -1.1224 12 1 6.5146 2.4738 -2.9031 13 1 4.3766 1.4315 -2.4304 14 6 3.4737 -1.2109 -0.0005 15 7 4.1073 -2.4379 -0.0005 16 6 3.3161 -3.6709 -0.0001 17 6 4.2548 -4.8791 -0.0008 18 1 4.9800 -4.7976 -0.8105 19 6 3.4660 -6.1624 -0.1237 20 6 2.6259 -6.6555 -1.0967 21 6 2.0294 -7.8932 -0.9309 22 6 2.2810 -8.6306 0.2117 23 6 3.1225 -8.1390 1.1879 24 6 3.7256 -6.8927 1.0289 25 7 4.6001 -6.1900 1.8586 26 6 4.9580 -5.0058 1.3339 27 8 5.7046 -4.1918 1.8350 28 7 2.1523 -1.1511 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6366 2.1399 0.0004 33 1 4.1136 2.1485 -0.0010 34 1 8.1630 1.8165 -0.7557 35 1 5.0763 -2.4834 -0.0009 36 1 2.6878 -3.6990 0.8901 37 1 2.6871 -3.6993 -0.8899 38 1 2.4327 -6.0773 -1.9881 39 1 1.3702 -8.2829 -1.6926 40 1 1.8156 -9.5967 0.3407 41 1 3.3136 -8.7207 2.0776 42 1 4.9131 -6.5182 2.7160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162614998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:00 Heat of formation + Delta-G solvation = 31.573479 kcal Electronic energy + Delta-G solvation = -26377.471168 eV Core-core repulsion = 22707.921623 eV Total energy + Delta-G solvation = -3669.549545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.64921 -38.81667 -38.42788 -35.73882 -35.36869 -33.99659 -32.62240 -31.46644 -30.32252 -29.49799 -28.36591 -27.61976 -24.83460 -23.41200 -22.73921 -21.65930 -21.40873 -20.69598 -20.30714 -17.98883 -17.32392 -16.91538 -16.30046 -16.19973 -15.80601 -15.32642 -15.06883 -14.61729 -14.29128 -14.05730 -13.68426 -13.53867 -13.46958 -13.26710 -13.11709 -12.85071 -12.71647 -12.21322 -12.02499 -11.88041 -11.73902 -11.65630 -11.46291 -11.13219 -11.04817 -10.94502 -10.68732 -10.23873 -10.01063 -9.84243 -9.33383 -9.08776 -8.97708 -8.18502 -8.12018 -8.08072 -6.88856 -6.68024 -4.28178 1.00855 1.12160 2.48229 2.57801 2.81675 2.90406 3.13391 3.22978 3.34989 3.59053 3.99433 4.02319 4.06235 4.53960 4.61061 4.71273 4.79298 5.02529 5.09664 5.18146 5.24444 5.44879 5.51872 5.67965 5.72491 5.91331 5.97151 6.04610 6.15981 6.20269 6.26260 6.29279 6.34173 6.42031 6.45773 6.51039 6.67427 6.69260 6.85035 6.94637 7.14098 7.36427 7.63507 7.86483 7.96470 8.15117 8.39058 8.45420 8.76157 8.84396 9.62514 10.13342 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014494 B = 0.003754 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.421854 B = 7457.112886 C = 8597.288516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.025 3.975 3 C -0.166 4.166 4 C -0.199 4.199 5 C 0.016 3.984 6 C -0.440 4.440 7 H 0.093 0.907 8 C 0.085 3.915 9 N -0.810 5.810 10 Si 0.910 3.090 11 H -0.271 1.271 12 H -0.292 1.292 13 H -0.247 1.247 14 C 0.330 3.670 15 N -0.724 5.724 16 C 0.174 3.826 17 C -0.097 4.097 18 H 0.129 0.871 19 C -0.129 4.129 20 C -0.059 4.059 21 C -0.144 4.144 22 C -0.086 4.086 23 C -0.144 4.144 24 C 0.149 3.851 25 N -0.665 5.665 26 C 0.530 3.470 27 O -0.476 6.476 28 N -0.526 5.526 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.284 0.716 35 H 0.412 0.588 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.701 -16.827 -1.170 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 C -0.189 4.189 4 C -0.225 4.225 5 C 0.009 3.991 6 C -0.470 4.470 7 H 0.111 0.889 8 C -0.133 4.133 9 N -0.434 5.434 10 Si 0.737 3.263 11 H -0.198 1.198 12 H -0.220 1.220 13 H -0.170 1.170 14 C 0.090 3.910 15 N -0.364 5.364 16 C 0.048 3.952 17 C -0.119 4.119 18 H 0.147 0.853 19 C -0.132 4.132 20 C -0.077 4.077 21 C -0.163 4.163 22 C -0.105 4.105 23 C -0.165 4.165 24 C 0.052 3.948 25 N -0.309 5.309 26 C 0.317 3.683 27 O -0.346 6.346 28 N -0.244 5.244 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.094 0.906 35 H 0.251 0.749 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -8.629 -16.971 -0.952 19.063 hybrid contribution 0.902 1.165 0.037 1.474 sum -7.727 -15.806 -0.914 17.618 Atomic orbital electron populations 1.20290 0.91437 1.00917 1.00515 1.19951 0.94462 0.87732 1.08589 1.21082 0.94623 0.97079 1.06092 1.21005 0.93562 0.96671 1.11225 1.18044 0.94292 0.90312 0.96498 1.19156 0.89271 1.07157 1.31397 0.88937 1.26071 0.94648 0.96343 0.96268 1.69715 1.08951 1.28966 1.35799 0.86314 0.79750 0.80251 0.80011 1.19770 1.21953 1.17005 1.18311 0.87755 0.85371 0.99577 1.43786 1.08112 1.00819 1.83713 1.20600 0.91601 0.80978 1.02061 1.21038 0.98746 0.94669 0.97413 0.85330 1.19676 1.01903 0.95878 0.95777 1.20358 0.94230 0.95338 0.97803 1.21058 1.01738 0.94925 0.98553 1.20859 0.96762 0.99617 0.93234 1.20339 1.00870 0.94036 1.01293 1.18187 0.92489 0.93399 0.90771 1.43798 1.45554 1.19365 1.22158 1.20589 0.80512 0.80149 0.87093 1.90900 1.34412 1.42836 1.66499 1.66396 1.08115 1.29864 1.20066 0.93063 0.92578 0.92797 0.88322 0.87526 0.90590 0.74938 0.92716 0.91368 0.85091 0.85360 0.85382 0.85774 0.75102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.15 36.01 0.37 -0.91 16 2 C 0.03 0.56 6.79 -82.37 -0.56 0.00 16 3 C -0.17 -3.78 9.69 -39.50 -0.38 -4.17 16 4 C -0.20 -4.97 7.28 -38.62 -0.28 -5.25 16 5 C 0.02 0.42 5.12 -106.47 -0.55 -0.13 16 6 C -0.44 -11.94 8.94 -37.89 -0.34 -12.28 16 7 H 0.09 2.64 7.01 -52.49 -0.37 2.27 16 8 C 0.09 2.25 5.42 -17.33 -0.09 2.16 16 9 N -0.81 -21.84 13.93 55.55 0.77 -21.06 16 10 Si 0.91 21.19 24.53 -169.99 -4.17 17.02 16 11 H -0.27 -6.17 6.71 56.52 0.38 -5.79 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.25 -5.95 6.85 56.52 0.39 -5.56 16 14 C 0.33 8.04 7.52 -155.02 -1.17 6.87 16 15 N -0.72 -15.31 5.37 -59.97 -0.32 -15.63 16 16 C 0.17 2.95 5.12 -4.04 -0.02 2.93 16 17 C -0.10 -1.36 3.02 -92.37 -0.28 -1.64 16 18 H 0.13 1.70 8.14 -51.93 -0.42 1.28 16 19 C -0.13 -1.50 5.67 -104.37 -0.59 -2.10 16 20 C -0.06 -0.57 10.04 -39.72 -0.40 -0.97 16 21 C -0.14 -1.16 10.07 -39.50 -0.40 -1.55 16 22 C -0.09 -0.65 10.02 -39.67 -0.40 -1.05 16 23 C -0.14 -1.24 10.07 -39.27 -0.40 -1.64 16 24 C 0.15 1.64 7.11 -83.69 -0.60 1.04 16 25 N -0.66 -7.90 5.88 -9.70 -0.06 -7.95 16 26 C 0.53 8.23 7.93 -10.83 -0.09 8.14 16 27 O -0.48 -9.37 17.36 5.55 0.10 -9.28 16 28 N -0.53 -12.32 9.44 -8.11 -0.08 -12.40 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.11 2.64 4.82 -52.48 -0.25 2.39 16 34 H 0.28 6.96 8.30 -40.82 -0.34 6.63 16 35 H 0.41 8.98 6.22 -40.82 -0.25 8.73 16 36 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 41 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 42 H 0.41 3.92 8.96 -40.82 -0.37 3.56 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -31.81 351.50 -9.68 -41.48 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -5.06 Total: 13.06 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -6.16 Total: -10.54 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.32 Total: -57.05 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.10 Total: -9.28 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.17 Total: 17.02 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.81 -9.68 -41.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162614998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.058 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds