Wall clock time and date at job start Tue Mar 31 2020 14:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34069 * 124.94813 * 2 1 4 4 C 1.46530 * 106.16211 * 179.97438 * 3 2 1 5 5 C 1.40588 * 105.48679 * 0.02562 * 4 3 2 6 6 C 1.39392 * 118.04441 * 179.97438 * 5 4 3 7 7 C 1.36667 * 119.18767 * 0.02562 * 6 5 4 8 8 N 1.32323 * 121.77233 * 359.74877 * 7 6 5 9 9 C 1.32408 * 121.97859 * 0.52825 * 8 7 6 10 10 N 1.38784 * 120.09825 * 179.74157 * 9 8 7 11 11 C 1.46894 * 111.00368 * 59.03189 * 10 9 8 12 12 C 1.50706 * 109.46855 * 68.95184 * 11 10 9 13 13 H 1.07996 * 120.00110 * 4.61420 * 12 11 10 14 14 C 1.37878 * 119.99655 * 184.61710 * 12 11 10 15 15 N 1.31515 * 120.00107 * 354.26390 * 14 12 11 16 16 Si 1.86797 * 119.99796 * 174.27211 * 14 12 11 17 17 H 1.48503 * 109.47491 * 94.92339 * 16 14 12 18 18 H 1.48502 * 109.47329 * 214.92648 * 16 14 12 19 19 H 1.48501 * 109.47174 * 334.92340 * 16 14 12 20 20 C 1.46905 * 111.00203 * 295.07632 * 10 9 8 21 21 C 1.50696 * 109.47146 * 190.00304 * 20 10 9 22 22 C 1.38674 * 120.41674 * 270.25902 * 21 20 10 23 23 C 1.38636 * 118.41810 * 180.22281 * 22 21 20 24 24 C 1.38224 * 119.16016 * 359.47902 * 23 22 21 25 25 N 1.31856 * 120.76491 * 0.30555 * 24 23 22 26 26 C 1.31888 * 121.72472 * 359.96719 * 25 24 23 27 27 O 1.34366 * 107.37496 * 359.97438 * 5 4 3 28 28 H 1.08997 * 109.47033 * 184.88527 * 1 2 3 29 29 H 1.08998 * 109.46719 * 304.88217 * 1 2 3 30 30 H 1.08998 * 109.46932 * 64.88299 * 1 2 3 31 31 H 1.07993 * 126.92114 * 0.03627 * 3 2 1 32 32 H 1.07997 * 120.40228 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.11158 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.47387 * 188.94962 * 11 10 9 35 35 H 1.08999 * 109.47394 * 308.95324 * 11 10 9 36 36 H 0.97007 * 119.99708 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.46627 * 70.00067 * 20 10 9 38 38 H 1.09000 * 109.47026 * 310.00782 * 20 10 9 39 39 H 1.07998 * 120.79227 * 359.97438 * 22 21 20 40 40 H 1.07993 * 120.42206 * 179.75813 * 23 22 21 41 41 H 1.08003 * 119.62041 * 180.27371 * 24 23 22 42 42 H 1.08007 * 119.61599 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2751 1.0989 0.0000 4 6 3.6623 0.6270 0.0006 5 6 3.5814 -0.7765 0.0004 6 6 4.7719 -1.5016 0.0003 7 6 5.9617 -0.8292 0.0010 8 7 6.0149 0.4929 -0.0031 9 6 4.9209 1.2387 0.0021 10 7 5.0222 2.6229 0.0029 11 6 5.7594 3.0975 -1.1757 12 6 4.9330 2.8615 -2.4137 13 1 3.9288 2.4738 -2.3268 14 6 5.4592 3.1404 -3.6572 15 7 6.6369 3.7169 -3.7587 16 14 4.4992 2.6997 -5.1978 17 1 3.7218 3.8808 -5.6516 18 1 5.4425 2.2870 -6.2679 19 1 3.5698 1.5806 -4.8988 20 6 5.6456 3.1045 1.2429 21 6 5.5177 4.6041 1.3198 22 6 6.4996 5.4211 0.7801 23 6 6.3422 6.7950 0.8783 24 6 5.2145 7.3012 1.4968 25 7 4.2987 6.4939 1.9949 26 6 4.4179 5.1823 1.9244 27 8 2.2781 -1.1033 0.0002 28 1 -0.3633 -1.0239 0.0875 29 1 -0.3633 0.5877 0.8430 30 1 -0.3633 0.4362 -0.9305 31 1 1.9390 2.1252 0.0005 32 1 4.7541 -2.5814 0.0005 33 1 6.8834 -1.3923 0.0006 34 1 5.9626 4.1634 -1.0723 35 1 6.7009 2.5545 -1.2584 36 1 7.0069 3.9135 -4.6337 37 1 6.7001 2.8289 1.2501 38 1 5.1461 2.6527 2.0999 39 1 7.3683 4.9972 0.2983 40 1 7.0890 7.4613 0.4726 41 1 5.0822 8.3703 1.5734 42 1 3.6468 4.5529 2.3436 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164010630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:29 Heat of formation + Delta-G solvation = 71.337889 kcal Electronic energy + Delta-G solvation = -26975.316230 eV Core-core repulsion = 23307.490999 eV Total energy + Delta-G solvation = -3667.825231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.60708 -41.26344 -40.38776 -37.86449 -34.85483 -34.29756 -33.50697 -32.79626 -32.60840 -31.17005 -29.39455 -28.05207 -26.50318 -25.21072 -24.36499 -23.77636 -23.14771 -22.57861 -21.34175 -18.86331 -18.66572 -17.96392 -17.70239 -17.44140 -17.25486 -17.09715 -16.69903 -16.28705 -16.11830 -15.37853 -15.26725 -14.63677 -14.53179 -14.34339 -14.16334 -14.03264 -13.98883 -13.93543 -13.74688 -13.68315 -13.34152 -13.15584 -12.75202 -12.65904 -12.55513 -12.34790 -12.01263 -11.48154 -11.05331 -10.80911 -10.73083 -10.54622 -10.39833 -10.26749 -9.94676 -9.41557 -9.01176 -8.25381 -6.31371 -0.20843 0.20551 0.30834 0.37709 1.31079 1.31917 1.35619 1.42970 1.61092 2.32603 2.71264 2.75605 3.08073 3.14931 3.43043 3.57457 3.69432 3.78139 3.89325 3.92109 4.08391 4.13926 4.14863 4.18000 4.33331 4.44498 4.56650 4.61931 4.73771 4.74243 4.75222 4.85275 4.90679 4.92794 5.07434 5.11259 5.23343 5.24543 5.39803 5.42009 5.48259 5.57177 5.81587 5.94836 6.02487 6.29203 6.50515 6.80326 7.04683 7.05442 7.35265 8.85576 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008401 B = 0.005637 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3332.041310 B = 4965.673704 C = 6400.749617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.021 3.979 3 C -0.191 4.191 4 C -0.177 4.177 5 C 0.068 3.932 6 C -0.164 4.164 7 C 0.110 3.890 8 N -0.549 5.549 9 C 0.368 3.632 10 N -0.486 5.486 11 C 0.215 3.785 12 C -0.519 4.519 13 H 0.049 0.951 14 C 0.012 3.988 15 N -0.924 5.924 16 Si 0.953 3.047 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.275 1.275 20 C 0.111 3.889 21 C -0.130 4.130 22 C -0.072 4.072 23 C -0.172 4.172 24 C 0.091 3.909 25 N -0.506 5.506 26 C 0.110 3.890 27 O -0.193 6.193 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.162 0.838 32 H 0.177 0.823 33 H 0.194 0.806 34 H 0.030 0.970 35 H -0.021 1.021 36 H 0.264 0.736 37 H 0.040 0.960 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.158 0.842 41 H 0.186 0.814 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 -4.690 11.098 13.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.025 4.025 3 C -0.212 4.212 4 C -0.182 4.182 5 C 0.013 3.987 6 C -0.184 4.184 7 C -0.041 4.041 8 N -0.263 5.263 9 C 0.134 3.866 10 N -0.209 5.209 11 C 0.091 3.909 12 C -0.557 4.557 13 H 0.067 0.933 14 C -0.187 4.187 15 N -0.564 5.564 16 Si 0.779 3.221 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.200 1.200 20 C -0.016 4.016 21 C -0.132 4.132 22 C -0.099 4.099 23 C -0.191 4.191 24 C -0.066 4.066 25 N -0.215 5.215 26 C -0.047 4.047 27 O -0.094 6.094 28 H 0.112 0.888 29 H 0.130 0.870 30 H 0.117 0.883 31 H 0.180 0.820 32 H 0.194 0.806 33 H 0.211 0.789 34 H 0.048 0.952 35 H -0.003 1.003 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.107 0.893 39 H 0.139 0.861 40 H 0.175 0.825 41 H 0.203 0.797 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.416 -3.990 11.352 14.134 hybrid contribution 1.004 -0.982 -1.681 2.191 sum -6.411 -4.972 9.671 12.624 Atomic orbital electron populations 1.20628 0.80889 1.05709 1.05497 1.23212 0.95699 0.82364 1.01261 1.22265 0.89415 1.00403 1.09068 1.20696 0.95348 0.93966 1.08167 1.20029 0.84705 0.93131 1.00799 1.20983 0.87248 1.02682 1.07468 1.22592 0.98338 0.88817 0.94399 1.67890 1.32956 1.09136 1.16348 1.19319 0.86925 0.89931 0.90424 1.60254 1.52944 1.04011 1.03685 1.19508 0.90894 0.94852 0.85665 1.21300 1.00223 1.42747 0.91470 0.93312 1.25682 0.96108 0.95014 1.01903 1.70053 1.18761 1.42608 1.24951 0.85611 0.78563 0.78712 0.79256 1.19435 1.20367 1.20009 1.20828 0.97841 0.90958 0.91930 1.20672 0.96591 0.95804 1.00156 1.21682 0.98596 0.94759 0.94861 1.22375 1.00665 0.95258 1.00837 1.23244 0.89214 1.01132 0.93042 1.67720 1.29888 1.05046 1.18809 1.22713 0.95345 0.91139 0.95468 1.83869 1.14146 1.34985 1.76384 0.88779 0.87010 0.88278 0.82043 0.80604 0.78924 0.95237 1.00341 0.92690 0.94126 0.89329 0.86109 0.82483 0.79700 0.81785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.39 71.24 0.74 -0.42 16 2 C 0.02 0.60 7.24 24.74 0.18 0.78 16 3 C -0.19 -6.59 11.00 23.48 0.26 -6.33 16 4 C -0.18 -7.08 6.37 -20.13 -0.13 -7.21 16 5 C 0.07 2.39 7.49 23.12 0.17 2.57 16 6 C -0.16 -4.86 10.08 22.18 0.22 -4.63 16 7 C 0.11 3.59 11.08 84.25 0.93 4.52 16 8 N -0.55 -23.05 9.56 -193.60 -1.85 -24.90 16 9 C 0.37 16.06 4.69 133.33 0.63 16.69 16 10 N -0.49 -21.84 4.46 -709.90 -3.16 -25.01 16 11 C 0.22 11.59 4.50 85.56 0.38 11.98 16 12 C -0.52 -30.32 8.74 25.60 0.22 -30.10 16 13 H 0.05 2.90 7.79 -2.91 -0.02 2.88 16 14 C 0.01 0.68 5.45 84.65 0.46 1.14 16 15 N -0.92 -55.70 13.30 21.45 0.29 -55.42 16 16 Si 0.95 45.84 29.54 68.60 2.03 47.87 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 20 C 0.11 4.21 4.96 85.55 0.42 4.64 16 21 C -0.13 -4.64 4.93 -19.78 -0.10 -4.74 16 22 C -0.07 -2.55 8.01 22.47 0.18 -2.37 16 23 C -0.17 -5.04 10.11 22.36 0.23 -4.81 16 24 C 0.09 2.53 11.18 84.69 0.95 3.48 16 25 N -0.51 -16.28 10.36 -195.84 -2.03 -18.31 16 26 C 0.11 3.62 10.86 84.67 0.92 4.54 16 27 O -0.19 -6.07 10.57 -6.00 -0.06 -6.13 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.16 5.36 8.06 -2.91 -0.02 5.34 16 32 H 0.18 3.64 8.06 -2.91 -0.02 3.61 16 33 H 0.19 4.63 8.06 -2.91 -0.02 4.60 16 34 H 0.03 1.65 5.30 -2.39 -0.01 1.64 16 35 H -0.02 -1.28 7.58 -2.39 -0.02 -1.30 16 36 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 37 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 38 H 0.09 2.97 8.01 -2.39 -0.02 2.95 16 39 H 0.12 4.49 7.82 -2.91 -0.02 4.47 16 40 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 41 H 0.19 3.69 8.06 -2.91 -0.02 3.67 16 42 H 0.16 4.74 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -75.46 361.85 2.92 -72.54 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 1.04 Total: 19.63 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 6.67 Total: -10.28 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -6.76 Total: -123.63 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.06 Total: -6.13 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -75.46 2.92 -72.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.880 kcal (2) G-P(sol) polarization free energy of solvation -75.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds