Wall clock time and date at job start Tue Mar 31 2020 13:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99455 * 2 1 4 4 H 1.48496 * 109.47160 * 270.00491 * 3 2 1 5 5 H 1.48503 * 109.47061 * 30.00513 * 3 2 1 6 6 H 1.48500 * 109.46598 * 150.00159 * 3 2 1 7 7 C 1.37873 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 179.97438 * 7 2 1 10 10 O 1.42905 * 109.46972 * 179.97438 * 9 7 2 11 11 C 1.35950 * 116.99802 * 179.97438 * 10 9 7 12 12 C 1.38741 * 119.98523 * 359.72987 * 11 10 9 13 13 C 1.38075 * 120.01518 * 179.72505 * 12 11 10 14 14 C 1.38867 * 119.98127 * 0.56743 * 13 12 11 15 15 N 1.40155 * 120.01318 * 179.72771 * 14 13 12 16 16 N 1.39879 * 125.47757 * 145.00922 * 15 14 13 17 17 C 1.30310 * 110.09311 * 179.97438 * 16 15 14 18 18 C 1.50700 * 126.08687 * 180.02562 * 17 16 15 19 19 N 1.46900 * 109.46966 * 89.97820 * 18 17 16 20 20 C 1.45938 * 107.82234 * 359.97438 * 17 16 15 21 21 C 1.39940 * 134.03447 * 180.02562 * 20 17 16 22 22 C 1.36482 * 119.63218 * 179.97438 * 21 20 17 23 23 C 1.38955 * 120.63250 * 0.02562 * 22 21 20 24 24 C 1.36620 * 120.80908 * 0.02562 * 23 22 21 25 25 C 1.37267 * 125.47809 * 324.69198 * 15 14 13 26 26 C 1.38866 * 119.97209 * 359.70517 * 14 13 12 27 27 C 1.38068 * 119.98540 * 0.02562 * 26 14 13 28 28 H 0.96992 * 120.00510 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 30 30 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 31 31 H 1.07998 * 119.99149 * 359.97438 * 12 11 10 32 32 H 1.07994 * 120.00610 * 180.27385 * 13 12 11 33 33 H 1.09003 * 109.46900 * 209.96980 * 18 17 16 34 34 H 1.08996 * 109.47557 * 329.97462 * 18 17 16 35 35 H 1.00901 * 110.99917 * 179.97438 * 19 18 17 36 36 H 1.00903 * 110.99618 * 303.95281 * 19 18 17 37 37 H 1.08002 * 120.18243 * 359.97438 * 21 20 17 38 38 H 1.08001 * 119.68322 * 179.97438 * 22 21 20 39 39 H 1.08003 * 119.59877 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.07582 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.01223 * 180.02562 * 26 14 13 42 42 H 1.08002 * 119.99839 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 8 3.9880 -2.5412 -0.0010 11 6 5.3358 -2.7192 -0.0020 12 6 6.1806 -1.6186 -0.0088 13 6 7.5495 -1.7987 -0.0041 14 6 8.0807 -3.0817 -0.0045 15 7 9.4702 -3.2652 -0.0055 16 7 10.1533 -4.2967 0.6472 17 6 11.4358 -4.1808 0.4476 18 6 12.5042 -5.0980 0.9845 19 7 12.7455 -6.1834 0.0244 20 6 11.6531 -3.0052 -0.3895 21 6 12.7897 -2.3885 -0.9242 22 6 12.6518 -1.2677 -1.6907 23 6 11.3943 -0.7337 -1.9443 24 6 10.2701 -1.3174 -1.4326 25 6 10.3790 -2.4652 -0.6522 26 6 7.2346 -4.1828 -0.0035 27 6 5.8659 -4.0014 -0.0025 28 1 -0.4850 0.8399 0.0004 29 1 3.8752 -0.6801 0.8888 30 1 3.8745 -0.6799 -0.8912 31 1 5.7673 -0.6209 -0.0136 32 1 8.2069 -0.9419 -0.0049 33 1 13.4250 -4.5344 1.1346 34 1 12.1772 -5.5196 1.9349 35 1 13.4588 -6.8123 0.3615 36 1 11.8920 -6.6808 -0.1810 37 1 13.7707 -2.7971 -0.7313 38 1 13.5286 -0.7908 -2.1034 39 1 11.3046 0.1541 -2.5528 40 1 9.2986 -0.8921 -1.6369 41 1 7.6470 -5.1810 -0.0034 42 1 5.2076 -4.8576 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167698022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:59 Heat of formation + Delta-G solvation = 82.940822 kcal Electronic energy + Delta-G solvation = -25505.486620 eV Core-core repulsion = 21838.164530 eV Total energy + Delta-G solvation = -3667.322090 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71735 -39.65064 -37.65793 -37.05825 -35.31294 -33.04387 -32.60107 -31.09300 -30.63996 -30.04600 -28.87595 -27.81155 -25.58546 -23.50999 -23.25431 -22.92385 -21.56335 -21.26488 -19.76828 -18.11064 -17.71580 -17.24978 -16.61696 -16.41836 -15.75378 -15.50844 -15.29246 -14.99536 -14.93833 -14.66971 -14.46822 -14.12905 -14.03306 -13.36542 -13.31169 -13.13824 -12.82626 -12.61874 -12.49394 -12.19945 -12.10530 -11.98976 -11.27254 -11.26145 -11.15316 -11.06197 -10.76835 -10.59834 -10.12934 -10.02579 -9.43737 -9.18567 -8.99101 -8.88024 -8.82509 -8.50784 -7.36363 -6.29878 -4.32598 0.65510 1.11597 1.38598 1.62282 2.15112 2.26849 3.12192 3.18161 3.20169 3.57582 3.81102 4.00687 4.08697 4.18363 4.22606 4.35320 4.49464 4.76081 4.84048 4.95241 4.98278 5.00322 5.08914 5.15814 5.17466 5.32968 5.35179 5.51648 5.52963 5.75509 5.80719 5.98746 6.08967 6.14903 6.21642 6.22578 6.31492 6.42321 6.53711 6.58948 6.62592 6.65484 6.72740 6.96383 7.18115 7.29909 7.46555 7.87213 8.41300 8.79115 9.25332 10.82351 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019897 B = 0.002692 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.938750 B =10397.168530 C =11574.621073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.079 3.921 3 Si 0.873 3.127 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.087 0.913 9 C 0.166 3.834 10 O -0.297 6.297 11 C 0.152 3.848 12 C -0.194 4.194 13 C -0.089 4.089 14 C 0.096 3.904 15 N -0.337 5.337 16 N -0.241 5.241 17 C 0.096 3.904 18 C 0.146 3.854 19 N -0.843 5.843 20 C -0.162 4.162 21 C -0.036 4.036 22 C -0.160 4.160 23 C -0.072 4.072 24 C -0.138 4.138 25 C 0.127 3.873 26 C -0.072 4.072 27 C -0.145 4.145 28 H 0.270 0.730 29 H 0.021 0.979 30 H 0.016 0.984 31 H 0.139 0.861 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.348 0.652 36 H 0.347 0.653 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.541 -5.758 -0.922 29.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.105 0.895 9 C 0.092 3.908 10 O -0.209 6.209 11 C 0.103 3.897 12 C -0.214 4.214 13 C -0.110 4.110 14 C 0.005 3.995 15 N -0.118 5.118 16 N -0.054 5.054 17 C -0.082 4.082 18 C 0.014 3.986 19 N -0.375 5.375 20 C -0.170 4.170 21 C -0.057 4.057 22 C -0.180 4.180 23 C -0.092 4.092 24 C -0.159 4.159 25 C 0.014 3.986 26 C -0.092 4.092 27 C -0.164 4.164 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.034 0.966 31 H 0.157 0.843 32 H 0.145 0.855 33 H 0.113 0.887 34 H 0.068 0.932 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 27.354 -5.866 -0.832 27.989 hybrid contribution 0.526 1.076 0.378 1.256 sum 27.881 -4.791 -0.455 28.293 Atomic orbital electron populations 1.69843 1.06031 1.27501 1.48933 1.24703 0.94849 0.98710 0.94219 0.86897 0.80428 0.83721 0.79077 1.19550 1.20355 1.18954 1.20749 0.87312 0.95849 1.52927 0.89485 1.21069 0.96754 0.76994 0.95946 1.86206 1.15815 1.33235 1.85645 1.19355 0.84812 0.93474 0.92039 1.21227 0.92662 0.99580 1.07888 1.20718 0.95089 0.94880 1.00280 1.17165 0.77972 0.94317 1.10026 1.45231 1.03562 1.21602 1.41383 1.76630 1.05688 1.08043 1.15021 1.23373 0.91894 0.95407 0.97524 1.20022 0.94577 0.91185 0.92834 1.58625 1.14741 1.16390 1.47765 1.19645 0.93288 0.98506 1.05543 1.20311 0.96769 0.93988 0.94591 1.20680 0.97554 0.97746 1.01997 1.20764 0.91788 0.99062 0.97619 1.20054 1.00129 0.95050 1.00704 1.18862 0.88959 0.94414 0.96356 1.20634 0.91917 0.97748 0.98942 1.20331 0.93995 0.95668 1.06413 0.91961 0.96181 0.96617 0.84343 0.85473 0.88672 0.93242 0.83781 0.84050 0.85452 0.85601 0.85242 0.85286 0.84998 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 20.23 27.47 -169.99 -4.67 15.57 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 7 C -0.53 -15.07 9.99 -34.44 -0.34 -15.41 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 C 0.17 3.98 3.56 36.01 0.13 4.11 16 10 O -0.30 -6.74 10.12 -19.58 -0.20 -6.94 16 11 C 0.15 2.86 6.69 -39.21 -0.26 2.60 16 12 C -0.19 -3.32 9.03 -39.46 -0.36 -3.68 16 13 C -0.09 -1.36 8.76 -39.41 -0.35 -1.70 16 14 C 0.10 1.50 6.38 -83.59 -0.53 0.96 16 15 N -0.34 -5.08 3.77 -8.36 -0.03 -5.11 16 16 N -0.24 -3.43 12.14 34.85 0.42 -3.01 16 17 C 0.10 1.13 6.94 -80.16 -0.56 0.58 16 18 C 0.15 1.14 7.38 -4.98 -0.04 1.11 16 19 N -0.84 -5.88 9.61 -11.41 -0.11 -5.99 16 20 C -0.16 -1.99 6.33 -105.19 -0.67 -2.66 16 21 C -0.04 -0.35 10.07 -39.58 -0.40 -0.75 16 22 C -0.16 -1.40 9.97 -39.95 -0.40 -1.80 16 23 C -0.07 -0.68 9.96 -39.90 -0.40 -1.08 16 24 C -0.14 -1.63 9.06 -39.80 -0.36 -1.99 16 25 C 0.13 1.75 6.60 -84.08 -0.55 1.20 16 26 C -0.07 -1.10 9.73 -39.41 -0.38 -1.48 16 27 C -0.14 -2.36 9.98 -39.46 -0.39 -2.75 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.02 0.48 6.73 -51.93 -0.35 0.13 16 30 H 0.02 0.37 7.07 -51.93 -0.37 0.00 16 31 H 0.14 2.34 6.29 -52.49 -0.33 2.01 16 32 H 0.13 1.70 6.30 -52.49 -0.33 1.37 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.35 1.50 9.08 -39.29 -0.36 1.14 16 36 H 0.35 2.56 8.99 -39.29 -0.35 2.21 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.13 1.45 6.45 -52.49 -0.34 1.11 16 41 H 0.13 1.80 8.05 -52.49 -0.42 1.38 16 42 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -32.28 357.55 -9.36 -41.63 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.97 Total: 4.61 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -5.96 Total: -20.62 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 1.06 Total: -39.64 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.20 Total: -6.94 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.28 -9.36 -41.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167698022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.572 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds