Wall clock time and date at job start Tue Mar 31 2020 14:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34069 * 124.94813 * 2 1 4 4 C 1.46530 * 106.16211 * 179.97438 * 3 2 1 5 5 C 1.40588 * 105.48679 * 0.02562 * 4 3 2 6 6 C 1.39392 * 118.04441 * 179.97438 * 5 4 3 7 7 C 1.36667 * 119.18767 * 0.02562 * 6 5 4 8 8 N 1.32323 * 121.77233 * 359.74877 * 7 6 5 9 9 C 1.32408 * 121.97859 * 0.52825 * 8 7 6 10 10 N 1.38784 * 120.09825 * 179.74157 * 9 8 7 11 11 C 1.46894 * 111.00368 * 59.03189 * 10 9 8 12 12 C 1.50706 * 109.46855 * 68.95184 * 11 10 9 13 13 H 1.07996 * 120.00110 * 4.61420 * 12 11 10 14 14 C 1.37878 * 119.99655 * 184.61710 * 12 11 10 15 15 N 1.31515 * 120.00107 * 354.26390 * 14 12 11 16 16 Si 1.86797 * 119.99796 * 174.27211 * 14 12 11 17 17 H 1.48503 * 109.47491 * 94.92339 * 16 14 12 18 18 H 1.48502 * 109.47329 * 214.92648 * 16 14 12 19 19 H 1.48501 * 109.47174 * 334.92340 * 16 14 12 20 20 C 1.46905 * 111.00203 * 295.07632 * 10 9 8 21 21 C 1.50696 * 109.47146 * 190.00304 * 20 10 9 22 22 C 1.38674 * 120.41674 * 270.25902 * 21 20 10 23 23 C 1.38636 * 118.41810 * 180.22281 * 22 21 20 24 24 C 1.38224 * 119.16016 * 359.47902 * 23 22 21 25 25 N 1.31856 * 120.76491 * 0.30555 * 24 23 22 26 26 C 1.31888 * 121.72472 * 359.96719 * 25 24 23 27 27 O 1.34366 * 107.37496 * 359.97438 * 5 4 3 28 28 H 1.08997 * 109.47033 * 184.88527 * 1 2 3 29 29 H 1.08998 * 109.46719 * 304.88217 * 1 2 3 30 30 H 1.08998 * 109.46932 * 64.88299 * 1 2 3 31 31 H 1.07993 * 126.92114 * 0.03627 * 3 2 1 32 32 H 1.07997 * 120.40228 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.11158 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.47387 * 188.94962 * 11 10 9 35 35 H 1.08999 * 109.47394 * 308.95324 * 11 10 9 36 36 H 0.97007 * 119.99708 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.46627 * 70.00067 * 20 10 9 38 38 H 1.09000 * 109.47026 * 310.00782 * 20 10 9 39 39 H 1.07998 * 120.79227 * 359.97438 * 22 21 20 40 40 H 1.07993 * 120.42206 * 179.75813 * 23 22 21 41 41 H 1.08003 * 119.62041 * 180.27371 * 24 23 22 42 42 H 1.08007 * 119.61599 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2751 1.0989 0.0000 4 6 3.6623 0.6270 0.0006 5 6 3.5814 -0.7765 0.0004 6 6 4.7719 -1.5016 0.0003 7 6 5.9617 -0.8292 0.0010 8 7 6.0149 0.4929 -0.0031 9 6 4.9209 1.2387 0.0021 10 7 5.0222 2.6229 0.0029 11 6 5.7594 3.0975 -1.1757 12 6 4.9330 2.8615 -2.4137 13 1 3.9288 2.4738 -2.3268 14 6 5.4592 3.1404 -3.6572 15 7 6.6369 3.7169 -3.7587 16 14 4.4992 2.6997 -5.1978 17 1 3.7218 3.8808 -5.6516 18 1 5.4425 2.2870 -6.2679 19 1 3.5698 1.5806 -4.8988 20 6 5.6456 3.1045 1.2429 21 6 5.5177 4.6041 1.3198 22 6 6.4996 5.4211 0.7801 23 6 6.3422 6.7950 0.8783 24 6 5.2145 7.3012 1.4968 25 7 4.2987 6.4939 1.9949 26 6 4.4179 5.1823 1.9244 27 8 2.2781 -1.1033 0.0002 28 1 -0.3633 -1.0239 0.0875 29 1 -0.3633 0.5877 0.8430 30 1 -0.3633 0.4362 -0.9305 31 1 1.9390 2.1252 0.0005 32 1 4.7541 -2.5814 0.0005 33 1 6.8834 -1.3923 0.0006 34 1 5.9626 4.1634 -1.0723 35 1 6.7009 2.5545 -1.2584 36 1 7.0069 3.9135 -4.6337 37 1 6.7001 2.8289 1.2501 38 1 5.1461 2.6527 2.0999 39 1 7.3683 4.9972 0.2983 40 1 7.0890 7.4613 0.4726 41 1 5.0822 8.3703 1.5734 42 1 3.6468 4.5529 2.3436 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164010630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:31 Heat of formation + Delta-G solvation = 91.823830 kcal Electronic energy + Delta-G solvation = -26974.427893 eV Core-core repulsion = 23307.490999 eV Total energy + Delta-G solvation = -3666.936894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.30948 -39.94259 -39.00897 -36.35345 -33.07767 -32.79121 -32.15782 -31.51627 -31.34444 -29.77859 -27.54208 -26.87769 -24.99155 -23.57296 -23.05042 -22.21564 -21.85855 -21.25713 -19.88846 -17.45509 -16.84109 -16.72680 -16.25326 -16.13539 -15.86799 -15.55700 -15.09913 -14.87587 -14.49587 -14.04485 -13.82160 -13.37690 -13.14233 -13.08261 -13.00783 -12.81951 -12.67310 -12.61588 -12.38098 -12.15490 -11.97625 -11.44977 -11.33082 -10.98768 -10.71663 -10.66461 -10.06697 -9.76887 -9.47089 -9.33921 -9.30846 -9.08747 -8.91658 -8.67156 -8.43520 -7.79562 -7.64913 -6.07635 -4.06559 1.12483 1.46473 1.66197 1.70132 2.61703 2.83537 3.28166 3.34619 3.39708 4.04943 4.15329 4.39249 4.53781 4.63931 4.76709 4.96617 5.10017 5.13464 5.20685 5.23964 5.30204 5.34832 5.40544 5.42263 5.44303 5.49532 5.63611 5.69426 5.76029 5.94470 6.02112 6.08609 6.14203 6.20497 6.26539 6.49749 6.60751 6.68083 6.69326 7.02864 7.09379 7.29498 7.37705 7.66419 7.99082 8.08922 8.29456 8.36033 8.45746 8.99007 9.56274 11.03312 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008401 B = 0.005637 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3332.041310 B = 4965.673704 C = 6400.749617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.003 4.003 3 C -0.153 4.153 4 C -0.155 4.155 5 C 0.087 3.913 6 C -0.183 4.183 7 C 0.126 3.874 8 N -0.521 5.521 9 C 0.404 3.596 10 N -0.486 5.486 11 C 0.192 3.808 12 C -0.507 4.507 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.104 3.896 21 C -0.115 4.115 22 C -0.053 4.053 23 C -0.173 4.173 24 C 0.089 3.911 25 N -0.493 5.493 26 C 0.114 3.886 27 O -0.193 6.193 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.162 0.838 32 H 0.135 0.865 33 H 0.159 0.841 34 H 0.043 0.957 35 H 0.015 0.985 36 H 0.261 0.739 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.149 0.851 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 -3.892 11.024 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.049 4.049 3 C -0.173 4.173 4 C -0.160 4.160 5 C 0.032 3.968 6 C -0.204 4.204 7 C -0.026 4.026 8 N -0.235 5.235 9 C 0.170 3.830 10 N -0.210 5.210 11 C 0.069 3.931 12 C -0.546 4.546 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.023 4.023 21 C -0.117 4.117 22 C -0.079 4.079 23 C -0.193 4.193 24 C -0.068 4.068 25 N -0.201 5.201 26 C -0.043 4.043 27 O -0.094 6.094 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.180 0.820 32 H 0.153 0.847 33 H 0.176 0.824 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.166 0.834 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.469 -3.185 11.259 12.916 hybrid contribution 0.429 -1.175 -1.725 2.130 sum -5.040 -4.360 9.534 11.632 Atomic orbital electron populations 1.20336 0.84881 1.03790 1.03827 1.22316 0.93837 0.83602 1.05173 1.22149 0.89897 0.99446 1.05816 1.20386 0.94867 0.92614 1.08136 1.19664 0.83590 0.93496 1.00081 1.20533 0.88525 1.00755 1.10572 1.21957 0.96314 0.89843 0.94534 1.67969 1.32522 1.07151 1.15847 1.19255 0.86010 0.90223 0.87502 1.60423 1.53696 1.02872 1.04049 1.20019 0.92483 0.96253 0.84383 1.21084 1.00496 1.42987 0.90033 0.92130 1.24890 0.95109 0.95136 0.98944 1.69948 1.17439 1.41769 1.24158 0.86574 0.79791 0.78823 0.82870 1.20604 1.21128 1.19919 1.20852 0.98623 0.90123 0.92704 1.20681 0.95741 0.96329 0.98960 1.21600 0.98725 0.93390 0.94203 1.22067 0.99878 0.95971 1.01409 1.22624 0.90103 0.99567 0.94535 1.67646 1.29191 1.05053 1.18231 1.22512 0.95430 0.90714 0.95673 1.83836 1.14617 1.34445 1.76536 0.90720 0.89448 0.89542 0.82041 0.84733 0.82422 0.93897 0.96663 0.92925 0.92882 0.90948 0.84712 0.85121 0.83360 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.39 36.01 0.37 -0.33 16 2 C 0.00 -0.04 7.24 -35.77 -0.26 -0.30 16 3 C -0.15 -2.62 11.00 -37.71 -0.41 -3.04 16 4 C -0.16 -3.05 6.37 -105.03 -0.67 -3.72 16 5 C 0.09 1.55 7.49 -38.27 -0.29 1.26 16 6 C -0.18 -2.87 10.08 -39.72 -0.40 -3.27 16 7 C 0.13 2.08 11.08 -17.91 -0.20 1.88 16 8 N -0.52 -10.57 9.56 -12.54 -0.12 -10.69 16 9 C 0.40 8.49 4.69 -154.92 -0.73 7.77 16 10 N -0.49 -10.39 4.46 -175.73 -0.78 -11.17 16 11 C 0.19 4.88 4.50 -4.98 -0.02 4.86 16 12 C -0.51 -14.32 8.74 -34.44 -0.30 -14.62 16 13 H 0.06 1.74 7.79 -52.49 -0.41 1.34 16 14 C 0.06 1.74 5.45 -17.82 -0.10 1.64 16 15 N -0.89 -26.30 13.30 55.43 0.74 -25.56 16 16 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.10 1.86 4.96 -4.98 -0.02 1.84 16 21 C -0.11 -1.97 4.93 -104.48 -0.52 -2.48 16 22 C -0.05 -0.89 8.01 -39.27 -0.31 -1.20 16 23 C -0.17 -2.58 10.11 -39.44 -0.40 -2.98 16 24 C 0.09 1.31 11.18 -17.55 -0.20 1.11 16 25 N -0.49 -8.13 10.36 -13.25 -0.14 -8.26 16 26 C 0.11 1.86 10.86 -17.55 -0.19 1.67 16 27 O -0.19 -3.21 10.57 4.73 0.05 -3.16 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.16 2.61 8.06 -52.49 -0.42 2.19 16 32 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 34 H 0.04 1.13 5.30 -51.93 -0.28 0.85 16 35 H 0.02 0.43 7.58 -51.93 -0.39 0.04 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.07 1.15 8.01 -51.93 -0.42 0.74 16 39 H 0.14 2.31 7.82 -52.49 -0.41 1.90 16 40 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.15 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.15 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -33.54 361.85 -9.73 -43.27 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.26 Total: 2.94 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -4.64 Total: -9.92 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.30 Total: -55.69 kcal Atomic # 8 Polarization: -3.21 SS G_CDS: 0.05 Total: -3.16 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.54 -9.73 -43.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.092 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds