Wall clock time and date at job start Tue Mar 31 2020 13:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86796 * 119.99949 * 2 1 4 4 H 1.48508 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47186 * 299.99382 * 3 2 1 6 6 H 1.48506 * 109.47141 * 59.99894 * 3 2 1 7 7 C 1.39937 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99872 * 162.97001 * 7 2 1 9 9 C 1.41428 * 119.99723 * 342.97579 * 7 2 1 10 10 C 1.40798 * 120.62220 * 155.86815 * 9 7 2 11 11 N 1.31466 * 120.56220 * 179.97438 * 10 9 7 12 12 C 1.32014 * 122.06028 * 0.02562 * 11 10 9 13 13 C 1.39287 * 121.20766 * 359.97438 * 12 11 10 14 14 N 1.39729 * 120.36414 * 180.02562 * 13 12 11 15 15 C 1.46501 * 119.99456 * 359.97438 * 14 13 12 16 16 C 1.50707 * 109.46738 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00105 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99719 * 179.97438 * 16 15 14 19 19 C 1.46534 * 124.97946 * 179.97438 * 18 16 15 20 20 C 1.53738 * 105.20048 * 179.97438 * 19 18 16 21 21 C 1.51207 * 104.58186 * 0.02562 * 20 19 18 22 22 C 1.38187 * 130.97579 * 179.97438 * 21 20 19 23 23 C 1.38230 * 120.14743 * 179.15571 * 22 21 20 24 24 C 1.38293 * 119.83041 * 0.82819 * 23 22 21 25 25 C 1.37841 * 120.22008 * 359.47548 * 24 23 22 26 26 C 1.38561 * 108.55958 * 359.75162 * 21 20 19 27 27 C 1.38700 * 119.27773 * 359.97438 * 13 12 11 28 28 H 0.96997 * 119.99980 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.71556 * 359.95410 * 10 9 7 30 30 H 1.07997 * 119.39587 * 179.97438 * 12 11 10 31 31 H 0.96999 * 120.00073 * 179.97438 * 14 13 12 32 32 H 1.08991 * 109.47284 * 299.99837 * 15 14 13 33 33 H 1.09006 * 109.47204 * 60.00241 * 15 14 13 34 34 H 1.09006 * 110.30089 * 298.91531 * 19 18 16 35 35 H 1.09005 * 110.29749 * 60.95370 * 19 18 16 36 36 H 1.09008 * 110.41321 * 118.77900 * 20 19 18 37 37 H 1.08998 * 110.41343 * 241.22550 * 20 19 18 38 38 H 1.08001 * 119.92343 * 0.04160 * 22 21 20 39 39 H 1.08004 * 120.08637 * 180.33129 * 23 22 21 40 40 H 1.08003 * 119.89231 * 179.50414 * 24 23 22 41 41 H 1.08005 * 119.85826 * 180.02562 * 25 24 23 42 42 H 1.07999 * 120.92796 * 180.27059 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3463 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0525 -1.2325 -0.2734 9 6 1.3473 -2.4097 0.3597 10 6 1.8232 -3.6549 -0.0934 11 7 1.2084 -4.7676 0.2416 12 6 0.1323 -4.7707 1.0062 13 6 -0.4066 -3.5845 1.4986 14 7 -1.5461 -3.6084 2.3070 15 6 -2.1809 -4.8859 2.6403 16 6 -3.3807 -4.6367 3.5177 17 8 -3.6766 -3.5036 3.8329 18 7 -4.1254 -5.6731 3.9510 19 6 -5.3100 -5.5569 4.8057 20 6 -5.7976 -6.9995 5.0171 21 6 -4.8183 -7.8501 4.2401 22 6 -4.7488 -9.2187 4.0625 23 6 -3.7509 -9.7674 3.2789 24 6 -2.8109 -8.9442 2.6863 25 6 -2.8725 -7.5790 2.8657 26 6 -3.8841 -7.0164 3.6467 27 6 0.2008 -2.3793 1.1787 28 1 -0.4850 0.8400 -0.0004 29 1 2.7007 -3.6962 -0.7218 30 1 -0.3389 -5.7103 1.2544 31 1 -1.9167 -2.7791 2.6473 32 1 -2.4975 -5.3843 1.7242 33 1 -1.4686 -5.5182 3.1705 34 1 -5.0443 -5.1037 5.7608 35 1 -6.0788 -4.9655 4.3082 36 1 -5.7699 -7.2590 6.0755 37 1 -6.8057 -7.1219 4.6210 38 1 -5.4843 -9.8601 4.5253 39 1 -3.7007 -10.8368 3.1364 40 1 -2.0260 -9.3725 2.0804 41 1 -2.1356 -6.9415 2.3998 42 1 -0.1920 -1.4441 1.5495 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164593338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:54 Heat of formation + Delta-G solvation = 20.157102 kcal Electronic energy + Delta-G solvation = -25915.745886 eV Core-core repulsion = 22245.701290 eV Total energy + Delta-G solvation = -3670.044596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.35540 -40.45018 -39.91087 -37.42009 -36.58126 -35.79300 -34.06898 -32.27822 -31.12985 -30.74112 -30.04241 -27.88933 -27.38891 -24.37931 -24.15119 -23.75401 -22.62552 -22.03037 -21.03925 -19.21999 -18.80846 -17.74347 -17.64776 -17.41452 -17.28675 -16.85945 -16.49012 -16.25984 -16.05626 -15.58269 -15.37193 -14.88259 -14.73491 -14.47497 -14.33900 -13.92798 -13.73349 -13.67000 -13.49989 -13.27032 -13.16700 -13.10535 -12.96630 -12.70899 -12.43940 -12.19963 -11.81339 -11.74153 -11.45709 -11.39562 -11.31593 -11.18786 -10.04665 -9.76301 -9.73687 -8.88393 -8.71976 -8.25182 -6.45918 0.16988 0.40944 0.89723 1.14678 1.31162 1.38735 1.41726 1.51899 1.55121 2.18752 2.53167 2.75519 2.82676 3.02666 3.46035 3.63702 3.76422 3.95644 4.03933 4.09511 4.16076 4.18380 4.23244 4.38182 4.41066 4.56142 4.61150 4.62020 4.76193 4.91395 4.92777 4.93174 5.01203 5.11922 5.15064 5.25157 5.39759 5.50426 5.61435 5.64566 5.80039 5.95751 5.98328 6.16645 6.27661 6.57086 6.67516 6.68695 6.81482 6.93272 7.77065 8.26146 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.002819 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.360747 B = 9928.618573 C =11162.361374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.034 3.966 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.479 4.479 8 H 0.088 0.912 9 C 0.072 3.928 10 C -0.071 4.071 11 N -0.448 5.448 12 C -0.103 4.103 13 C 0.183 3.817 14 N -0.744 5.744 15 C 0.118 3.882 16 C 0.521 3.479 17 O -0.550 6.550 18 N -0.550 5.550 19 C 0.096 3.904 20 C -0.075 4.075 21 C -0.137 4.137 22 C -0.075 4.075 23 C -0.136 4.136 24 C -0.093 4.093 25 C -0.174 4.174 26 C 0.108 3.892 27 C -0.233 4.233 28 H 0.289 0.711 29 H 0.134 0.866 30 H 0.147 0.853 31 H 0.397 0.603 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.146 0.854 41 H 0.129 0.871 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.213 -16.376 10.239 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.509 4.509 8 H 0.106 0.894 9 C 0.067 3.933 10 C -0.235 4.235 11 N -0.155 5.155 12 C -0.263 4.263 13 C 0.080 3.920 14 N -0.379 5.379 15 C -0.009 4.009 16 C 0.311 3.689 17 O -0.428 6.428 18 N -0.274 5.274 19 C -0.025 4.025 20 C -0.112 4.112 21 C -0.139 4.139 22 C -0.094 4.094 23 C -0.154 4.154 24 C -0.111 4.111 25 C -0.194 4.194 26 C 0.014 3.986 27 C -0.264 4.264 28 H 0.099 0.901 29 H 0.152 0.848 30 H 0.164 0.836 31 H 0.234 0.766 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.174 0.826 39 H 0.173 0.827 40 H 0.164 0.836 41 H 0.146 0.854 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.324 -16.465 10.133 23.480 hybrid contribution -0.093 2.338 0.201 2.348 sum -13.417 -14.127 10.334 22.054 Atomic orbital electron populations 1.69899 1.09243 1.30688 1.34308 1.26882 0.95488 1.04865 0.91010 0.85082 0.79640 0.75730 0.78826 1.17582 1.18950 1.19232 1.19880 0.98397 0.91732 1.40863 0.89412 1.18597 0.91556 0.94400 0.88750 1.22505 1.04512 0.88074 1.08394 1.66843 1.07157 1.31638 1.09849 1.21667 0.99897 0.95296 1.09391 1.18669 0.87066 0.95233 0.91013 1.44217 1.29515 1.07341 1.56857 1.21442 0.92472 0.88232 0.98788 1.20678 0.84150 0.83842 0.80228 1.90701 1.71110 1.22803 1.58142 1.45912 1.28619 1.04542 1.48284 1.22330 0.85663 0.99855 0.94643 1.21179 0.98941 0.88936 1.02119 1.20341 0.97701 0.94243 1.01653 1.20792 0.98850 0.92120 0.97589 1.21467 0.94833 1.01333 0.97790 1.21227 0.99416 0.91757 0.98714 1.21285 0.99115 0.97138 1.01853 1.18665 0.97994 0.82801 0.99166 1.21040 1.02706 0.95400 1.07212 0.90063 0.84830 0.83614 0.76649 0.88160 0.87859 0.89712 0.89837 0.86809 0.86876 0.82601 0.82710 0.83609 0.85351 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.26 10.93 21.83 0.24 -43.02 16 2 C 0.03 1.70 5.18 85.25 0.44 2.15 16 3 Si 0.99 38.19 29.59 68.60 2.03 40.22 16 4 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 5 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 6 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 7 C -0.48 -25.83 9.08 23.47 0.21 -25.61 16 8 H 0.09 4.47 7.90 -2.91 -0.02 4.45 16 9 C 0.07 4.01 5.59 -21.21 -0.12 3.89 16 10 C -0.07 -3.71 10.97 85.37 0.94 -2.78 16 11 N -0.45 -22.44 10.33 -193.06 -1.99 -24.43 16 12 C -0.10 -4.75 10.49 84.92 0.89 -3.86 16 13 C 0.18 8.78 6.67 38.24 0.25 9.04 16 14 N -0.74 -30.55 5.71 -342.93 -1.96 -32.51 16 15 C 0.12 3.76 3.23 85.64 0.28 4.04 16 16 C 0.52 16.51 7.87 87.66 0.69 17.20 16 17 O -0.55 -21.03 15.96 -3.05 -0.05 -21.08 16 18 N -0.55 -13.73 3.13 -629.47 -1.97 -15.70 16 19 C 0.10 1.77 7.06 86.62 0.61 2.38 16 20 C -0.07 -0.86 6.93 30.26 0.21 -0.65 16 21 C -0.14 -2.19 6.23 -19.64 -0.12 -2.31 16 22 C -0.08 -0.91 10.04 22.26 0.22 -0.68 16 23 C -0.14 -1.68 10.06 22.28 0.22 -1.46 16 24 C -0.09 -1.51 10.02 22.19 0.22 -1.29 16 25 C -0.17 -3.65 8.88 22.51 0.20 -3.45 16 26 C 0.11 2.35 6.59 38.28 0.25 2.60 16 27 C -0.23 -12.68 8.66 23.04 0.20 -12.48 16 28 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 29 H 0.13 6.52 8.06 -2.91 -0.02 6.50 16 30 H 0.15 5.59 6.73 -2.91 -0.02 5.57 16 31 H 0.40 17.22 7.46 -92.71 -0.69 16.53 16 32 H 0.10 3.00 6.70 -2.39 -0.02 2.99 16 33 H 0.10 3.02 6.75 -2.38 -0.02 3.00 16 34 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.11 0.84 8.14 -2.38 -0.02 0.83 16 37 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 39 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 40 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 41 H 0.13 2.87 4.21 -2.91 -0.01 2.86 16 42 H 0.11 6.19 6.23 -2.91 -0.02 6.17 16 Total: -1.00 -69.70 349.58 2.29 -67.41 By element: Atomic # 1 Polarization: 42.01 SS G_CDS: 0.38 Total: 42.39 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 5.61 Total: -13.28 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -5.68 Total: -115.66 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.05 Total: -21.08 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -69.70 2.29 -67.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164593338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.569 kcal (2) G-P(sol) polarization free energy of solvation -69.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds