Wall clock time and date at job start Tue Mar 31 2020 13:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86795 * 120.00049 * 2 1 4 4 H 1.48497 * 109.47230 * 269.99969 * 3 2 1 5 5 H 1.48502 * 109.47044 * 29.99734 * 3 2 1 6 6 H 1.48501 * 109.47382 * 150.00357 * 3 2 1 7 7 C 1.39949 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00286 * 163.58435 * 7 2 1 9 9 C 1.41023 * 119.99990 * 343.59018 * 7 2 1 10 10 C 1.41003 * 120.70445 * 334.91284 * 9 7 2 11 11 C 1.38013 * 118.27821 * 180.24832 * 10 9 7 12 12 C 1.38672 * 119.62900 * 359.74923 * 11 10 9 13 13 N 1.31976 * 121.44808 * 359.97438 * 12 11 10 14 14 C 1.32268 * 121.86203 * 0.02562 * 13 12 11 15 15 N 1.38093 * 119.90142 * 179.97438 * 14 13 12 16 16 C 1.46506 * 120.00061 * 359.97438 * 15 14 13 17 17 C 1.50698 * 109.47087 * 180.02562 * 16 15 14 18 18 O 1.21291 * 119.99964 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00145 * 179.97438 * 17 16 15 20 20 C 1.46540 * 124.98020 * 179.97438 * 19 17 16 21 21 C 1.53743 * 105.19375 * 179.81888 * 20 19 17 22 22 C 1.51214 * 104.58668 * 0.33307 * 21 20 19 23 23 C 1.38183 * 130.97718 * 179.97438 * 22 21 20 24 24 C 1.38224 * 120.15431 * 179.64802 * 23 22 21 25 25 C 1.38304 * 119.82345 * 0.07040 * 24 23 22 26 26 C 1.37834 * 120.22399 * 359.95233 * 25 24 23 27 27 C 1.38562 * 108.55652 * 359.65679 * 22 21 20 28 28 H 0.96997 * 120.00364 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.85914 * 359.97438 * 10 9 7 30 30 H 1.08000 * 120.18109 * 179.72492 * 11 10 9 31 31 H 1.07997 * 119.27662 * 180.02562 * 12 11 10 32 32 H 0.97003 * 120.00255 * 180.02562 * 15 14 13 33 33 H 1.08999 * 109.47195 * 60.00170 * 16 15 14 34 34 H 1.09004 * 109.46899 * 299.99951 * 16 15 14 35 35 H 1.08995 * 110.29892 * 298.96306 * 20 19 17 36 36 H 1.08997 * 110.29677 * 61.01370 * 20 19 17 37 37 H 1.09004 * 110.70663 * 241.41308 * 21 20 19 38 38 H 1.08998 * 110.11822 * 118.96767 * 21 20 19 39 39 H 1.08002 * 119.92341 * 359.67614 * 23 22 21 40 40 H 1.07996 * 120.09105 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.88535 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.85794 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0464 -1.4000 5 1 1.4401 2.6526 0.7000 6 1 3.5403 1.4401 0.7000 7 6 2.0084 -1.2120 0.0005 8 1 3.0554 -1.2312 -0.2638 9 6 1.3464 -2.4083 0.3461 10 6 0.2027 -2.3859 1.1704 11 6 -0.4028 -3.5866 1.4813 12 6 0.1193 -4.7683 0.9774 13 7 1.1874 -4.7740 0.2023 14 6 1.8131 -3.6577 -0.1324 15 7 2.9279 -3.7107 -0.9457 16 6 3.4161 -5.0021 -1.4361 17 6 4.6349 -4.7848 -2.2954 18 8 5.0541 -3.6618 -2.4804 19 7 5.2591 -5.8383 -2.8583 20 6 6.4480 -5.7532 -3.7107 21 6 6.7740 -7.2060 -4.0938 22 6 5.7038 -8.0288 -3.4126 23 6 5.4828 -9.3928 -3.3957 24 6 4.4216 -9.9155 -2.6808 25 6 3.5792 -9.0693 -1.9827 26 6 3.7954 -7.7081 -1.9971 27 6 4.8664 -7.1728 -2.7153 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1869 -1.4538 1.5523 30 1 -1.2779 -3.6056 2.1139 31 1 -0.3593 -5.7046 1.2240 32 1 3.3881 -2.8931 -1.1917 33 1 2.6369 -5.4851 -2.0256 34 1 3.6774 -5.6370 -0.5894 35 1 6.2332 -5.1629 -4.6014 36 1 7.2787 -5.3143 -3.1581 37 1 7.7612 -7.4888 -3.7281 38 1 6.7183 -7.3300 -5.1752 39 1 6.1412 -10.0520 -3.9419 40 1 4.2501 -10.9816 -2.6679 41 1 2.7495 -9.4766 -1.4241 42 1 3.1342 -7.0529 -1.4495 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164585447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:47 Heat of formation + Delta-G solvation = 44.058616 kcal Electronic energy + Delta-G solvation = -26252.233617 eV Core-core repulsion = 22583.225468 eV Total energy + Delta-G solvation = -3669.008149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.28485 -39.00499 -38.31144 -36.37082 -34.46177 -33.95332 -32.98593 -30.40830 -29.85716 -29.70305 -29.09661 -26.63934 -25.26555 -23.37014 -23.17865 -21.64629 -21.36795 -20.45172 -19.88464 -17.64937 -17.23418 -16.56889 -16.52776 -16.07277 -15.98155 -15.30691 -14.99526 -14.84614 -14.50294 -14.05394 -13.83193 -13.60933 -13.27426 -13.07026 -12.84758 -12.83149 -12.70469 -12.29293 -12.22130 -11.93595 -11.84745 -11.65911 -11.41645 -11.31273 -10.92694 -10.88877 -10.52439 -10.41507 -10.02129 -9.76633 -9.29676 -9.09898 -8.93609 -8.13568 -7.93176 -7.92946 -6.81533 -6.54906 -4.23361 1.11254 1.22082 2.57532 2.58690 2.75241 3.08757 3.09326 3.14560 3.24688 3.65076 3.95729 4.07923 4.26146 4.41440 4.61727 4.70673 4.81950 4.82530 4.95146 5.19909 5.27594 5.36181 5.42623 5.59150 5.61101 5.63665 5.70328 5.83024 5.84351 5.97580 6.00728 6.26256 6.29957 6.43229 6.44779 6.75183 6.78954 6.83485 7.13005 7.16082 7.27302 7.62867 7.80269 7.91074 8.00996 8.24711 8.50496 8.65177 8.79038 8.97399 9.72704 10.20830 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016022 B = 0.003451 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.229824 B = 8110.778879 C = 9760.661488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.077 0.923 9 C 0.038 3.962 10 C -0.125 4.125 11 C -0.188 4.188 12 C 0.000 4.000 13 N -0.534 5.534 14 C 0.300 3.700 15 N -0.721 5.721 16 C 0.129 3.871 17 C 0.519 3.481 18 O -0.509 6.509 19 N -0.555 5.555 20 C 0.106 3.894 21 C -0.084 4.084 22 C -0.140 4.140 23 C -0.077 4.077 24 C -0.146 4.146 25 C -0.083 4.083 26 C -0.156 4.156 27 C 0.147 3.853 28 H 0.280 0.720 29 H 0.126 0.874 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.414 0.586 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.849 -14.974 -6.483 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.095 0.905 9 C 0.031 3.969 10 C -0.152 4.152 11 C -0.210 4.210 12 C -0.154 4.154 13 N -0.252 5.252 14 C 0.063 3.937 15 N -0.365 5.365 16 C 0.000 4.000 17 C 0.309 3.691 18 O -0.383 6.383 19 N -0.280 5.280 20 C -0.015 4.015 21 C -0.122 4.122 22 C -0.143 4.143 23 C -0.096 4.096 24 C -0.165 4.165 25 C -0.101 4.101 26 C -0.177 4.177 27 C 0.051 3.949 28 H 0.091 0.909 29 H 0.143 0.857 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.254 0.746 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.152 -14.941 -6.877 19.329 hybrid contribution 0.081 1.851 0.159 1.859 sum 10.233 -13.090 -6.718 17.922 Atomic orbital electron populations 1.69808 1.07477 1.29129 1.35890 1.25815 0.94718 1.01126 0.92441 0.86326 0.80605 0.80683 0.79252 1.19511 1.20155 1.18474 1.19207 0.97255 0.90959 1.41149 0.90513 1.17880 0.94454 0.91146 0.93446 1.21348 0.98011 0.96827 0.99002 1.21413 1.01266 0.94342 1.03999 1.21319 0.95719 0.96163 1.02194 1.66509 1.11125 1.29684 1.17836 1.18373 0.90395 0.89999 0.94900 1.43521 1.31091 1.06044 1.55877 1.21051 0.92074 0.90085 0.96771 1.21117 0.85021 0.83381 0.79571 1.90721 1.65553 1.22312 1.59693 1.45979 1.28943 1.04667 1.48363 1.22032 0.87189 0.97506 0.94791 1.21109 0.98087 0.91791 1.01165 1.19990 0.98528 0.93610 1.02204 1.20356 0.97736 0.92630 0.98873 1.21035 0.96130 0.99844 0.99509 1.20952 0.98920 0.92310 0.97927 1.21351 0.97911 0.96568 1.01858 1.18412 0.95745 0.83415 0.97312 0.90921 0.85658 0.88680 0.86390 0.74579 0.89462 0.89507 0.89871 0.89935 0.89136 0.89212 0.85885 0.85665 0.85107 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.65 10.95 55.55 0.61 -20.04 16 2 C 0.08 1.92 5.19 -17.32 -0.09 1.83 16 3 Si 0.91 19.05 29.59 -169.99 -5.03 14.02 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.45 -12.03 8.51 -37.89 -0.32 -12.35 16 8 H 0.08 1.98 6.70 -52.49 -0.35 1.62 16 9 C 0.04 1.01 5.59 -106.47 -0.60 0.41 16 10 C -0.13 -3.26 8.79 -38.62 -0.34 -3.60 16 11 C -0.19 -4.39 10.08 -39.50 -0.40 -4.79 16 12 C 0.00 -0.01 11.17 -17.33 -0.19 -0.20 16 13 N -0.53 -12.67 9.54 -11.87 -0.11 -12.78 16 14 C 0.30 7.49 7.52 -155.02 -1.17 6.32 16 15 N -0.72 -16.06 5.58 -61.15 -0.34 -16.40 16 16 C 0.13 2.33 3.98 -5.19 -0.02 2.31 16 17 C 0.52 8.96 7.87 -10.99 -0.09 8.88 16 18 O -0.51 -10.21 15.96 5.55 0.09 -10.13 16 19 N -0.56 -7.81 3.13 -112.90 -0.35 -8.17 16 20 C 0.11 1.16 7.06 -3.63 -0.03 1.13 16 21 C -0.08 -0.70 6.93 -27.24 -0.19 -0.88 16 22 C -0.14 -1.47 6.23 -104.27 -0.65 -2.12 16 23 C -0.08 -0.69 10.03 -39.61 -0.40 -1.09 16 24 C -0.15 -1.31 10.06 -39.56 -0.40 -1.70 16 25 C -0.08 -0.86 10.02 -39.71 -0.40 -1.25 16 26 C -0.16 -1.96 8.88 -39.21 -0.35 -2.31 16 27 C 0.15 1.88 6.59 -83.57 -0.55 1.33 16 28 H 0.28 6.62 8.30 -40.82 -0.34 6.29 16 29 H 0.13 3.34 6.26 -52.49 -0.33 3.01 16 30 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.41 9.57 5.64 -40.82 -0.23 9.34 16 33 H 0.09 1.55 6.91 -51.93 -0.36 1.20 16 34 H 0.09 1.52 6.91 -51.93 -0.36 1.16 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 42 H 0.15 2.01 4.21 -52.48 -0.22 1.78 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -30.56 348.37 -10.85 -41.41 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -4.79 Total: 14.92 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -6.17 Total: -8.09 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.20 Total: -57.39 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.56 -10.85 -41.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164585447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.469 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds