Wall clock time and date at job start Tue Mar 31 2020 13:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86796 * 119.99949 * 2 1 4 4 H 1.48508 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47186 * 299.99382 * 3 2 1 6 6 H 1.48506 * 109.47141 * 59.99894 * 3 2 1 7 7 C 1.39937 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99872 * 162.97001 * 7 2 1 9 9 C 1.41428 * 119.99723 * 342.97579 * 7 2 1 10 10 C 1.40798 * 120.62220 * 155.86815 * 9 7 2 11 11 N 1.31466 * 120.56220 * 179.97438 * 10 9 7 12 12 C 1.32014 * 122.06028 * 0.02562 * 11 10 9 13 13 C 1.39287 * 121.20766 * 359.97438 * 12 11 10 14 14 N 1.39729 * 120.36414 * 180.02562 * 13 12 11 15 15 C 1.46501 * 119.99456 * 359.97438 * 14 13 12 16 16 C 1.50707 * 109.46738 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00105 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99719 * 179.97438 * 16 15 14 19 19 C 1.46534 * 124.97946 * 179.97438 * 18 16 15 20 20 C 1.53738 * 105.20048 * 179.97438 * 19 18 16 21 21 C 1.51207 * 104.58186 * 0.02562 * 20 19 18 22 22 C 1.38187 * 130.97579 * 179.97438 * 21 20 19 23 23 C 1.38230 * 120.14743 * 179.15571 * 22 21 20 24 24 C 1.38293 * 119.83041 * 0.82819 * 23 22 21 25 25 C 1.37841 * 120.22008 * 359.47548 * 24 23 22 26 26 C 1.38561 * 108.55958 * 359.75162 * 21 20 19 27 27 C 1.38700 * 119.27773 * 359.97438 * 13 12 11 28 28 H 0.96997 * 119.99980 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.71556 * 359.95410 * 10 9 7 30 30 H 1.07997 * 119.39587 * 179.97438 * 12 11 10 31 31 H 0.96999 * 120.00073 * 179.97438 * 14 13 12 32 32 H 1.08991 * 109.47284 * 299.99837 * 15 14 13 33 33 H 1.09006 * 109.47204 * 60.00241 * 15 14 13 34 34 H 1.09006 * 110.30089 * 298.91531 * 19 18 16 35 35 H 1.09005 * 110.29749 * 60.95370 * 19 18 16 36 36 H 1.09008 * 110.41321 * 118.77900 * 20 19 18 37 37 H 1.08998 * 110.41343 * 241.22550 * 20 19 18 38 38 H 1.08001 * 119.92343 * 0.04160 * 22 21 20 39 39 H 1.08004 * 120.08637 * 180.33129 * 23 22 21 40 40 H 1.08003 * 119.89231 * 179.50414 * 24 23 22 41 41 H 1.08005 * 119.85826 * 180.02562 * 25 24 23 42 42 H 1.07999 * 120.92796 * 180.27059 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3463 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0525 -1.2325 -0.2734 9 6 1.3473 -2.4097 0.3597 10 6 1.8232 -3.6549 -0.0934 11 7 1.2084 -4.7676 0.2416 12 6 0.1323 -4.7707 1.0062 13 6 -0.4066 -3.5845 1.4986 14 7 -1.5461 -3.6084 2.3070 15 6 -2.1809 -4.8859 2.6403 16 6 -3.3807 -4.6367 3.5177 17 8 -3.6766 -3.5036 3.8329 18 7 -4.1254 -5.6731 3.9510 19 6 -5.3100 -5.5569 4.8057 20 6 -5.7976 -6.9995 5.0171 21 6 -4.8183 -7.8501 4.2401 22 6 -4.7488 -9.2187 4.0625 23 6 -3.7509 -9.7674 3.2789 24 6 -2.8109 -8.9442 2.6863 25 6 -2.8725 -7.5790 2.8657 26 6 -3.8841 -7.0164 3.6467 27 6 0.2008 -2.3793 1.1787 28 1 -0.4850 0.8400 -0.0004 29 1 2.7007 -3.6962 -0.7218 30 1 -0.3389 -5.7103 1.2544 31 1 -1.9167 -2.7791 2.6473 32 1 -2.4975 -5.3843 1.7242 33 1 -1.4686 -5.5182 3.1705 34 1 -5.0443 -5.1037 5.7608 35 1 -6.0788 -4.9655 4.3082 36 1 -5.7699 -7.2590 6.0755 37 1 -6.8057 -7.1219 4.6210 38 1 -5.4843 -9.8601 4.5253 39 1 -3.7007 -10.8368 3.1364 40 1 -2.0260 -9.3725 2.0804 41 1 -2.1356 -6.9415 2.3998 42 1 -0.1920 -1.4441 1.5495 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164593338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:55 Heat of formation + Delta-G solvation = 38.486329 kcal Electronic energy + Delta-G solvation = -25914.951071 eV Core-core repulsion = 22245.701290 eV Total energy + Delta-G solvation = -3669.249781 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.43876 -39.14368 -38.29950 -36.52495 -34.99007 -33.90658 -33.16465 -30.38353 -29.97382 -29.71595 -29.07284 -26.36686 -25.52470 -23.49464 -23.24513 -21.91626 -21.60381 -20.51147 -20.02065 -17.69144 -17.24073 -16.70370 -16.68132 -16.09176 -15.80240 -15.43497 -15.03398 -14.97484 -14.82137 -14.52601 -13.96661 -13.73529 -13.35475 -13.20192 -13.06760 -12.95939 -12.77648 -12.43786 -12.28161 -12.06425 -11.78892 -11.59851 -11.47364 -11.19264 -11.06015 -10.96040 -10.54147 -10.52364 -10.22226 -9.91709 -9.63729 -9.32245 -9.07061 -8.07946 -8.06255 -7.76329 -6.84384 -6.45698 -4.46486 0.98653 1.09807 2.39656 2.41857 2.73229 3.05646 3.10369 3.11404 3.24152 3.52966 3.89334 3.90326 4.14737 4.20985 4.44105 4.65541 4.69262 4.71679 4.84766 5.07736 5.12485 5.22055 5.31256 5.33800 5.37791 5.49874 5.51553 5.68946 5.77174 5.84739 6.06189 6.14074 6.17640 6.31479 6.51352 6.59088 6.66103 6.89530 7.07201 7.12697 7.15426 7.53048 7.68077 7.73072 7.96905 8.17210 8.42311 8.61011 8.76396 8.85062 9.72924 10.11662 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.002819 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.360747 B = 9928.618573 C =11162.361374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.449 4.449 8 H 0.083 0.917 9 C 0.096 3.904 10 C -0.048 4.048 11 N -0.444 5.444 12 C -0.102 4.102 13 C 0.175 3.825 14 N -0.746 5.746 15 C 0.117 3.883 16 C 0.522 3.478 17 O -0.509 6.509 18 N -0.554 5.554 19 C 0.107 3.893 20 C -0.085 4.085 21 C -0.138 4.138 22 C -0.075 4.075 23 C -0.144 4.144 24 C -0.082 4.082 25 C -0.158 4.158 26 C 0.145 3.855 27 C -0.204 4.204 28 H 0.281 0.719 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.402 0.598 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.053 -14.313 9.351 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.091 3.909 10 C -0.213 4.213 11 N -0.151 5.151 12 C -0.261 4.261 13 C 0.074 3.926 14 N -0.384 5.384 15 C -0.012 4.012 16 C 0.312 3.688 17 O -0.383 6.383 18 N -0.278 5.278 19 C -0.015 4.015 20 C -0.122 4.122 21 C -0.141 4.141 22 C -0.094 4.094 23 C -0.163 4.163 24 C -0.100 4.100 25 C -0.178 4.178 26 C 0.049 3.951 27 C -0.235 4.235 28 H 0.092 0.908 29 H 0.142 0.858 30 H 0.130 0.870 31 H 0.240 0.760 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.135 -14.319 9.233 20.917 hybrid contribution -0.319 1.927 0.428 2.000 sum -12.453 -12.391 9.661 20.049 Atomic orbital electron populations 1.69837 1.07673 1.29298 1.34139 1.25975 0.94757 1.01527 0.92147 0.86235 0.81039 0.80745 0.78586 1.18224 1.19926 1.19706 1.19588 0.97959 0.90834 1.39558 0.89845 1.18275 0.90941 0.93482 0.88236 1.22347 1.03590 0.88082 1.07328 1.66808 1.06684 1.31949 1.09623 1.21148 1.00445 0.94123 1.10363 1.18633 0.86625 0.95854 0.91461 1.44143 1.30517 1.05743 1.57984 1.21253 0.91842 0.90211 0.97848 1.20876 0.83998 0.83696 0.80208 1.90724 1.69954 1.21307 1.56283 1.45947 1.28574 1.04559 1.48760 1.22052 0.86647 0.97681 0.95121 1.21118 0.98643 0.91545 1.00899 1.19990 0.98153 0.93641 1.02335 1.20392 0.98438 0.92471 0.98102 1.21059 0.95916 1.00006 0.99287 1.20972 0.98451 0.92354 0.98241 1.21220 0.99059 0.96235 1.01323 1.18399 0.96309 0.83244 0.97111 1.21077 1.01649 0.95028 1.05732 0.90794 0.85814 0.87045 0.76050 0.89283 0.89324 0.89827 0.89817 0.89066 0.89051 0.85740 0.85496 0.84926 0.84209 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.21 10.93 55.55 0.61 -19.60 16 2 C 0.07 1.86 5.18 -17.34 -0.09 1.77 16 3 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.45 -11.76 9.08 -37.73 -0.34 -12.10 16 8 H 0.08 2.07 7.90 -52.49 -0.41 1.66 16 9 C 0.10 2.57 5.59 -106.70 -0.60 1.98 16 10 C -0.05 -1.24 10.97 -16.74 -0.18 -1.43 16 11 N -0.44 -11.06 10.33 -12.37 -0.13 -11.19 16 12 C -0.10 -2.36 10.49 -17.08 -0.18 -2.54 16 13 C 0.17 4.11 6.67 -83.70 -0.56 3.55 16 14 N -0.75 -14.95 5.71 -59.74 -0.34 -15.29 16 15 C 0.12 1.86 3.23 -5.19 -0.02 1.84 16 16 C 0.52 8.14 7.87 -10.98 -0.09 8.05 16 17 O -0.51 -9.40 15.96 5.55 0.09 -9.31 16 18 N -0.55 -7.03 3.13 -112.89 -0.35 -7.39 16 19 C 0.11 1.04 7.06 -3.64 -0.03 1.02 16 20 C -0.08 -0.62 6.93 -27.25 -0.19 -0.81 16 21 C -0.14 -1.30 6.23 -104.27 -0.65 -1.95 16 22 C -0.08 -0.60 10.04 -39.60 -0.40 -1.00 16 23 C -0.14 -1.15 10.06 -39.56 -0.40 -1.55 16 24 C -0.08 -0.76 10.02 -39.71 -0.40 -1.15 16 25 C -0.16 -1.75 8.88 -39.21 -0.35 -2.10 16 26 C 0.14 1.67 6.59 -83.57 -0.55 1.12 16 27 C -0.20 -5.35 8.66 -38.39 -0.33 -5.68 16 28 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 29 H 0.12 2.94 8.06 -52.49 -0.42 2.52 16 30 H 0.11 2.21 6.73 -52.49 -0.35 1.86 16 31 H 0.40 8.35 7.46 -40.82 -0.30 8.04 16 32 H 0.09 1.34 6.70 -51.93 -0.35 1.00 16 33 H 0.09 1.31 6.75 -51.93 -0.35 0.96 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.14 1.60 4.21 -52.48 -0.22 1.38 16 42 H 0.13 3.40 6.23 -52.49 -0.33 3.07 16 LS Contribution 349.58 15.07 5.27 5.27 Total: -1.00 -31.11 349.58 -10.06 -41.18 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -4.84 Total: 13.87 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -5.34 Total: -10.99 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.21 Total: -53.47 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.11 -10.06 -41.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164593338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.664 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds