Wall clock time and date at job start Tue Mar 31 2020 13:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86794 * 120.00722 * 2 1 4 4 H 1.48513 * 109.46814 * 275.40863 * 3 2 1 5 5 H 1.48501 * 109.47029 * 35.40345 * 3 2 1 6 6 H 1.48499 * 109.47468 * 155.41039 * 3 2 1 7 7 C 1.39874 * 119.99412 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00258 * 341.77994 * 7 2 1 9 9 C 1.41201 * 120.00090 * 161.77620 * 7 2 1 10 10 C 1.41320 * 120.57144 * 150.36132 * 9 7 2 11 11 C 1.36563 * 118.41010 * 179.97438 * 10 9 7 12 12 C 1.39703 * 119.49391 * 359.97438 * 11 10 9 13 13 N 1.38372 * 119.43448 * 179.97438 * 12 11 10 14 14 C 1.46507 * 119.99578 * 359.97438 * 13 12 11 15 15 C 1.50695 * 109.46846 * 179.97438 * 14 13 12 16 16 O 1.21291 * 120.00553 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99955 * 179.97438 * 15 14 13 18 18 C 1.46536 * 124.98133 * 179.97438 * 17 15 14 19 19 C 1.53742 * 105.19690 * 179.82181 * 18 17 15 20 20 C 1.51213 * 104.58189 * 0.33346 * 19 18 17 21 21 C 1.38184 * 130.96942 * 179.97438 * 20 19 18 22 22 C 1.38229 * 120.14473 * 179.64561 * 21 20 19 23 23 C 1.38297 * 119.83408 * 0.07313 * 22 21 20 24 24 C 1.37844 * 120.21784 * 359.95015 * 23 22 21 25 25 C 1.38557 * 108.55864 * 359.65678 * 20 19 18 26 26 N 1.32743 * 121.14061 * 0.27557 * 12 11 10 27 27 C 1.31490 * 121.72447 * 359.43205 * 26 12 11 28 28 H 0.97002 * 119.99423 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.79537 * 359.95725 * 10 9 7 30 30 H 1.08003 * 120.25672 * 180.02562 * 11 10 9 31 31 H 0.96993 * 120.00337 * 180.02562 * 13 12 11 32 32 H 1.08994 * 109.46764 * 59.99821 * 14 13 12 33 33 H 1.08998 * 109.46923 * 300.00186 * 14 13 12 34 34 H 1.09006 * 110.29347 * 298.97169 * 18 17 15 35 35 H 1.09002 * 110.29672 * 61.00599 * 18 17 15 36 36 H 1.08999 * 110.70647 * 241.40864 * 19 18 17 37 37 H 1.09001 * 110.11598 * 118.96550 * 19 18 17 38 38 H 1.07991 * 119.92972 * 359.67453 * 21 20 19 39 39 H 1.08002 * 120.08114 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.88951 * 179.97438 * 23 22 21 41 41 H 1.07994 * 119.85106 * 180.02562 * 24 23 22 42 42 H 1.08006 * 119.81257 * 180.30867 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 2.3764 2.1122 -1.3940 5 1 1.5025 2.6169 0.8111 6 1 3.5932 1.4096 0.5826 7 6 2.0082 -1.2114 0.0005 8 1 1.5088 -2.1231 0.2934 9 6 3.3671 -1.2424 -0.3819 10 6 4.2447 -2.2081 0.1608 11 6 5.5500 -2.1982 -0.2404 12 6 5.9776 -1.2441 -1.1669 13 7 7.3006 -1.2348 -1.5722 14 6 8.2397 -2.2198 -1.0297 15 6 9.6043 -1.9955 -1.6283 16 8 9.7758 -1.1006 -2.4290 17 7 10.6346 -2.7886 -1.2733 18 6 12.0023 -2.6690 -1.7857 19 6 12.7947 -3.7835 -1.0831 20 6 11.7787 -4.4767 -0.2036 21 6 11.9079 -5.5494 0.6579 22 6 10.8137 -6.0036 1.3699 23 6 9.5874 -5.3826 1.2172 24 6 9.4538 -4.3125 0.3587 25 6 10.5549 -3.8467 -0.3626 26 7 5.1379 -0.3424 -1.6609 27 6 3.8707 -0.3131 -1.3113 28 1 -0.4849 0.8401 -0.0004 29 1 3.8915 -2.9363 0.8759 30 1 6.2464 -2.9229 0.1550 31 1 7.6064 -0.5758 -2.2148 32 1 7.8956 -3.2241 -1.2765 33 1 8.2952 -2.1107 0.0534 34 1 12.0153 -2.8144 -2.8659 35 1 12.4176 -1.6939 -1.5311 36 1 13.5975 -3.3626 -0.4778 37 1 13.1973 -4.4787 -1.8198 38 1 12.8660 -6.0337 0.7754 39 1 10.9159 -6.8418 2.0432 40 1 8.7318 -5.7370 1.7728 41 1 8.4936 -3.8317 0.2443 42 1 3.2135 0.4312 -1.7364 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164585342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:43 Heat of formation + Delta-G solvation = 28.936039 kcal Electronic energy + Delta-G solvation = -25859.611462 eV Core-core repulsion = 22189.947549 eV Total energy + Delta-G solvation = -3669.663913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.33929 -40.72295 -39.97278 -37.42131 -36.68948 -35.28901 -33.99932 -33.16875 -31.58305 -30.72424 -30.18162 -28.83933 -26.17536 -24.63896 -24.12775 -23.91090 -22.64359 -22.09048 -21.05103 -19.56172 -18.92030 -18.06543 -17.67797 -17.63129 -17.28940 -16.91997 -16.41693 -16.08384 -15.84160 -15.53640 -15.38735 -15.03327 -14.85272 -14.74957 -14.33100 -14.19363 -13.99752 -13.72128 -13.65400 -13.59652 -13.14541 -12.98700 -12.91835 -12.77243 -12.43627 -12.34352 -11.90654 -11.74449 -11.43692 -11.36187 -11.31354 -10.71719 -10.40175 -10.04291 -9.73686 -8.86624 -8.86308 -8.71143 -6.31990 0.19284 0.42923 0.65503 0.80612 1.27457 1.33214 1.37489 1.41514 1.45342 2.10098 2.42049 2.65254 2.84608 3.04259 3.47887 3.52111 3.65178 3.90456 4.04647 4.05710 4.12363 4.18167 4.20528 4.31289 4.40342 4.42435 4.52191 4.58711 4.63900 4.67036 4.92854 4.94041 5.02739 5.07456 5.11093 5.16513 5.40706 5.44147 5.47627 5.52510 5.64782 5.90661 5.97341 6.13372 6.21530 6.40204 6.51941 6.63044 6.75980 6.87389 7.62324 8.22000 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021936 B = 0.002789 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.107520 B =10036.627757 C =11065.058954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.053 3.947 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.470 4.470 8 H 0.068 0.932 9 C -0.011 4.011 10 C -0.127 4.127 11 C -0.180 4.180 12 C 0.291 3.709 13 N -0.734 5.734 14 C 0.122 3.878 15 C 0.521 3.479 16 O -0.549 6.549 17 N -0.550 5.550 18 C 0.097 3.903 19 C -0.077 4.077 20 C -0.138 4.138 21 C -0.077 4.077 22 C -0.138 4.138 23 C -0.092 4.092 24 C -0.171 4.171 25 C 0.109 3.891 26 N -0.535 5.535 27 C -0.009 4.009 28 H 0.292 0.708 29 H 0.135 0.865 30 H 0.151 0.849 31 H 0.399 0.601 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.135 0.865 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.154 -12.928 3.750 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.161 4.161 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.501 4.501 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.153 4.153 11 C -0.204 4.204 12 C 0.057 3.943 13 N -0.375 5.375 14 C -0.005 4.005 15 C 0.311 3.689 16 O -0.427 6.427 17 N -0.274 5.274 18 C -0.024 4.024 19 C -0.113 4.113 20 C -0.141 4.141 21 C -0.095 4.095 22 C -0.156 4.156 23 C -0.110 4.110 24 C -0.191 4.191 25 C 0.015 3.985 26 N -0.251 5.251 27 C -0.166 4.166 28 H 0.103 0.897 29 H 0.153 0.847 30 H 0.169 0.831 31 H 0.235 0.765 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.171 0.829 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.152 0.848 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 27.265 -11.749 2.748 29.815 hybrid contribution -0.710 0.757 0.044 1.039 sum 26.554 -10.992 2.792 28.875 Atomic orbital electron populations 1.69734 1.08662 1.31101 1.38151 1.26545 0.95195 1.03294 0.91053 0.85681 0.79170 0.78167 0.79139 1.19203 1.19819 1.19096 1.19187 0.93778 0.95707 1.41420 0.91425 1.18619 0.94433 0.94918 0.93639 1.21351 0.92528 1.00861 1.00585 1.21118 0.97176 1.01048 1.01046 1.18078 0.85585 0.94194 0.96467 1.43548 1.04727 1.37887 1.51314 1.21466 0.85275 0.94397 0.99393 1.20671 0.86391 0.80627 0.81204 1.90713 1.84354 1.32596 1.35030 1.45904 1.10777 1.29560 1.41112 1.22309 0.78772 1.01310 1.00018 1.21179 0.96592 0.95570 0.97997 1.20322 0.93778 0.98614 1.01354 1.20774 1.00462 0.94216 0.94076 1.21462 0.92253 1.01249 1.00677 1.21246 0.99199 0.94024 0.96576 1.21285 0.97768 1.00357 0.99737 1.18656 0.96851 0.89842 0.93172 1.66526 1.04797 1.25058 1.28691 1.22190 0.90756 1.03077 1.00531 0.89723 0.84694 0.83147 0.76535 0.87404 0.87495 0.89731 0.89814 0.86982 0.87055 0.82945 0.82974 0.83368 0.84758 0.85937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.68 13.93 21.82 0.30 -46.38 16 2 C 0.05 2.88 5.41 85.23 0.46 3.34 16 3 Si 0.95 44.74 24.52 68.60 1.68 46.43 16 4 H -0.27 -12.28 6.71 99.48 0.67 -11.62 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.27 -13.12 6.86 99.48 0.68 -12.44 16 7 C -0.47 -25.96 9.58 23.39 0.22 -25.73 16 8 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 9 C -0.01 -0.54 5.11 -21.18 -0.11 -0.65 16 10 C -0.13 -5.47 9.88 22.64 0.22 -5.24 16 11 C -0.18 -6.82 9.24 22.23 0.21 -6.61 16 12 C 0.29 12.31 7.64 133.31 1.02 13.33 16 13 N -0.73 -26.23 5.68 -348.59 -1.98 -28.21 16 14 C 0.12 3.22 3.17 85.63 0.27 3.49 16 15 C 0.52 14.26 7.87 87.65 0.69 14.95 16 16 O -0.55 -18.81 15.96 -3.06 -0.05 -18.86 16 17 N -0.55 -11.78 3.13 -629.47 -1.97 -13.75 16 18 C 0.10 1.53 7.06 86.62 0.61 2.14 16 19 C -0.08 -0.73 6.94 30.26 0.21 -0.52 16 20 C -0.14 -1.88 6.23 -19.64 -0.12 -2.01 16 21 C -0.08 -0.78 10.04 22.25 0.22 -0.56 16 22 C -0.14 -1.40 10.06 22.28 0.22 -1.18 16 23 C -0.09 -1.19 10.02 22.19 0.22 -0.97 16 24 C -0.17 -2.88 8.88 22.51 0.20 -2.68 16 25 C 0.11 2.00 6.59 38.28 0.25 2.25 16 26 N -0.53 -26.35 10.37 -191.20 -1.98 -28.34 16 27 C -0.01 -0.48 8.37 85.36 0.71 0.24 16 28 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 29 H 0.14 5.16 8.06 -2.91 -0.02 5.13 16 30 H 0.15 4.18 6.64 -2.91 -0.02 4.16 16 31 H 0.40 15.33 7.55 -92.71 -0.70 14.63 16 32 H 0.11 2.49 6.67 -2.39 -0.02 2.47 16 33 H 0.11 2.48 6.67 -2.39 -0.02 2.46 16 34 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.15 0.69 8.06 -2.91 -0.02 0.66 16 39 H 0.15 0.77 8.06 -2.91 -0.02 0.75 16 40 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 41 H 0.13 2.21 4.21 -2.91 -0.01 2.20 16 42 H 0.12 6.44 4.73 -2.91 -0.01 6.42 16 Total: -1.00 -70.80 343.99 1.84 -68.95 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.32 Total: 26.55 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 5.52 Total: -6.39 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -5.63 Total: -116.68 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.05 Total: -18.86 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.68 Total: 46.43 kcal Total: -70.80 1.84 -68.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164585342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.890 kcal (2) G-P(sol) polarization free energy of solvation -70.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds