Wall clock time and date at job start Tue Mar 31 2020 13:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86794 * 120.00722 * 2 1 4 4 H 1.48513 * 109.46814 * 275.40863 * 3 2 1 5 5 H 1.48501 * 109.47029 * 35.40345 * 3 2 1 6 6 H 1.48499 * 109.47468 * 155.41039 * 3 2 1 7 7 C 1.39874 * 119.99412 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00258 * 341.77994 * 7 2 1 9 9 C 1.41201 * 120.00090 * 161.77620 * 7 2 1 10 10 C 1.41320 * 120.57144 * 150.36132 * 9 7 2 11 11 C 1.36563 * 118.41010 * 179.97438 * 10 9 7 12 12 C 1.39703 * 119.49391 * 359.97438 * 11 10 9 13 13 N 1.38372 * 119.43448 * 179.97438 * 12 11 10 14 14 C 1.46507 * 119.99578 * 359.97438 * 13 12 11 15 15 C 1.50695 * 109.46846 * 179.97438 * 14 13 12 16 16 O 1.21291 * 120.00553 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99955 * 179.97438 * 15 14 13 18 18 C 1.46536 * 124.98133 * 179.97438 * 17 15 14 19 19 C 1.53742 * 105.19690 * 179.82181 * 18 17 15 20 20 C 1.51213 * 104.58189 * 0.33346 * 19 18 17 21 21 C 1.38184 * 130.96942 * 179.97438 * 20 19 18 22 22 C 1.38229 * 120.14473 * 179.64561 * 21 20 19 23 23 C 1.38297 * 119.83408 * 0.07313 * 22 21 20 24 24 C 1.37844 * 120.21784 * 359.95015 * 23 22 21 25 25 C 1.38557 * 108.55864 * 359.65678 * 20 19 18 26 26 N 1.32743 * 121.14061 * 0.27557 * 12 11 10 27 27 C 1.31490 * 121.72447 * 359.43205 * 26 12 11 28 28 H 0.97002 * 119.99423 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.79537 * 359.95725 * 10 9 7 30 30 H 1.08003 * 120.25672 * 180.02562 * 11 10 9 31 31 H 0.96993 * 120.00337 * 180.02562 * 13 12 11 32 32 H 1.08994 * 109.46764 * 59.99821 * 14 13 12 33 33 H 1.08998 * 109.46923 * 300.00186 * 14 13 12 34 34 H 1.09006 * 110.29347 * 298.97169 * 18 17 15 35 35 H 1.09002 * 110.29672 * 61.00599 * 18 17 15 36 36 H 1.08999 * 110.70647 * 241.40864 * 19 18 17 37 37 H 1.09001 * 110.11598 * 118.96550 * 19 18 17 38 38 H 1.07991 * 119.92972 * 359.67453 * 21 20 19 39 39 H 1.08002 * 120.08114 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.88951 * 179.97438 * 23 22 21 41 41 H 1.07994 * 119.85106 * 180.02562 * 24 23 22 42 42 H 1.08006 * 119.81257 * 180.30867 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 2.3764 2.1122 -1.3940 5 1 1.5025 2.6169 0.8111 6 1 3.5932 1.4096 0.5826 7 6 2.0082 -1.2114 0.0005 8 1 1.5088 -2.1231 0.2934 9 6 3.3671 -1.2424 -0.3819 10 6 4.2447 -2.2081 0.1608 11 6 5.5500 -2.1982 -0.2404 12 6 5.9776 -1.2441 -1.1669 13 7 7.3006 -1.2348 -1.5722 14 6 8.2397 -2.2198 -1.0297 15 6 9.6043 -1.9955 -1.6283 16 8 9.7758 -1.1006 -2.4290 17 7 10.6346 -2.7886 -1.2733 18 6 12.0023 -2.6690 -1.7857 19 6 12.7947 -3.7835 -1.0831 20 6 11.7787 -4.4767 -0.2036 21 6 11.9079 -5.5494 0.6579 22 6 10.8137 -6.0036 1.3699 23 6 9.5874 -5.3826 1.2172 24 6 9.4538 -4.3125 0.3587 25 6 10.5549 -3.8467 -0.3626 26 7 5.1379 -0.3424 -1.6609 27 6 3.8707 -0.3131 -1.3113 28 1 -0.4849 0.8401 -0.0004 29 1 3.8915 -2.9363 0.8759 30 1 6.2464 -2.9229 0.1550 31 1 7.6064 -0.5758 -2.2148 32 1 7.8956 -3.2241 -1.2765 33 1 8.2952 -2.1107 0.0534 34 1 12.0153 -2.8144 -2.8659 35 1 12.4176 -1.6939 -1.5311 36 1 13.5975 -3.3626 -0.4778 37 1 13.1973 -4.4787 -1.8198 38 1 12.8660 -6.0337 0.7754 39 1 10.9159 -6.8418 2.0432 40 1 8.7318 -5.7370 1.7728 41 1 8.4936 -3.8317 0.2443 42 1 3.2135 0.4312 -1.7364 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164585342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:44 Heat of formation + Delta-G solvation = 48.362739 kcal Electronic energy + Delta-G solvation = -25858.769058 eV Core-core repulsion = 22189.947549 eV Total energy + Delta-G solvation = -3668.821508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.53071 -39.29847 -38.68577 -36.61836 -35.17684 -33.59606 -33.05349 -31.36504 -30.06047 -29.95540 -29.42204 -27.53438 -24.51374 -23.59660 -23.28403 -22.44036 -21.62854 -20.67658 -20.14941 -17.97462 -17.44590 -16.77911 -16.77270 -16.53683 -16.03586 -15.82920 -15.15713 -15.05652 -14.69406 -14.36268 -14.05423 -13.60730 -13.56459 -13.32693 -13.12600 -13.05233 -12.96911 -12.54982 -12.50812 -12.42076 -12.19928 -11.87332 -11.81934 -11.13743 -11.07685 -10.86597 -10.62163 -10.51109 -10.30108 -10.03526 -9.51621 -9.16079 -8.92999 -8.60065 -8.19448 -8.14608 -6.96877 -6.91024 -4.33987 0.90352 1.01641 2.29699 2.31130 2.48762 2.64943 3.16447 3.23423 3.34748 3.44832 3.74518 3.99615 4.03605 4.07459 4.34862 4.57101 4.60975 4.64891 4.76975 4.99252 5.02906 5.13388 5.19416 5.22473 5.23950 5.42408 5.44139 5.47284 5.60508 5.73466 5.77403 6.03616 6.05022 6.09811 6.23103 6.23871 6.45660 6.57584 6.86412 6.99076 7.02850 7.24914 7.27569 7.61918 7.74694 7.96394 8.28892 8.35919 8.60291 8.76793 9.44359 10.11764 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021936 B = 0.002789 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.107520 B =10036.627757 C =11065.058954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.084 3.916 3 Si 0.904 3.096 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.249 1.249 7 C -0.443 4.443 8 H 0.090 0.910 9 C 0.013 3.987 10 C -0.136 4.136 11 C -0.187 4.187 12 C 0.277 3.723 13 N -0.735 5.735 14 C 0.125 3.875 15 C 0.523 3.477 16 O -0.508 6.508 17 N -0.554 5.554 18 C 0.107 3.893 19 C -0.085 4.085 20 C -0.137 4.137 21 C -0.075 4.075 22 C -0.143 4.143 23 C -0.082 4.082 24 C -0.159 4.159 25 C 0.144 3.856 26 N -0.504 5.504 27 C 0.008 3.992 28 H 0.284 0.716 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.403 0.597 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.642 -10.818 2.514 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.134 4.134 3 Si 0.730 3.270 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.172 1.172 7 C -0.473 4.473 8 H 0.108 0.892 9 C 0.007 3.993 10 C -0.163 4.163 11 C -0.211 4.211 12 C 0.046 3.954 13 N -0.378 5.378 14 C -0.004 4.004 15 C 0.313 3.687 16 O -0.381 6.381 17 N -0.278 5.278 18 C -0.015 4.015 19 C -0.123 4.123 20 C -0.140 4.140 21 C -0.093 4.093 22 C -0.162 4.162 23 C -0.101 4.101 24 C -0.179 4.179 25 C 0.049 3.951 26 N -0.218 5.218 27 C -0.151 4.151 28 H 0.095 0.905 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.241 0.759 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 23.726 -9.596 1.487 25.636 hybrid contribution 0.020 0.352 0.404 0.536 sum 23.745 -9.244 1.891 25.552 Atomic orbital electron populations 1.69717 1.07898 1.30090 1.35967 1.26066 0.94721 1.01394 0.91267 0.86441 0.81047 0.80306 0.79200 1.19263 1.21556 1.17242 1.19212 0.92734 0.96107 1.39198 0.89155 1.18507 0.94416 0.93495 0.92877 1.20979 0.92095 1.01964 1.01224 1.20721 0.97174 1.00950 1.02260 1.17592 0.84820 0.95322 0.97700 1.43341 1.05332 1.37328 1.51841 1.21183 0.85748 0.94890 0.98618 1.20781 0.85853 0.80613 0.81482 1.90731 1.83741 1.30672 1.33002 1.45931 1.10574 1.29977 1.41318 1.22060 0.79687 1.00108 0.99614 1.21126 0.97038 0.96272 0.97817 1.19993 0.94053 0.98623 1.01341 1.20404 0.99153 0.94814 0.94959 1.21069 0.92765 1.01208 1.01143 1.20970 0.97968 0.94378 0.96738 1.21181 0.98015 0.99618 0.99108 1.18392 0.95494 0.89183 0.92067 1.66510 1.04694 1.23279 1.27319 1.22294 0.90252 1.02669 0.99924 0.90513 0.86966 0.88048 0.75950 0.89322 0.89352 0.89742 0.89804 0.88969 0.89045 0.85681 0.85446 0.84928 0.84352 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.63 13.93 55.54 0.77 -20.85 16 2 C 0.08 2.19 5.41 -17.34 -0.09 2.10 16 3 Si 0.90 21.13 24.52 -169.99 -4.17 16.96 16 4 H -0.27 -6.13 6.71 56.52 0.38 -5.75 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.25 -6.09 6.86 56.52 0.39 -5.70 16 7 C -0.44 -11.83 9.58 -37.85 -0.36 -12.19 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 9 C 0.01 0.32 5.11 -106.65 -0.55 -0.22 16 10 C -0.14 -3.04 9.88 -39.02 -0.39 -3.43 16 11 C -0.19 -3.81 9.24 -39.64 -0.37 -4.17 16 12 C 0.28 6.07 7.64 -155.12 -1.19 4.89 16 13 N -0.74 -13.69 5.68 -61.53 -0.35 -14.04 16 14 C 0.12 1.78 3.17 -5.19 -0.02 1.76 16 15 C 0.52 7.44 7.87 -10.99 -0.09 7.36 16 16 O -0.51 -8.71 15.96 5.55 0.09 -8.62 16 17 N -0.55 -6.37 3.13 -112.89 -0.35 -6.73 16 18 C 0.11 0.93 7.06 -3.64 -0.03 0.91 16 19 C -0.09 -0.54 6.94 -27.25 -0.19 -0.73 16 20 C -0.14 -1.16 6.23 -104.27 -0.65 -1.81 16 21 C -0.07 -0.53 10.04 -39.60 -0.40 -0.93 16 22 C -0.14 -1.02 10.06 -39.56 -0.40 -1.42 16 23 C -0.08 -0.67 10.02 -39.70 -0.40 -1.07 16 24 C -0.16 -1.56 8.88 -39.21 -0.35 -1.90 16 25 C 0.14 1.50 6.59 -83.57 -0.55 0.95 16 26 N -0.50 -12.43 10.37 -11.78 -0.12 -12.56 16 27 C 0.01 0.19 8.37 -16.75 -0.14 0.05 16 28 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 29 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 30 H 0.10 1.65 6.64 -52.48 -0.35 1.30 16 31 H 0.40 7.85 7.55 -40.82 -0.31 7.55 16 32 H 0.09 1.16 6.67 -51.93 -0.35 0.81 16 33 H 0.09 1.16 6.67 -51.93 -0.35 0.81 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.14 1.36 4.21 -52.49 -0.22 1.13 16 42 H 0.13 3.37 4.73 -52.48 -0.25 3.12 16 LS Contribution 343.99 15.07 5.18 5.18 Total: -1.00 -31.56 343.99 -9.88 -41.44 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -4.79 Total: 9.10 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -6.14 Total: -9.88 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.05 Total: -54.18 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.17 Total: 16.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.56 -9.88 -41.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164585342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.799 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds