Wall clock time and date at job start Tue Mar 31 2020 14:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31483 * 119.81494 * 2 1 4 4 C 1.32736 * 121.73000 * 179.97438 * 3 2 1 5 5 N 1.38370 * 119.43216 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00346 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47461 * 180.02562 * 6 5 4 8 8 H 1.08998 * 110.55872 * 307.67379 * 7 6 5 9 9 C 1.51133 * 110.50873 * 184.99979 * 7 6 5 10 10 C 1.37677 * 132.85689 * 61.33237 * 9 7 6 11 11 C 1.38389 * 119.91765 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.82801 * 359.97438 * 11 10 9 13 13 C 1.37944 * 120.37336 * 359.97438 * 12 11 10 14 14 C 1.38904 * 106.34100 * 241.35121 * 9 7 6 15 15 N 1.39532 * 110.22847 * 0.02562 * 14 9 7 16 16 C 1.34379 * 112.24521 * 0.02562 * 15 14 9 17 17 O 1.21286 * 126.44184 * 180.02562 * 16 15 14 18 18 C 1.39713 * 121.13949 * 0.25945 * 4 3 2 19 19 C 1.36564 * 119.49154 * 359.48061 * 18 4 3 20 20 C 1.40751 * 119.81183 * 179.97438 * 2 1 3 21 21 C 1.41200 * 120.57510 * 359.97438 * 20 2 1 22 22 H 1.07994 * 119.99837 * 24.88062 * 21 20 2 23 23 C 1.39874 * 120.00279 * 204.87772 * 21 20 2 24 24 N 1.30901 * 119.99534 * 14.72402 * 23 21 20 25 25 Si 1.86793 * 120.00215 * 194.72371 * 23 21 20 26 26 H 1.48504 * 109.47153 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47405 * 119.99800 * 25 23 21 28 28 H 1.48503 * 109.47144 * 240.00320 * 25 23 21 29 29 H 1.08995 * 109.47458 * 89.99801 * 1 2 3 30 30 H 1.09008 * 109.47178 * 209.99996 * 1 2 3 31 31 H 1.09006 * 109.47253 * 329.99792 * 1 2 3 32 32 H 0.97001 * 119.99593 * 0.02562 * 5 4 3 33 33 H 1.08997 * 109.47386 * 59.99677 * 6 5 4 34 34 H 1.09003 * 109.46657 * 300.00189 * 6 5 4 35 35 H 1.08005 * 120.03927 * 359.97438 * 10 9 7 36 36 H 1.08004 * 120.08661 * 180.02562 * 11 10 9 37 37 H 1.08001 * 119.81960 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.93152 * 179.97438 * 13 12 11 39 39 H 0.96998 * 123.88002 * 179.73480 * 15 14 9 40 40 H 1.08004 * 120.25280 * 179.72636 * 18 4 3 41 41 H 1.07996 * 120.79863 * 180.26851 * 19 18 4 42 42 H 0.97006 * 119.99736 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4874 1.1852 0.0005 5 7 4.1267 2.4123 -0.0001 6 6 5.5902 2.4759 -0.0001 7 6 6.0373 3.9391 -0.0001 8 1 5.5526 4.4874 -0.8079 9 6 7.5406 4.0335 -0.1235 10 6 8.4274 3.6315 -1.0969 11 6 9.7828 3.8566 -0.9314 12 6 10.2410 4.4856 0.2119 13 6 9.3546 4.8904 1.1883 14 6 7.9884 4.6658 1.0294 15 7 6.9106 4.9744 1.8601 16 6 5.7364 4.5844 1.3359 17 8 4.6412 4.7247 1.8379 18 6 4.2494 0.0142 -0.0044 19 6 3.6199 -1.1977 0.0011 20 6 2.2068 -1.2212 0.0005 21 6 1.5090 -2.4488 0.0016 22 1 0.5044 -2.4992 -0.3914 23 6 2.1190 -3.5996 0.5118 24 7 3.2008 -3.4980 1.2417 25 14 1.3899 -5.2811 0.1513 26 1 0.1757 -5.1244 -0.6893 27 1 2.3888 -6.1094 -0.5707 28 1 1.0249 -5.9464 1.4279 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 3.6057 3.2305 -0.0004 33 1 5.9756 1.9778 -0.8898 34 1 5.9754 1.9786 0.8902 35 1 8.0657 3.1402 -1.9882 36 1 10.4808 3.5427 -1.6934 37 1 11.2988 4.6616 0.3408 38 1 9.7203 5.3805 2.0784 39 1 6.9992 5.4156 2.7193 40 1 5.3282 0.0670 -0.0083 41 1 4.1881 -2.1161 0.0018 42 1 3.6236 -4.2960 1.5958 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162616738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:06 Heat of formation + Delta-G solvation = 13.271348 kcal Electronic energy + Delta-G solvation = -25823.044583 eV Core-core repulsion = 22152.701398 eV Total energy + Delta-G solvation = -3670.343185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.66941 -40.47789 -39.47369 -37.27029 -36.68076 -35.55440 -33.79744 -32.77547 -31.84748 -30.54740 -29.38155 -28.67147 -26.42126 -25.50109 -23.55538 -23.15357 -22.40224 -22.21776 -21.31418 -19.11152 -18.92217 -18.14663 -17.86650 -17.33119 -16.94512 -16.70803 -16.54472 -15.83641 -15.41288 -15.30949 -15.18787 -14.98981 -14.78763 -14.42465 -14.23837 -14.00798 -13.89587 -13.50880 -13.46251 -13.24957 -13.00513 -12.89769 -12.79261 -12.69468 -12.58767 -12.17646 -11.87597 -11.83670 -11.50720 -11.30659 -11.16349 -10.38062 -10.01681 -9.88619 -9.82583 -9.04049 -8.62871 -8.37582 -6.08986 0.16022 0.39793 0.88581 1.14129 1.35856 1.42956 1.56469 1.58182 1.93814 2.26504 2.50203 2.84740 2.86423 2.97687 3.39848 3.72673 3.76643 3.91745 4.05297 4.17818 4.21894 4.44687 4.51074 4.57323 4.59795 4.65721 4.69212 4.71955 4.79320 5.00279 5.05748 5.06802 5.14923 5.22213 5.38974 5.47035 5.54956 5.58111 5.63382 5.66151 5.74513 5.90062 6.02270 6.07198 6.49885 6.62533 6.84235 6.87711 6.96965 7.11945 7.88721 8.44018 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018503 B = 0.002786 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.933228 B =10047.853972 C =10954.110983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.020 3.980 3 N -0.540 5.540 4 C 0.288 3.712 5 N -0.736 5.736 6 C 0.172 3.828 7 C -0.083 4.083 8 H 0.139 0.861 9 C -0.147 4.147 10 C -0.068 4.068 11 C -0.137 4.137 12 C -0.082 4.082 13 C -0.138 4.138 14 C 0.125 3.875 15 N -0.653 5.653 16 C 0.524 3.476 17 O -0.532 6.532 18 C -0.215 4.215 19 C -0.108 4.108 20 C -0.002 4.002 21 C -0.478 4.478 22 H 0.083 0.917 23 C 0.030 3.970 24 N -0.841 5.841 25 Si 0.982 3.018 26 H -0.256 1.256 27 H -0.267 1.267 28 H -0.271 1.271 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.395 0.605 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.142 0.858 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.147 0.853 39 H 0.421 0.579 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.267 13.245 -3.409 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.118 4.118 3 N -0.257 5.257 4 C 0.054 3.946 5 N -0.375 5.375 6 C 0.047 3.953 7 C -0.104 4.104 8 H 0.156 0.844 9 C -0.150 4.150 10 C -0.087 4.087 11 C -0.156 4.156 12 C -0.100 4.100 13 C -0.159 4.159 14 C 0.029 3.971 15 N -0.296 5.296 16 C 0.312 3.688 17 O -0.408 6.408 18 C -0.239 4.239 19 C -0.134 4.134 20 C -0.008 4.008 21 C -0.509 4.509 22 H 0.101 0.899 23 C -0.182 4.182 24 N -0.469 5.469 25 Si 0.804 3.196 26 H -0.180 1.180 27 H -0.192 1.192 28 H -0.196 1.196 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.229 0.771 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.160 0.840 36 H 0.173 0.827 37 H 0.178 0.822 38 H 0.165 0.835 39 H 0.261 0.739 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.436 13.837 -3.056 21.702 hybrid contribution -0.103 -0.960 0.766 1.233 sum 16.334 12.877 -2.290 20.925 Atomic orbital electron populations 1.20241 0.89061 1.01463 1.01356 1.21310 0.96485 0.87267 1.06731 1.66435 1.08257 1.31209 1.19756 1.18009 0.88125 0.86278 1.02164 1.43708 1.04587 1.03970 1.85220 1.20820 0.80081 0.92804 1.01580 1.20796 0.95285 0.97343 0.96996 0.84367 1.19619 0.92662 1.05630 0.97121 1.20608 0.92838 0.97457 0.97776 1.21466 0.94733 1.00159 0.99202 1.21327 1.00771 0.95535 0.92345 1.20711 0.88401 1.04462 1.02329 1.18424 0.89448 0.98660 0.90596 1.43627 1.05836 1.57742 1.22411 1.20791 0.83262 0.77175 0.87595 1.90830 1.25271 1.56686 1.67976 1.20976 0.99339 0.92310 1.11292 1.21361 0.95056 0.96639 1.00387 1.18527 0.92904 0.94053 0.95268 1.19593 1.01804 0.92660 1.36881 0.89923 1.26716 0.94780 1.04763 0.91991 1.69884 1.19128 1.32471 1.25436 0.85150 0.79290 0.76329 0.78876 1.17976 1.19161 1.19622 0.91797 0.91406 0.92467 0.77078 0.89945 0.94152 0.84000 0.82690 0.82163 0.83502 0.73933 0.86225 0.86364 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.83 9.58 71.24 0.68 -2.15 16 2 C 0.02 1.08 6.86 43.23 0.30 1.37 16 3 N -0.54 -28.17 10.29 -179.37 -1.85 -30.02 16 4 C 0.29 13.93 7.64 133.32 1.02 14.94 16 5 N -0.74 -28.80 5.46 -344.86 -1.88 -30.68 16 6 C 0.17 5.20 4.31 86.38 0.37 5.58 16 7 C -0.08 -2.00 3.03 -11.93 -0.04 -2.03 16 8 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16 9 C -0.15 -2.83 5.67 -19.70 -0.11 -2.94 16 10 C -0.07 -1.01 10.03 22.17 0.22 -0.79 16 11 C -0.14 -1.46 10.07 22.32 0.22 -1.24 16 12 C -0.08 -0.78 10.02 22.21 0.22 -0.55 16 13 C -0.14 -1.71 10.07 22.47 0.23 -1.48 16 14 C 0.12 2.26 7.11 38.35 0.27 2.53 16 15 N -0.65 -13.53 5.88 -303.21 -1.78 -15.31 16 16 C 0.52 14.75 7.93 87.94 0.70 15.45 16 17 O -0.53 -19.60 17.36 -3.05 -0.05 -19.65 16 18 C -0.22 -10.47 9.24 22.23 0.21 -10.26 16 19 C -0.11 -5.83 8.73 22.64 0.20 -5.64 16 20 C 0.00 -0.13 5.59 -21.18 -0.12 -0.25 16 21 C -0.48 -25.80 8.16 23.39 0.19 -25.61 16 22 H 0.08 4.24 6.83 -2.91 -0.02 4.22 16 23 C 0.03 1.51 5.22 85.23 0.45 1.96 16 24 N -0.84 -44.64 10.83 21.82 0.24 -44.41 16 25 Si 0.98 38.67 29.58 68.60 2.03 40.70 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 27 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 28 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 29 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.07 2.97 6.75 -2.38 -0.02 2.96 16 31 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 32 H 0.39 15.50 8.05 -92.71 -0.75 14.76 16 33 H 0.08 2.25 7.89 -2.39 -0.02 2.23 16 34 H 0.04 1.34 7.89 -2.39 -0.02 1.32 16 35 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 37 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 38 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 39 H 0.42 6.86 8.96 -92.71 -0.83 6.03 16 40 H 0.12 5.06 6.64 -2.91 -0.02 5.04 16 41 H 0.12 6.56 6.16 -2.91 -0.02 6.54 16 42 H 0.28 13.67 8.30 -92.70 -0.77 12.90 16 Total: -1.00 -71.74 354.13 1.22 -70.52 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: -0.49 Total: 39.96 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 5.01 Total: -11.11 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -5.28 Total: -120.42 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.05 Total: -19.65 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -71.74 1.22 -70.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162616738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.794 kcal (2) G-P(sol) polarization free energy of solvation -71.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds