Wall clock time and date at job start Tue Mar 31 2020 13:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 120.00010 * 2 1 4 4 H 1.48499 * 109.47513 * 239.99907 * 3 2 1 5 5 H 1.48498 * 109.47073 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47079 * 120.00005 * 3 2 1 7 7 C 1.40026 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.41317 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.40594 * 119.78433 * 180.02562 * 9 7 2 11 11 C 1.38349 * 119.14638 * 179.97438 * 10 9 7 12 12 C 1.38639 * 118.67925 * 359.97438 * 11 10 9 13 13 C 1.39751 * 119.49138 * 0.02562 * 12 11 10 14 14 N 1.38830 * 119.58236 * 179.97438 * 13 12 11 15 15 C 1.46505 * 120.00161 * 359.97438 * 14 13 12 16 16 C 1.50693 * 109.47322 * 179.97438 * 15 14 13 17 17 O 1.21286 * 119.99989 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00027 * 179.97438 * 16 15 14 19 19 C 1.46540 * 124.97901 * 179.97438 * 18 16 15 20 20 C 1.53744 * 105.19717 * 179.81937 * 19 18 16 21 21 C 1.51218 * 104.58111 * 0.33804 * 20 19 18 22 22 C 1.38187 * 130.97359 * 179.97438 * 21 20 19 23 23 C 1.38230 * 120.14815 * 179.63975 * 22 21 20 24 24 C 1.38294 * 119.83051 * 0.06709 * 23 22 21 25 25 C 1.37837 * 120.22182 * 359.95384 * 24 23 22 26 26 C 1.38565 * 108.55938 * 359.65018 * 21 20 19 27 27 N 1.31980 * 120.83493 * 0.25066 * 13 12 11 28 28 H 0.97001 * 120.00065 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.42638 * 0.02562 * 10 9 7 30 30 H 1.07994 * 120.65972 * 179.97438 * 11 10 9 31 31 H 1.07998 * 120.25176 * 180.02562 * 12 11 10 32 32 H 0.97005 * 119.99993 * 179.97438 * 14 13 12 33 33 H 1.09004 * 109.46766 * 60.00228 * 15 14 13 34 34 H 1.08997 * 109.47007 * 299.99989 * 15 14 13 35 35 H 1.09008 * 110.29735 * 298.96904 * 19 18 16 36 36 H 1.09003 * 110.29939 * 61.01045 * 19 18 16 37 37 H 1.08992 * 110.70649 * 241.41329 * 20 19 18 38 38 H 1.09003 * 110.12059 * 118.96015 * 20 19 18 39 39 H 1.07990 * 119.92273 * 359.66283 * 22 21 20 40 40 H 1.08003 * 120.08166 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.88700 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.85787 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6965 -1.2124 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3010 -2.4365 -0.0005 10 6 2.0086 -3.6514 -0.0005 11 6 1.3036 -4.8418 0.0000 12 6 -0.0819 -4.7945 0.0011 13 6 -0.7280 -3.5552 0.0010 14 7 -2.1154 -3.5056 0.0016 15 6 -2.8928 -4.7474 0.0016 16 6 -4.3636 -4.4193 0.0028 17 8 -4.7268 -3.2621 0.0032 18 7 -5.2755 -5.4118 0.0026 19 6 -6.7280 -5.2180 0.0042 20 6 -7.3237 -6.6354 -0.0016 21 6 -6.1220 -7.5533 0.0024 22 6 -6.0353 -8.9325 0.0005 23 6 -4.7988 -9.5504 -0.0023 24 6 -3.6471 -8.7847 -0.0019 25 6 -3.7288 -7.4087 0.0005 26 6 -4.9741 -6.7772 0.0016 27 7 -0.0359 -2.4315 -0.0050 28 1 -0.4850 0.8400 0.0004 29 1 3.0886 -3.6553 -0.0001 30 1 1.8223 -5.7890 -0.0004 31 1 -0.6576 -5.7082 0.0019 32 1 -2.5701 -2.6487 0.0019 33 1 -2.6498 -5.3282 0.8914 34 1 -2.6504 -5.3278 -0.8886 35 1 -7.0365 -4.6782 0.8996 36 1 -7.0382 -4.6758 -0.8891 37 1 -7.9232 -6.7978 -0.8971 38 1 -7.9253 -6.7929 0.8936 39 1 -6.9356 -9.5288 0.0009 40 1 -4.7323 -10.6283 -0.0042 41 1 -2.6806 -9.2665 -0.0037 42 1 -2.8256 -6.8165 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164593424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:50 Heat of formation + Delta-G solvation = 34.451183 kcal Electronic energy + Delta-G solvation = -26016.152268 eV Core-core repulsion = 22346.727510 eV Total energy + Delta-G solvation = -3669.424759 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.34466 -40.35462 -39.82785 -37.38819 -36.51919 -35.12025 -33.99144 -32.34549 -31.21624 -30.73030 -30.11160 -28.20081 -27.27481 -24.35137 -24.15143 -23.42520 -22.56749 -21.91993 -21.03547 -19.30171 -18.96318 -17.69951 -17.64064 -17.39533 -17.04115 -16.55105 -16.30472 -16.06423 -16.02696 -15.49320 -15.35920 -14.93531 -14.76916 -14.43120 -14.30727 -13.81242 -13.76264 -13.63972 -13.59728 -13.15457 -12.96769 -12.84727 -12.74615 -12.61765 -12.43460 -12.24607 -11.78836 -11.74505 -11.43831 -11.37412 -11.32119 -10.77020 -9.88052 -9.74457 -9.46652 -8.87405 -8.42604 -8.23613 -6.49970 0.18208 0.41989 1.04399 1.29228 1.35833 1.39600 1.41477 1.52659 1.57842 2.23637 2.50861 2.83605 2.90976 3.04536 3.46779 3.64346 3.96461 3.96881 4.06750 4.09781 4.19632 4.20914 4.36753 4.38283 4.41958 4.56832 4.62925 4.73252 4.91883 4.93094 4.93771 4.99858 5.02907 5.04631 5.15047 5.31612 5.41652 5.51391 5.63247 5.67777 5.93209 5.96128 6.01350 6.18675 6.19673 6.46747 6.61701 6.75082 6.87219 7.14089 8.31555 8.49783 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.002912 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.229745 B = 9612.597473 C =10937.959310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.022 3.978 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.470 4.470 8 H 0.091 0.909 9 C 0.258 3.742 10 C -0.338 4.338 11 C -0.025 4.025 12 C -0.364 4.364 13 C 0.393 3.607 14 N -0.734 5.734 15 C 0.128 3.872 16 C 0.519 3.481 17 O -0.550 6.550 18 N -0.550 5.550 19 C 0.095 3.905 20 C -0.074 4.074 21 C -0.137 4.137 22 C -0.075 4.075 23 C -0.136 4.136 24 C -0.091 4.091 25 C -0.174 4.174 26 C 0.108 3.892 27 N -0.569 5.569 28 H 0.274 0.726 29 H 0.107 0.893 30 H 0.137 0.863 31 H 0.126 0.874 32 H 0.395 0.605 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.918 -19.070 0.009 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.199 4.199 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.502 4.502 8 H 0.109 0.891 9 C 0.131 3.869 10 C -0.361 4.361 11 C -0.049 4.049 12 C -0.389 4.389 13 C 0.153 3.847 14 N -0.373 5.373 15 C 0.001 3.999 16 C 0.309 3.691 17 O -0.427 6.427 18 N -0.274 5.274 19 C -0.025 4.025 20 C -0.111 4.111 21 C -0.140 4.140 22 C -0.094 4.094 23 C -0.155 4.155 24 C -0.110 4.110 25 C -0.194 4.194 26 C 0.013 3.987 27 N -0.292 5.292 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.155 0.845 31 H 0.144 0.856 32 H 0.231 0.769 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.174 0.826 40 H 0.174 0.826 41 H 0.166 0.834 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.752 -17.561 0.002 23.590 hybrid contribution 0.748 0.767 0.006 1.071 sum -15.004 -16.794 0.008 22.520 Atomic orbital electron populations 1.70276 1.08970 1.28722 1.29796 1.27041 0.95675 1.04668 0.92529 0.85195 0.78522 0.75358 0.80160 1.18119 1.19698 1.18127 1.19953 0.94733 0.90405 1.45133 0.89125 1.18701 0.87295 0.93507 0.87417 1.21741 0.99204 0.93651 1.21503 1.21038 0.93443 0.97357 0.93067 1.20961 0.95231 0.95558 1.27183 1.18843 0.84675 0.90900 0.90245 1.44078 1.02179 1.07425 1.83574 1.21384 0.86247 0.88132 1.04185 1.20714 0.88684 0.84401 0.75303 1.90721 1.81694 1.20610 1.49698 1.45909 1.08246 1.04329 1.68891 1.22330 0.76617 0.99895 1.03704 1.21175 0.95458 0.88487 1.06008 1.20339 0.93767 0.94509 1.05370 1.20790 0.99481 0.91495 0.97598 1.21471 0.91569 1.01446 1.00967 1.21226 1.00583 0.91875 0.97276 1.21295 0.95395 0.96516 1.06203 1.18693 0.96323 0.82298 1.01347 1.68113 1.08353 1.26378 1.26317 0.91507 0.87532 0.84476 0.85625 0.76939 0.87871 0.87867 0.89846 0.89906 0.86802 0.86891 0.82642 0.82647 0.83374 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -43.66 11.46 21.84 0.25 -43.41 16 2 C 0.02 1.21 5.50 85.29 0.47 1.67 16 3 Si 0.99 40.35 29.56 68.60 2.03 42.38 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 7 C -0.47 -26.85 9.14 23.46 0.21 -26.63 16 8 H 0.09 4.79 7.85 -2.91 -0.02 4.77 16 9 C 0.26 15.11 6.55 40.19 0.26 15.37 16 10 C -0.34 -17.28 9.83 22.87 0.22 -17.05 16 11 C -0.02 -1.10 10.15 22.39 0.23 -0.88 16 12 C -0.36 -16.15 9.34 22.73 0.21 -15.94 16 13 C 0.39 20.18 7.65 133.40 1.02 21.20 16 14 N -0.73 -33.23 5.69 -348.73 -1.99 -35.21 16 15 C 0.13 4.32 3.19 85.63 0.27 4.60 16 16 C 0.52 17.48 7.87 87.65 0.69 18.17 16 17 O -0.55 -22.67 15.96 -3.05 -0.05 -22.72 16 18 N -0.55 -14.36 3.13 -629.46 -1.97 -16.33 16 19 C 0.10 1.87 7.06 86.62 0.61 2.48 16 20 C -0.07 -0.90 6.94 30.26 0.21 -0.69 16 21 C -0.14 -2.23 6.23 -19.63 -0.12 -2.36 16 22 C -0.08 -0.90 10.04 22.26 0.22 -0.68 16 23 C -0.14 -1.62 10.06 22.28 0.22 -1.39 16 24 C -0.09 -1.41 10.02 22.19 0.22 -1.19 16 25 C -0.17 -3.61 8.88 22.51 0.20 -3.41 16 26 C 0.11 2.38 6.59 38.28 0.25 2.63 16 27 N -0.57 -33.81 7.89 -186.59 -1.47 -35.28 16 28 H 0.27 14.56 8.29 -92.71 -0.77 13.79 16 29 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 30 H 0.14 4.80 8.06 -2.91 -0.02 4.77 16 31 H 0.13 4.52 6.68 -2.91 -0.02 4.50 16 32 H 0.39 19.74 7.56 -92.70 -0.70 19.04 16 33 H 0.10 3.17 6.69 -2.38 -0.02 3.15 16 34 H 0.10 3.17 6.69 -2.39 -0.02 3.16 16 35 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.16 0.90 8.06 -2.92 -0.02 0.87 16 40 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 42 H 0.13 2.84 4.21 -2.91 -0.01 2.83 16 Total: -1.00 -76.47 350.84 2.59 -73.88 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: 0.37 Total: 40.77 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 5.41 Total: -4.09 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -5.18 Total: -130.23 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -76.47 2.59 -73.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164593424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.331 kcal (2) G-P(sol) polarization free energy of solvation -76.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds