Wall clock time and date at job start Tue Mar 31 2020 14:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38684 * 119.27782 * 2 1 4 4 C 1.38001 * 119.62463 * 180.02562 * 3 2 1 5 5 C 1.41004 * 118.28606 * 0.24639 * 4 3 2 6 6 C 1.41017 * 120.70852 * 179.74780 * 5 4 3 7 7 H 1.07995 * 119.99804 * 150.04075 * 6 5 4 8 8 C 1.39941 * 120.00282 * 330.04834 * 6 5 4 9 9 N 1.30866 * 120.00601 * 162.11638 * 8 6 5 10 10 Si 1.86800 * 119.99782 * 342.11240 * 8 6 5 11 11 H 1.48502 * 109.47002 * 95.38009 * 10 8 6 12 12 H 1.48508 * 109.47275 * 215.37771 * 10 8 6 13 13 H 1.48496 * 109.47399 * 335.38169 * 10 8 6 14 14 C 1.41707 * 118.58294 * 359.49621 * 5 4 3 15 15 N 1.38096 * 119.90511 * 180.26542 * 14 5 4 16 16 C 1.46495 * 119.99906 * 180.25534 * 15 14 5 17 17 C 1.53004 * 109.46754 * 179.97438 * 16 15 14 18 18 H 1.08999 * 110.45603 * 307.59472 * 17 16 15 19 19 C 1.51134 * 110.50988 * 184.99772 * 17 16 15 20 20 C 1.37685 * 132.84523 * 61.32716 * 19 17 16 21 21 C 1.38398 * 119.90955 * 180.02562 * 20 19 17 22 22 C 1.38304 * 119.82855 * 359.93781 * 21 20 19 23 23 C 1.37939 * 120.37326 * 0.05097 * 22 21 20 24 24 C 1.38894 * 106.34460 * 241.35470 * 19 17 16 25 25 N 1.39529 * 110.23117 * 359.97438 * 24 19 17 26 26 C 1.34380 * 112.24112 * 0.02562 * 25 24 19 27 27 O 1.21288 * 126.44018 * 180.02562 * 26 25 24 28 28 N 1.31966 * 119.27283 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47017 * 89.99556 * 1 2 3 30 30 H 1.08999 * 109.47164 * 210.00117 * 1 2 3 31 31 H 1.08999 * 109.46947 * 330.00306 * 1 2 3 32 32 H 1.07998 * 120.18585 * 0.02637 * 3 2 1 33 33 H 1.08005 * 120.85873 * 179.97438 * 4 3 2 34 34 H 0.96995 * 120.00427 * 179.97438 * 9 8 6 35 35 H 0.96999 * 119.99806 * 0.24806 * 15 14 5 36 36 H 1.08999 * 109.47094 * 299.99415 * 16 15 14 37 37 H 1.09001 * 109.47302 * 59.99549 * 16 15 14 38 38 H 1.07992 * 120.04821 * 0.03351 * 20 19 17 39 39 H 1.08004 * 120.08605 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.81225 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.92918 * 179.97438 * 23 22 21 42 42 H 0.96996 * 123.88180 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.2097 0.0000 4 6 3.5653 1.2180 -0.0005 5 6 4.2410 -0.0196 -0.0064 6 6 5.6502 -0.0706 -0.0126 7 1 6.1624 -0.9011 0.4503 8 6 6.3849 0.9549 -0.6183 9 7 7.6537 1.1059 -0.3355 10 14 5.5546 2.1081 -1.8307 11 1 5.1125 3.3362 -1.1224 12 1 6.5146 2.4738 -2.9031 13 1 4.3766 1.4315 -2.4304 14 6 3.4737 -1.2109 -0.0005 15 7 4.1073 -2.4379 -0.0005 16 6 3.3161 -3.6709 -0.0001 17 6 4.2548 -4.8791 -0.0008 18 1 4.9800 -4.7976 -0.8105 19 6 3.4660 -6.1624 -0.1237 20 6 2.6259 -6.6555 -1.0967 21 6 2.0294 -7.8932 -0.9309 22 6 2.2810 -8.6306 0.2117 23 6 3.1225 -8.1390 1.1879 24 6 3.7256 -6.8927 1.0289 25 7 4.6001 -6.1900 1.8586 26 6 4.9580 -5.0058 1.3339 27 8 5.7046 -4.1918 1.8350 28 7 2.1523 -1.1511 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6366 2.1399 0.0004 33 1 4.1136 2.1485 -0.0010 34 1 8.1630 1.8165 -0.7557 35 1 5.0763 -2.4834 -0.0009 36 1 2.6878 -3.6990 0.8901 37 1 2.6871 -3.6993 -0.8899 38 1 2.4327 -6.0773 -1.9881 39 1 1.3702 -8.2829 -1.6926 40 1 1.8156 -9.5967 0.3407 41 1 3.3136 -8.7207 2.0776 42 1 4.9131 -6.5182 2.7160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162614998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:59 Heat of formation + Delta-G solvation = 10.831435 kcal Electronic energy + Delta-G solvation = -26378.370610 eV Core-core repulsion = 22707.921623 eV Total energy + Delta-G solvation = -3670.448988 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.66216 -40.62804 -39.47734 -37.01504 -36.64967 -35.90366 -33.91733 -33.27805 -31.61231 -30.49812 -29.71521 -29.12127 -26.30267 -25.10267 -23.55996 -23.12232 -22.70251 -22.26272 -21.59009 -19.30357 -18.91256 -18.07444 -17.83996 -17.59531 -17.06699 -16.70758 -16.61201 -15.80706 -15.44759 -15.27982 -15.23392 -15.02356 -14.93427 -14.78991 -14.20882 -14.17593 -13.99665 -13.66172 -13.64455 -13.39775 -13.08020 -13.00292 -12.81428 -12.70624 -12.50328 -12.06933 -11.87828 -11.83736 -11.76698 -11.29995 -11.27402 -10.69424 -10.01538 -9.95139 -9.81607 -9.03426 -8.85547 -8.49973 -6.28760 0.16945 0.40671 0.71447 0.91179 1.24759 1.36076 1.36803 1.47422 1.93402 2.12406 2.54625 2.66383 2.86938 2.98775 3.40908 3.54774 3.72562 3.92771 4.03914 4.10608 4.22757 4.26950 4.45427 4.53430 4.57943 4.63073 4.67301 4.70258 4.84058 4.87449 5.00602 5.01307 5.06828 5.15437 5.24718 5.31939 5.47891 5.51216 5.58846 5.63627 5.72691 5.75914 6.01814 6.08007 6.21551 6.42540 6.66739 6.78535 6.87680 6.95572 7.76192 8.22847 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014494 B = 0.003754 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.421854 B = 7457.112886 C = 8597.288516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.037 3.963 3 C -0.184 4.184 4 C -0.200 4.200 5 C -0.017 4.017 6 C -0.467 4.467 7 H 0.057 0.943 8 C 0.049 3.951 9 N -0.853 5.853 10 Si 0.965 3.035 11 H -0.259 1.259 12 H -0.278 1.278 13 H -0.260 1.260 14 C 0.321 3.679 15 N -0.725 5.725 16 C 0.181 3.819 17 C -0.091 4.091 18 H 0.130 0.870 19 C -0.145 4.145 20 C -0.069 4.069 21 C -0.135 4.135 22 C -0.080 4.080 23 C -0.137 4.137 24 C 0.125 3.875 25 N -0.651 5.651 26 C 0.522 3.478 27 O -0.533 6.533 28 N -0.534 5.534 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.291 0.709 35 H 0.405 0.595 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.149 0.851 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.595 -18.507 -2.180 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 C -0.206 4.206 4 C -0.226 4.226 5 C -0.024 4.024 6 C -0.499 4.499 7 H 0.075 0.925 8 C -0.165 4.165 9 N -0.480 5.480 10 Si 0.789 3.211 11 H -0.184 1.184 12 H -0.204 1.204 13 H -0.184 1.184 14 C 0.081 3.919 15 N -0.363 5.363 16 C 0.056 3.944 17 C -0.112 4.112 18 H 0.148 0.852 19 C -0.148 4.148 20 C -0.087 4.087 21 C -0.153 4.153 22 C -0.098 4.098 23 C -0.158 4.158 24 C 0.028 3.972 25 N -0.295 5.295 26 C 0.310 3.690 27 O -0.409 6.409 28 N -0.253 5.253 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.153 0.847 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.242 0.758 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.157 0.843 39 H 0.175 0.825 40 H 0.181 0.819 41 H 0.166 0.834 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -12.545 -18.740 -1.960 22.636 hybrid contribution 1.809 1.464 0.386 2.359 sum -10.735 -17.275 -1.574 20.400 Atomic orbital electron populations 1.20410 0.87369 1.02693 1.02399 1.20986 0.97177 0.87181 1.04301 1.21467 0.93795 0.99006 1.06326 1.21237 0.94960 0.96180 1.10206 1.18200 0.94007 0.91732 0.98479 1.19019 0.90138 1.07181 1.33523 0.92482 1.26692 0.95048 0.97490 0.97255 1.69748 1.10096 1.30538 1.37618 0.85477 0.78526 0.78709 0.78358 1.18444 1.20434 1.18385 1.18604 0.88327 0.86079 0.98917 1.43990 1.08121 1.01494 1.82647 1.20635 0.91731 0.80449 1.01549 1.20876 0.98586 0.94946 0.96804 0.85247 1.19600 1.03200 0.94753 0.97271 1.20592 0.94062 0.96425 0.97642 1.21464 1.00853 0.93763 0.99264 1.21335 0.95582 1.00697 0.92235 1.20720 0.99810 0.92804 1.02430 1.18445 0.93514 0.94669 0.90533 1.43593 1.45089 1.18266 1.22541 1.20814 0.79995 0.80582 0.87620 1.90866 1.37087 1.44950 1.67979 1.66610 1.07355 1.30644 1.20728 0.90939 0.91876 0.90034 0.84740 0.87633 0.89818 0.75785 0.94097 0.90470 0.84313 0.82480 0.81876 0.83353 0.73930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.16 10.15 71.24 0.72 -1.44 16 2 C 0.04 1.57 6.79 42.65 0.29 1.86 16 3 C -0.18 -7.95 9.69 22.32 0.22 -7.74 16 4 C -0.20 -9.98 7.28 22.89 0.17 -9.82 16 5 C -0.02 -0.90 5.12 -21.06 -0.11 -1.01 16 6 C -0.47 -27.13 8.94 23.36 0.21 -26.92 16 7 H 0.06 3.59 7.01 -2.91 -0.02 3.57 16 8 C 0.05 2.71 5.42 85.25 0.46 3.17 16 9 N -0.85 -48.46 13.93 21.83 0.30 -48.16 16 10 Si 0.97 44.57 24.53 68.60 1.68 46.25 16 11 H -0.26 -11.31 6.71 99.48 0.67 -10.64 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.26 -12.39 6.85 99.48 0.68 -11.71 16 14 C 0.32 16.05 7.52 134.05 1.01 17.06 16 15 N -0.72 -32.47 5.37 -343.65 -1.85 -34.31 16 16 C 0.18 6.39 5.12 86.38 0.44 6.83 16 17 C -0.09 -2.67 3.02 -11.93 -0.04 -2.70 16 18 H 0.13 3.69 8.14 -2.39 -0.02 3.67 16 19 C -0.14 -3.29 5.67 -19.70 -0.11 -3.41 16 20 C -0.07 -1.20 10.04 22.18 0.22 -0.98 16 21 C -0.13 -1.64 10.07 22.32 0.22 -1.41 16 22 C -0.08 -0.86 10.02 22.21 0.22 -0.64 16 23 C -0.14 -1.92 10.07 22.47 0.23 -1.70 16 24 C 0.12 2.60 7.11 38.35 0.27 2.87 16 25 N -0.65 -15.80 5.88 -303.21 -1.78 -17.59 16 26 C 0.52 17.34 7.93 87.94 0.70 18.04 16 27 O -0.53 -23.00 17.36 -3.06 -0.05 -23.05 16 28 N -0.53 -24.68 9.44 -179.56 -1.70 -26.37 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 2.06 8.07 -2.39 -0.02 2.05 16 32 H 0.13 4.80 8.06 -2.91 -0.02 4.77 16 33 H 0.11 5.20 4.82 -2.91 -0.01 5.19 16 34 H 0.29 14.92 8.30 -92.71 -0.77 14.15 16 35 H 0.41 19.35 6.22 -92.71 -0.58 18.77 16 36 H 0.04 1.55 8.12 -2.39 -0.02 1.53 16 37 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 39 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 40 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 41 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 42 H 0.42 8.19 8.96 -92.71 -0.83 7.36 16 Total: -1.00 -73.71 351.50 1.35 -72.36 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: -0.39 Total: 38.79 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.13 Total: -7.92 kcal Atomic # 7 Polarization: -121.41 SS G_CDS: -5.02 Total: -126.43 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.05 Total: -23.05 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.68 Total: 46.25 kcal Total: -73.71 1.35 -72.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162614998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.192 kcal (2) G-P(sol) polarization free energy of solvation -73.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds